RNA–Protein interactions for RNA: ENST00000553474.5

SHMT2-205, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2 BASIC

Gene SHMT2, Length 1,765 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-205ENST00000553474 NLRP8Q86W28 1048 aa12.47□□□□□ -0.41
SHMT2-205ENST00000553474 EZH1Q92800 747 aaPredicted RBP12.47□□□□□ -0.41
SHMT2-205ENST00000553474 AP2M1Q96CW1 435 aa12.47□□□□□ -0.41
SHMT2-205ENST00000553474 COQ8BQ96D53 544 aa12.47□□□□□ -0.41
SHMT2-205ENST00000553474 ZNF514Q96K75 400 aaPredicted RBP12.47□□□□□ -0.41
SHMT2-205ENST00000553474 APOL4Q9BPW4 351 aa12.47□□□□□ -0.41
SHMT2-205ENST00000553474 EFCAB11Q9BUY7 163 aa12.47□□□□□ -0.41
SHMT2-205ENST00000553474 IGFLR1Q9H665 355 aa12.47□□□□□ -0.41
SHMT2-205ENST00000553474 LIN28AQ9H9Z2 209 aaKnown RBP12.47□□□□□ -0.41
SHMT2-205ENST00000553474 FANCEQ9HB96 536 aa12.47□□□□□ -0.41
SHMT2-205ENST00000553474 ATAD3AQ9NVI7 634 aa12.47□□□□□ -0.41
SHMT2-205ENST00000553474 TSC22D4Q9Y3Q8 395 aa12.47□□□□□ -0.41
SHMT2-205ENST00000553474 PCM1Q15154 2024 aa12.47□□□□□ -0.41
SHMT2-205ENST00000553474 SZT2Q5T011 3432 aa12.46□□□□□ -0.41
SHMT2-205ENST00000553474 OR2AG2A6NM03 316 aa12.46□□□□□ -0.41
SHMT2-205ENST00000553474 SLC1A7O00341 560 aa12.46□□□□□ -0.41
SHMT2-205ENST00000553474 BCKDKO14874 412 aa12.46□□□□□ -0.41
SHMT2-205ENST00000553474 XYLBO75191 536 aa12.46□□□□□ -0.41
SHMT2-205ENST00000553474 JRKO75564 520 aa12.46□□□□□ -0.41
SHMT2-205ENST00000553474 LRATO95237 230 aa12.46□□□□□ -0.41
SHMT2-205ENST00000553474 ZNF682O95780 498 aa12.46□□□□□ -0.41
SHMT2-205ENST00000553474 PRNPP04156 253 aa12.46□□□□□ -0.41
SHMT2-205ENST00000553474 RHOP08100 348 aa12.46□□□□□ -0.41
SHMT2-205ENST00000553474 POU2F2P09086 479 aa12.46□□□□□ -0.41
SHMT2-205ENST00000553474 JUNDP17535 347 aa12.46□□□□□ -0.41
SHMT2-205ENST00000553474 IMPA1P29218 277 aa12.46□□□□□ -0.41
SHMT2-205ENST00000553474 YAP1P46937 504 aaKnown RBP12.46□□□□□ -0.41
SHMT2-205ENST00000553474 ITGA1P56199 1179 aa12.46□□□□□ -0.41
SHMT2-205ENST00000553474 CSNK2BP67870 215 aa12.46□□□□□ -0.41
SHMT2-205ENST00000553474 NAE1Q13564 534 aa12.46□□□□□ -0.41
SHMT2-205ENST00000553474 ACOX1Q15067 660 aa12.46□□□□□ -0.41
SHMT2-205ENST00000553474 PAGE2BQ5JRK9 111 aa12.46□□□□□ -0.41
SHMT2-205ENST00000553474 PDE12Q6L8Q7 609 aaKnown RBP12.46□□□□□ -0.41
SHMT2-205ENST00000553474 MED27Q6P2C8 311 aa12.46□□□□□ -0.41
SHMT2-205ENST00000553474 ZNF621Q6ZSS3 439 aa12.46□□□□□ -0.41
SHMT2-205ENST00000553474 C10orf111Q8N326 155 aa12.46□□□□□ -0.41
SHMT2-205ENST00000553474 SYNPOQ8N3V7 929 aa12.46□□□□□ -0.41
SHMT2-205ENST00000553474 RASGEF1AQ8N9B8 481 aa12.46□□□□□ -0.41
SHMT2-205ENST00000553474 OR7G3Q8NG95 312 aa12.46□□□□□ -0.41
SHMT2-205ENST00000553474 OR7A2PQ8NGA2 310 aa12.46□□□□□ -0.41
SHMT2-205ENST00000553474 B4GALNT2Q8NHY0 566 aa12.46□□□□□ -0.41
SHMT2-205ENST00000553474 CHTF18Q8WVB6 975 aa12.46□□□□□ -0.41
SHMT2-205ENST00000553474 BORCS5Q969J3 196 aa12.46□□□□□ -0.41
SHMT2-205ENST00000553474 NODALQ96S42 347 aa12.46□□□□□ -0.41
SHMT2-205ENST00000553474 BHLHE41Q9C0J9 482 aaPredicted RBP12.46□□□□□ -0.41
SHMT2-205ENST00000553474 TPT1P8Q9HAU6 139 aa12.46□□□□□ -0.41
SHMT2-205ENST00000553474 SGK2Q9HBY8 427 aa12.46□□□□□ -0.41
SHMT2-205ENST00000553474 CCNB1IP1Q9NPC3 277 aa12.46□□□□□ -0.41
SHMT2-205ENST00000553474 ITM2CQ9NQX7 267 aa12.46□□□□□ -0.41
SHMT2-205ENST00000553474 PSME2Q9UL46 239 aa12.46□□□□□ -0.41
SHMT2-205ENST00000553474 TPRKBQ9Y3C4 175 aa12.46□□□□□ -0.41
SHMT2-205ENST00000553474 C17orf113A0A1B0GUU1 675 aa12.46□□□□□ -0.42
SHMT2-205ENST00000553474 SH3PXD2BA1X283 911 aa12.46□□□□□ -0.42
SHMT2-205ENST00000553474 MGAT4DA6NG13 374 aa12.46□□□□□ -0.42
SHMT2-205ENST00000553474 H3BM21 787 aa12.46□□□□□ -0.42
SHMT2-205ENST00000553474 MTX2O75431 263 aa12.46□□□□□ -0.42
SHMT2-205ENST00000553474 SLC16A8O95907 504 aa12.46□□□□□ -0.42
SHMT2-205ENST00000553474 PTX3P26022 381 aaPredicted RBP12.46□□□□□ -0.42
SHMT2-205ENST00000553474 TIA1P31483 386 aaKnown RBP eCLIP12.46□□□□□ -0.423e-16■■■□□ 15.8
SHMT2-205ENST00000553474 NUP214P35658 2090 aaPredicted RBP12.46□□□□□ -0.42
SHMT2-205ENST00000553474 POLR2IP36954 125 aaKnown RBP12.46□□□□□ -0.42
SHMT2-205ENST00000553474 ST8SIA6P61647 398 aa12.46□□□□□ -0.42
SHMT2-205ENST00000553474 ELP6Q0PNE2 266 aa12.46□□□□□ -0.42
SHMT2-205ENST00000553474 NFATC3Q12968 1075 aa12.46□□□□□ -0.42
SHMT2-205ENST00000553474 LAPTM5Q13571 262 aa12.46□□□□□ -0.42
SHMT2-205ENST00000553474 SPIDRQ14159 915 aa12.46□□□□□ -0.42
SHMT2-205ENST00000553474 MOGQ16653 247 aa12.46□□□□□ -0.42
SHMT2-205ENST00000553474 LRRC73Q5JTD7 316 aa12.46□□□□□ -0.42
SHMT2-205ENST00000553474 ZNF551Q7Z340 670 aaPredicted RBP12.46□□□□□ -0.42
SHMT2-205ENST00000553474 TMEM179BQ7Z7N9 219 aa12.46□□□□□ -0.42
SHMT2-205ENST00000553474 TSPYL5Q86VY4 417 aaPredicted RBP12.46□□□□□ -0.42
SHMT2-205ENST00000553474 HORMAD1Q86X24 394 aa12.46□□□□□ -0.42
SHMT2-205ENST00000553474 PTOV1Q86YD1 416 aa12.46□□□□□ -0.42
SHMT2-205ENST00000553474 NPAS3Q8IXF0 933 aa12.46□□□□□ -0.42
SHMT2-205ENST00000553474 DRAXINQ8NBI3 349 aaPredicted RBP12.46□□□□□ -0.42
SHMT2-205ENST00000553474 GOT1L1Q8NHS2 421 aaPredicted RBP12.46□□□□□ -0.42
SHMT2-205ENST00000553474 MUL1Q969V5 352 aa12.46□□□□□ -0.42
SHMT2-205ENST00000553474 DTD2Q96FN9 168 aa12.46□□□□□ -0.42
SHMT2-205ENST00000553474 GAS2L1Q99501 681 aaPredicted RBP12.46□□□□□ -0.42
SHMT2-205ENST00000553474 MTERF1Q99551 399 aaKnown RBP12.46□□□□□ -0.42
SHMT2-205ENST00000553474 OCEL1Q9H607 264 aa12.46□□□□□ -0.42
SHMT2-205ENST00000553474 HCFC1R1Q9NWW0 138 aa12.46□□□□□ -0.42
SHMT2-205ENST00000553474 ADPRHL2Q9NX46 363 aa12.46□□□□□ -0.42
SHMT2-205ENST00000553474 ATP6V1HQ9UI12 483 aa12.46□□□□□ -0.42
SHMT2-205ENST00000553474 UTS2RQ9UKP6 389 aa12.46□□□□□ -0.42
SHMT2-205ENST00000553474 VPS4AQ9UN37 437 aa12.46□□□□□ -0.42
SHMT2-205ENST00000553474 PADI2Q9Y2J8 665 aa12.46□□□□□ -0.42
SHMT2-205ENST00000553474 SLC27A6Q9Y2P4 619 aa12.46□□□□□ -0.42
SHMT2-205ENST00000553474 NOTCH4Q99466 2003 aa12.45□□□□□ -0.42
SHMT2-205ENST00000553474 NUP210Q8TEM1 1887 aaPredicted RBP12.45□□□□□ -0.42
SHMT2-205ENST00000553474 C1orf226A1L170 272 aa12.45□□□□□ -0.42
SHMT2-205ENST00000553474 TTC34A8MYJ7 566 aa12.45□□□□□ -0.42
SHMT2-205ENST00000553474 NPC1O15118 1278 aa12.45□□□□□ -0.42
SHMT2-205ENST00000553474 CTSLP07711 333 aa12.45□□□□□ -0.42
SHMT2-205ENST00000553474 ANXA4P09525 319 aaPredicted RBP12.45□□□□□ -0.42
SHMT2-205ENST00000553474 EPCAMP16422 314 aa12.45□□□□□ -0.42
SHMT2-205ENST00000553474 WEE1P30291 646 aa12.45□□□□□ -0.42
SHMT2-205ENST00000553474 MVKQ03426 396 aa12.45□□□□□ -0.42
SHMT2-205ENST00000553474 RBBP4Q09028 425 aa12.45□□□□□ -0.42
SHMT2-205ENST00000553474 SLC14A1Q13336 389 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms