RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 TRBV5-4A0A0C4DH59 114 aa5.24□□□□□ -1.57
LIMA1-212ENST00000552491 PRAMEF25A6NGN4 478 aa5.24□□□□□ -1.57
LIMA1-212ENST00000552491 SLC38A8A6NNN8 435 aa5.24□□□□□ -1.57
LIMA1-212ENST00000552491 EVPLLA8MZ36 301 aa5.24□□□□□ -1.57
LIMA1-212ENST00000552491 NT5C1B-RDH14C9J2C7 533 aa5.24□□□□□ -1.57
LIMA1-212ENST00000552491 COCHO43405 550 aa5.24□□□□□ -1.57
LIMA1-212ENST00000552491 SMAD6O43541 496 aaKnown RBP5.24□□□□□ -1.57
LIMA1-212ENST00000552491 CPSF4O95639 269 aaKnown RBP5.24□□□□□ -1.57
LIMA1-212ENST00000552491 ADH1BP00325 375 aa5.24□□□□□ -1.57
LIMA1-212ENST00000552491 KRT6AP02538 564 aa5.24□□□□□ -1.57
LIMA1-212ENST00000552491 KRT6BP04259 564 aa5.24□□□□□ -1.57
LIMA1-212ENST00000552491 CDK1P06493 297 aa5.24□□□□□ -1.57
LIMA1-212ENST00000552491 ADORA3P0DMS8 318 aa5.24□□□□□ -1.57
LIMA1-212ENST00000552491 PRPS2P11908 318 aa5.24□□□□□ -1.57
LIMA1-212ENST00000552491 SNRPBP14678 240 aaKnown RBP5.24□□□□□ -1.57
LIMA1-212ENST00000552491 PCSK2P16519 638 aa5.24□□□□□ -1.57
LIMA1-212ENST00000552491 PTPN2P17706 415 aa5.24□□□□□ -1.57
LIMA1-212ENST00000552491 AMD1P17707 334 aa5.24□□□□□ -1.57
LIMA1-212ENST00000552491 ALOX12P18054 663 aa5.24□□□□□ -1.57
LIMA1-212ENST00000552491 ACRV1P26436 265 aa5.24□□□□□ -1.57
LIMA1-212ENST00000552491 CORO1AP31146 461 aaKnown RBP5.24□□□□□ -1.57
LIMA1-212ENST00000552491 RRM2P31350 389 aa5.24□□□□□ -1.57
LIMA1-212ENST00000552491 ATP5C1P36542 298 aaKnown RBP5.24□□□□□ -1.57
LIMA1-212ENST00000552491 KIR3DL1P43629 444 aa5.24□□□□□ -1.57
LIMA1-212ENST00000552491 KRT6CP48668 564 aa5.24□□□□□ -1.57
LIMA1-212ENST00000552491 RPIAP49247 311 aa5.24□□□□□ -1.57
LIMA1-212ENST00000552491 CASP9P55211 416 aa5.24□□□□□ -1.57
LIMA1-212ENST00000552491 CYP4F2P78329 520 aa5.24□□□□□ -1.57
LIMA1-212ENST00000552491 B4GALNT1Q00973 533 aa5.24□□□□□ -1.57
LIMA1-212ENST00000552491 IRF3Q14653 427 aa5.24□□□□□ -1.57
LIMA1-212ENST00000552491 TBCEQ15813 527 aaPredicted RBP5.24□□□□□ -1.57
LIMA1-212ENST00000552491 CDKN3Q16667 212 aa5.24□□□□□ -1.57
LIMA1-212ENST00000552491 TRIM71Q2Q1W2 868 aaKnown RBP5.24□□□□□ -1.57
LIMA1-212ENST00000552491 RTP2Q5QGT7 225 aa5.24□□□□□ -1.57
LIMA1-212ENST00000552491 LRRC66Q68CR7 880 aa5.24□□□□□ -1.57
LIMA1-212ENST00000552491 ADNP2Q6IQ32 1131 aa5.24□□□□□ -1.57
LIMA1-212ENST00000552491 NOXRED1Q6NXP6 359 aa5.24□□□□□ -1.57
LIMA1-212ENST00000552491 TAS1R1Q7RTX1 841 aa5.24□□□□□ -1.57
LIMA1-212ENST00000552491 TSPAN33Q86UF1 283 aa5.24□□□□□ -1.57
LIMA1-212ENST00000552491 TMEM173Q86WV6 379 aaPredicted RBP5.24□□□□□ -1.57
LIMA1-212ENST00000552491 ZSWIM9Q86XI8 627 aa5.24□□□□□ -1.57
LIMA1-212ENST00000552491 VRK3Q8IV63 474 aa5.24□□□□□ -1.57
LIMA1-212ENST00000552491 FAM9CQ8IZT9 166 aa5.24□□□□□ -1.57
LIMA1-212ENST00000552491 CYP4Z2PQ8N1L4 340 aa5.24□□□□□ -1.57
LIMA1-212ENST00000552491 IL17RDQ8NFM7 739 aa5.24□□□□□ -1.57
LIMA1-212ENST00000552491 FCGR1BQ92637 280 aa5.24□□□□□ -1.57
LIMA1-212ENST00000552491 BHMTQ93088 406 aa5.24□□□□□ -1.57
LIMA1-212ENST00000552491 PANX1Q96RD7 426 aa5.24□□□□□ -1.57
LIMA1-212ENST00000552491 FEVQ99581 238 aa5.24□□□□□ -1.57
LIMA1-212ENST00000552491 NIPSNAP1Q9BPW8 284 aa5.24□□□□□ -1.57
LIMA1-212ENST00000552491 CHCHD6Q9BRQ6 235 aa5.24□□□□□ -1.57
LIMA1-212ENST00000552491 GABARAPL3Q9BY60 117 aa5.24□□□□□ -1.57
LIMA1-212ENST00000552491 SLC29A3Q9BZD2 475 aa5.24□□□□□ -1.57
LIMA1-212ENST00000552491 MOV10Q9HCE1 1003 aaKnown RBP5.24□□□□□ -1.57
LIMA1-212ENST00000552491 FKBP14Q9NWM8 211 aa5.24□□□□□ -1.57
LIMA1-212ENST00000552491 TOR4AQ9NXH8 423 aa5.24□□□□□ -1.57
LIMA1-212ENST00000552491 ZNF226Q9NYT6 803 aa5.24□□□□□ -1.57
LIMA1-212ENST00000552491 DNMT3LQ9UJW3 386 aa5.24□□□□□ -1.57
LIMA1-212ENST00000552491 ZNF106Q9H2Y7 1883 aaKnown RBP5.24□□□□□ -1.57
LIMA1-212ENST00000552491 HELZP42694 1942 aaKnown RBP5.23□□□□□ -1.57
LIMA1-212ENST00000552491 CASP8AP2Q9UKL3 1982 aa5.23□□□□□ -1.57
LIMA1-212ENST00000552491 A0A1B0GVM2 712 aa5.23□□□□□ -1.57
LIMA1-212ENST00000552491 CTDSP2O14595 271 aa5.23□□□□□ -1.57
LIMA1-212ENST00000552491 HAT1O14929 419 aa5.23□□□□□ -1.57
LIMA1-212ENST00000552491 DYRK3O43781 588 aa5.23□□□□□ -1.57
LIMA1-212ENST00000552491 SH3BGRLO75368 114 aa5.23□□□□□ -1.57
LIMA1-212ENST00000552491 PTTG1O95997 202 aa5.23□□□□□ -1.57
LIMA1-212ENST00000552491 C9P02748 559 aa5.23□□□□□ -1.57
LIMA1-212ENST00000552491 OPN1SWP03999 348 aa5.23□□□□□ -1.57
LIMA1-212ENST00000552491 RPLP2P05387 115 aaKnown RBP5.23□□□□□ -1.57
LIMA1-212ENST00000552491 ASGR1P07306 291 aa5.23□□□□□ -1.57
LIMA1-212ENST00000552491 LAMP1P11279 417 aa5.23□□□□□ -1.57
LIMA1-212ENST00000552491 GABRB1P18505 474 aa5.23□□□□□ -1.57
LIMA1-212ENST00000552491 CD22P20273 847 aa5.23□□□□□ -1.57
LIMA1-212ENST00000552491 AOAHP28039 575 aa5.23□□□□□ -1.57
LIMA1-212ENST00000552491 CCR7P32248 378 aa5.23□□□□□ -1.57
LIMA1-212ENST00000552491 HNF1BP35680 557 aa5.23□□□□□ -1.57
LIMA1-212ENST00000552491 GGT2P36268 569 aa5.23□□□□□ -1.57
LIMA1-212ENST00000552491 SLC11A2P49281 568 aa5.23□□□□□ -1.57
LIMA1-212ENST00000552491 RHOAP61586 193 aa5.23□□□□□ -1.57
LIMA1-212ENST00000552491 ZNF45Q02386 682 aa5.23□□□□□ -1.57
LIMA1-212ENST00000552491 GPR17Q13304 367 aa5.23□□□□□ -1.57
LIMA1-212ENST00000552491 DUOXA1Q1HG43 343 aa5.23□□□□□ -1.57
LIMA1-212ENST00000552491 PTCHD3Q3KNS1 767 aa5.23□□□□□ -1.57
LIMA1-212ENST00000552491 ARMC12Q5T9G4 340 aa5.23□□□□□ -1.57
LIMA1-212ENST00000552491 NXNL2Q5VZ03 156 aa5.23□□□□□ -1.57
LIMA1-212ENST00000552491 PNCKQ6P2M8 343 aa5.23□□□□□ -1.57
LIMA1-212ENST00000552491 MACC1Q6ZN28 852 aa5.23□□□□□ -1.57
LIMA1-212ENST00000552491 MSANTD1Q6ZTZ1 278 aa5.23□□□□□ -1.57
LIMA1-212ENST00000552491 USP43Q70EL4 1123 aa5.23□□□□□ -1.57
LIMA1-212ENST00000552491 P3H2Q8IVL5 708 aa5.23□□□□□ -1.57
LIMA1-212ENST00000552491 SYNPOQ8N3V7 929 aa5.23□□□□□ -1.57
LIMA1-212ENST00000552491 SLC5A8Q8N695 610 aa5.23□□□□□ -1.57
LIMA1-212ENST00000552491 AMER2Q8N7J2 671 aa5.23□□□□□ -1.57
LIMA1-212ENST00000552491 ZNF675Q8TD23 568 aa5.23□□□□□ -1.57
LIMA1-212ENST00000552491 CHAC2Q8WUX2 184 aa5.23□□□□□ -1.57
LIMA1-212ENST00000552491 NELL1Q92832 810 aa5.23□□□□□ -1.57
LIMA1-212ENST00000552491 VOPP1Q96AW1 172 aa5.23□□□□□ -1.57
LIMA1-212ENST00000552491 MYO19Q96H55 970 aa5.23□□□□□ -1.57
LIMA1-212ENST00000552491 SPATA17Q96L03 361 aa5.23□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms