RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 DSG2Q14126 1118 aa13.05□□□□□ -0.32
SHMT2-219ENST00000555563 SSPNQ14714 243 aa13.05□□□□□ -0.32
SHMT2-219ENST00000555563 FBXO48Q5FWF7 155 aa13.05□□□□□ -0.32
SHMT2-219ENST00000555563 MROH9Q5TGP6 573 aa13.05□□□□□ -0.32
SHMT2-219ENST00000555563 TBC1D1Q86TI0 1168 aaPredicted RBP13.05□□□□□ -0.32
SHMT2-219ENST00000555563 ASPGQ86U10 573 aa13.05□□□□□ -0.32
SHMT2-219ENST00000555563 IFT20Q8IY31 132 aa13.05□□□□□ -0.32
SHMT2-219ENST00000555563 KLHDC8AQ8IYD2 350 aa13.05□□□□□ -0.32
SHMT2-219ENST00000555563 AMER3Q8N944 861 aa13.05□□□□□ -0.32
SHMT2-219ENST00000555563 MFSD9Q8NBP5 474 aa13.05□□□□□ -0.32
SHMT2-219ENST00000555563 PDPRQ8NCN5 879 aa13.05□□□□□ -0.32
SHMT2-219ENST00000555563 ZNF740Q8NDX6 193 aa13.05□□□□□ -0.32
SHMT2-219ENST00000555563 OR4K1Q8NGD4 311 aa13.05□□□□□ -0.32
SHMT2-219ENST00000555563 EXT2Q93063 718 aa13.05□□□□□ -0.32
SHMT2-219ENST00000555563 ING2Q9H160 280 aa13.05□□□□□ -0.32
SHMT2-219ENST00000555563 ALG9Q9H6U8 611 aa13.05□□□□□ -0.32
SHMT2-219ENST00000555563 L2HGDHQ9H9P8 463 aa13.05□□□□□ -0.32
SHMT2-219ENST00000555563 ACSS2Q9NR19 701 aa13.05□□□□□ -0.32
SHMT2-219ENST00000555563 SNX15Q9NRS6 342 aa13.05□□□□□ -0.32
SHMT2-219ENST00000555563 IGSF5Q9NSI5 407 aa13.05□□□□□ -0.32
SHMT2-219ENST00000555563 WWOXQ9NZC7 414 aa13.05□□□□□ -0.32
SHMT2-219ENST00000555563 DYRK1BQ9Y463 629 aa13.05□□□□□ -0.32
SHMT2-219ENST00000555563 NUP210LQ5VU65 1888 aa13.05□□□□□ -0.32
SHMT2-219ENST00000555563 CCDC88CQ9P219 2028 aa13.05□□□□□ -0.32
SHMT2-219ENST00000555563 FLNBO75369 2602 aaKnown RBP13.04□□□□□ -0.32
SHMT2-219ENST00000555563 ASH1LQ9NR48 2969 aaKnown RBP13.04□□□□□ -0.32
SHMT2-219ENST00000555563 TRBC2A0A5B9 178 aa13.04□□□□□ -0.32
SHMT2-219ENST00000555563 VSTM2BA6NLU5 285 aa13.04□□□□□ -0.32
SHMT2-219ENST00000555563 TAPBPO15533 448 aa13.04□□□□□ -0.32
SHMT2-219ENST00000555563 PRPF4O43172 522 aaKnown RBP eCLIP13.04□□□□□ -0.323e-10■■□□□ 12.6
SHMT2-219ENST00000555563 LCMT2O60294 686 aaKnown RBP13.04□□□□□ -0.32
SHMT2-219ENST00000555563 ALDOAP04075 364 aaKnown RBP13.04□□□□□ -0.32
SHMT2-219ENST00000555563 LTA4HP09960 611 aaKnown RBP13.04□□□□□ -0.32
SHMT2-219ENST00000555563 TFEBP19484 476 aa13.04□□□□□ -0.32
SHMT2-219ENST00000555563 NR1D1P20393 614 aa13.04□□□□□ -0.32
SHMT2-219ENST00000555563 GDF5P43026 501 aa13.04□□□□□ -0.32
SHMT2-219ENST00000555563 SERPINB8P50452 374 aa13.04□□□□□ -0.32
SHMT2-219ENST00000555563 NDUFA9Q16795 377 aa13.04□□□□□ -0.32
SHMT2-219ENST00000555563 LACTB2Q53H82 288 aaPredicted RBP13.04□□□□□ -0.32
SHMT2-219ENST00000555563 TMEM214Q6NUQ4 689 aaKnown RBP13.04□□□□□ -0.32
SHMT2-219ENST00000555563 PRSS41Q7RTY9 318 aa13.04□□□□□ -0.32
SHMT2-219ENST00000555563 GSPT2Q8IYD1 628 aaKnown RBP13.04□□□□□ -0.32
SHMT2-219ENST00000555563 PRSS58Q8IYP2 241 aa13.04□□□□□ -0.32
SHMT2-219ENST00000555563 CENPLQ8N0S6 344 aaPredicted RBP13.04□□□□□ -0.32
SHMT2-219ENST00000555563 TCAIMQ8N3R3 496 aa13.04□□□□□ -0.32
SHMT2-219ENST00000555563 CAMKVQ8NCB2 501 aa13.04□□□□□ -0.32
SHMT2-219ENST00000555563 UHMK1Q8TAS1 419 aaKnown RBP13.04□□□□□ -0.32
SHMT2-219ENST00000555563 ZCCHC10Q8TBK6 192 aa13.04□□□□□ -0.32
SHMT2-219ENST00000555563 KCTD4Q8WVF5 259 aa13.04□□□□□ -0.32
SHMT2-219ENST00000555563 SLC44A1Q8WWI5 657 aa13.04□□□□□ -0.32
SHMT2-219ENST00000555563 TM4SF19Q96DZ7 209 aa13.04□□□□□ -0.32
SHMT2-219ENST00000555563 MMABQ96EY8 250 aaPredicted RBP13.04□□□□□ -0.32
SHMT2-219ENST00000555563 PAFAH2Q99487 392 aa13.04□□□□□ -0.32
SHMT2-219ENST00000555563 SARGQ9BW04 601 aa13.04□□□□□ -0.32
SHMT2-219ENST00000555563 PELI2Q9HAT8 420 aa13.04□□□□□ -0.32
SHMT2-219ENST00000555563 ZNF71Q9NQZ8 489 aaPredicted RBP13.04□□□□□ -0.32
SHMT2-219ENST00000555563 ZNF282Q9UDV7 671 aaPredicted RBP13.04□□□□□ -0.32
SHMT2-219ENST00000555563 RNF112Q9ULX5 631 aa13.04□□□□□ -0.32
SHMT2-219ENST00000555563 CDC14AQ9UNH5 594 aa13.04□□□□□ -0.32
SHMT2-219ENST00000555563 TP53TG5Q9Y2B4 290 aa13.04□□□□□ -0.32
SHMT2-219ENST00000555563 KCNE2Q9Y6J6 123 aa13.04□□□□□ -0.32
SHMT2-219ENST00000555563 COL6A6A6NMZ7 2263 aa13.03□□□□□ -0.32
SHMT2-219ENST00000555563 IGLV3-12A0A075B6K2 115 aa13.03□□□□□ -0.32
SHMT2-219ENST00000555563 A0A087X1B8 175 aa13.03□□□□□ -0.32
SHMT2-219ENST00000555563 B8ZZF3 427 aa13.03□□□□□ -0.32
SHMT2-219ENST00000555563 K7EM74 188 aa13.03□□□□□ -0.32
SHMT2-219ENST00000555563 NDUFS4O43181 175 aa13.03□□□□□ -0.32
SHMT2-219ENST00000555563 OR1F1O43749 312 aa13.03□□□□□ -0.32
SHMT2-219ENST00000555563 KERAO60938 352 aa13.03□□□□□ -0.32
SHMT2-219ENST00000555563 C2P06681 752 aa13.03□□□□□ -0.32
SHMT2-219ENST00000555563 INHBAP08476 426 aa13.03□□□□□ -0.32
SHMT2-219ENST00000555563 SLC35G6P0C7Q6 338 aa13.03□□□□□ -0.32
SHMT2-219ENST00000555563 IL1RNP18510 177 aa13.03□□□□□ -0.32
SHMT2-219ENST00000555563 MMP11P24347 488 aa13.03□□□□□ -0.32
SHMT2-219ENST00000555563 VARSP26640 1264 aaKnown RBP13.03□□□□□ -0.32
SHMT2-219ENST00000555563 SLC26A3P40879 764 aa13.03□□□□□ -0.32
SHMT2-219ENST00000555563 KCNC1P48547 511 aa13.03□□□□□ -0.32
SHMT2-219ENST00000555563 HSPA7P48741 367 aa13.03□□□□□ -0.32
SHMT2-219ENST00000555563 MAT1AQ00266 395 aaKnown RBP13.03□□□□□ -0.32
SHMT2-219ENST00000555563 OCA2Q04671 838 aa13.03□□□□□ -0.32
SHMT2-219ENST00000555563 KLC1Q07866 573 aa13.03□□□□□ -0.32
SHMT2-219ENST00000555563 CDC16Q13042 620 aa13.03□□□□□ -0.32
SHMT2-219ENST00000555563 FAM53BQ14153 422 aa13.03□□□□□ -0.32
SHMT2-219ENST00000555563 VWA2Q5GFL6 755 aa13.03□□□□□ -0.32
SHMT2-219ENST00000555563 CDKL4Q5MAI5 379 aa13.03□□□□□ -0.32
SHMT2-219ENST00000555563 SULT1C3Q6IMI6 304 aa13.03□□□□□ -0.32
SHMT2-219ENST00000555563 NXPE4Q6UWF7 544 aa13.03□□□□□ -0.32
SHMT2-219ENST00000555563 ISCA2Q86U28 154 aa13.03□□□□□ -0.32
SHMT2-219ENST00000555563 TMEM102Q8N9M5 508 aaPredicted RBP13.03□□□□□ -0.32
SHMT2-219ENST00000555563 KCT2Q8NC54 265 aa13.03□□□□□ -0.32
SHMT2-219ENST00000555563 OR9A4Q8NGU2 314 aa13.03□□□□□ -0.32
SHMT2-219ENST00000555563 STAG3L4Q8TBR4 150 aa13.03□□□□□ -0.32
SHMT2-219ENST00000555563 STT3BQ8TCJ2 826 aa13.03□□□□□ -0.32
SHMT2-219ENST00000555563 SLC13A3Q8WWT9 602 aa13.03□□□□□ -0.32
SHMT2-219ENST00000555563 ESAMQ96AP7 390 aa13.03□□□□□ -0.32
SHMT2-219ENST00000555563 NXNL1Q96CM4 212 aa13.03□□□□□ -0.32
SHMT2-219ENST00000555563 MOCOSQ96EN8 888 aa13.03□□□□□ -0.32
SHMT2-219ENST00000555563 IP6K3Q96PC2 410 aa13.03□□□□□ -0.32
SHMT2-219ENST00000555563 ATOH8Q96SQ7 321 aa13.03□□□□□ -0.32
SHMT2-219ENST00000555563 CRB3Q9BUF7 120 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms