RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 CCR3P51677 355 aa15.76■□□□□ 0.11
CUX1-213ENST00000549414 DSTNP60981 165 aa15.76■□□□□ 0.11
CUX1-213ENST00000549414 HMGN2P46Q86SG4 172 aa15.76■□□□□ 0.11
CUX1-213ENST00000549414 CLEC14AQ86T13 490 aa15.76■□□□□ 0.11
CUX1-213ENST00000549414 CMTR2Q8IYT2 770 aaKnown RBP15.76■□□□□ 0.11
CUX1-213ENST00000549414 SLC29A1Q99808 456 aa15.76■□□□□ 0.11
CUX1-213ENST00000549414 SLC46A2Q9BY10 475 aa15.76■□□□□ 0.11
CUX1-213ENST00000549414 SDR39U1Q9NRG7 319 aaPredicted RBP15.76■□□□□ 0.11
CUX1-213ENST00000549414 PCDH10Q9P2E7 1040 aa15.76■□□□□ 0.11
CUX1-213ENST00000549414 COL4A5P29400 1685 aa15.76■□□□□ 0.11
CUX1-213ENST00000549414 LOC100130705A0A1B0GUX0 176 aa15.76■□□□□ 0.11
CUX1-213ENST00000549414 NDUFS4O43181 175 aa15.76■□□□□ 0.11
CUX1-213ENST00000549414 AVPR1BP47901 424 aa15.76■□□□□ 0.11
CUX1-213ENST00000549414 ADAM17P78536 824 aa15.76■□□□□ 0.11
CUX1-213ENST00000549414 XKR5Q6UX68 686 aa15.76■□□□□ 0.11
CUX1-213ENST00000549414 ZFAND4Q86XD8 727 aa15.76■□□□□ 0.11
CUX1-213ENST00000549414 OR4E2Q8NGC2 313 aa15.76■□□□□ 0.11
CUX1-213ENST00000549414 SMPDL3AQ92484 453 aa15.76■□□□□ 0.11
CUX1-213ENST00000549414 ATOH8Q96SQ7 321 aa15.76■□□□□ 0.11
CUX1-213ENST00000549414 NDEL1Q9GZM8 345 aa15.76■□□□□ 0.11
CUX1-213ENST00000549414 TIMMDC1Q9NPL8 285 aa15.76■□□□□ 0.11
CUX1-213ENST00000549414 SSR3Q9UNL2 185 aa15.76■□□□□ 0.11
CUX1-213ENST00000549414 PHF24Q9UPV7 400 aa15.76■□□□□ 0.11
CUX1-213ENST00000549414 ASNA1O43681 348 aa15.76■□□□□ 0.11
CUX1-213ENST00000549414 XPNPEP2O43895 674 aa15.76■□□□□ 0.11
CUX1-213ENST00000549414 PTNP21246 168 aa15.76■□□□□ 0.11
CUX1-213ENST00000549414 CPN2P22792 545 aa15.76■□□□□ 0.11
CUX1-213ENST00000549414 GTF2E2P29084 291 aaKnown RBP15.76■□□□□ 0.11
CUX1-213ENST00000549414 KCNC1P48547 511 aa15.76■□□□□ 0.11
CUX1-213ENST00000549414 PRR5P85299 388 aa15.76■□□□□ 0.11
CUX1-213ENST00000549414 ZXDBP98169 803 aa15.76■□□□□ 0.11
CUX1-213ENST00000549414 OGFRL1Q5TC84 451 aaPredicted RBP15.76■□□□□ 0.11
CUX1-213ENST00000549414 DDI2Q5TDH0 399 aa15.76■□□□□ 0.11
CUX1-213ENST00000549414 RNF130Q86XS8 419 aa15.76■□□□□ 0.11
CUX1-213ENST00000549414 SLC22A15Q8IZD6 547 aa15.76■□□□□ 0.11
CUX1-213ENST00000549414 SLC38A4Q969I6 547 aa15.76■□□□□ 0.11
CUX1-213ENST00000549414 KXD1Q9BQD3 176 aa15.76■□□□□ 0.11
CUX1-213ENST00000549414 POLR2J3Q9H1A7 115 aaKnown RBP15.76■□□□□ 0.11
CUX1-213ENST00000549414 THUMPD1Q9NXG2 353 aaKnown RBP15.76■□□□□ 0.11
CUX1-213ENST00000549414 TFECO14948 347 aaPredicted RBP15.76■□□□□ 0.11
CUX1-213ENST00000549414 EEDO75530 441 aaKnown RBP15.76■□□□□ 0.11
CUX1-213ENST00000549414 HLA-DQA2P01906 255 aa15.76■□□□□ 0.11
CUX1-213ENST00000549414 CFIP05156 583 aa15.76■□□□□ 0.11
CUX1-213ENST00000549414 RFC2P35250 354 aa15.76■□□□□ 0.11
CUX1-213ENST00000549414 RAB30Q15771 203 aa15.76■□□□□ 0.11
CUX1-213ENST00000549414 EGFLAMQ63HQ2 1017 aa15.76■□□□□ 0.11
CUX1-213ENST00000549414 SMARCD3Q6STE5 483 aa15.76■□□□□ 0.11
CUX1-213ENST00000549414 RSPO2Q6UXX9 243 aaPredicted RBP15.76■□□□□ 0.11
CUX1-213ENST00000549414 CADM2Q8N3J6 435 aa15.76■□□□□ 0.11
CUX1-213ENST00000549414 ZNF671Q8TAW3 534 aa15.76■□□□□ 0.11
CUX1-213ENST00000549414 TSPEARQ8WU66 669 aa15.76■□□□□ 0.11
CUX1-213ENST00000549414 LMAN2LQ9H0V9 348 aa15.76■□□□□ 0.11
CUX1-213ENST00000549414 MARCH7Q9H992 704 aa15.76■□□□□ 0.11
CUX1-213ENST00000549414 FAM120CQ9NX05 1096 aaKnown RBP15.76■□□□□ 0.11
CUX1-213ENST00000549414 PRSS21Q9Y6M0 314 aa15.76■□□□□ 0.11
CUX1-213ENST00000549414 TRIOBPQ9H2D6 2365 aa15.75■□□□□ 0.11
CUX1-213ENST00000549414 SCN1AP35498 2009 aa15.75■□□□□ 0.11
CUX1-213ENST00000549414 LATO43561 262 aa15.75■□□□□ 0.11
CUX1-213ENST00000549414 TSC22D2O75157 780 aa15.75■□□□□ 0.11
CUX1-213ENST00000549414 SLC16A8O95907 504 aa15.75■□□□□ 0.11
CUX1-213ENST00000549414 CTSAP10619 480 aa15.75■□□□□ 0.11
CUX1-213ENST00000549414 PTX3P26022 381 aaPredicted RBP15.75■□□□□ 0.11
CUX1-213ENST00000549414 ZNF846Q147U1 533 aa15.75■□□□□ 0.11
CUX1-213ENST00000549414 CLECL1Q8IZS7 167 aa15.75■□□□□ 0.11
CUX1-213ENST00000549414 ZNF784Q8NCA9 323 aaPredicted RBP15.75■□□□□ 0.11
CUX1-213ENST00000549414 JPH3Q8WXH2 748 aaPredicted RBP15.75■□□□□ 0.11
CUX1-213ENST00000549414 C17orf62Q9BQA9 187 aa15.75■□□□□ 0.11
CUX1-213ENST00000549414 POLMQ9NP87 494 aaPredicted RBP15.75■□□□□ 0.11
CUX1-213ENST00000549414 CACNA1GO43497 2377 aa15.75■□□□□ 0.11
CUX1-213ENST00000549414 ARID1BQ8NFD5 2236 aaPredicted RBP15.75■□□□□ 0.11
CUX1-213ENST00000549414 CD247P20963 164 aa15.75■□□□□ 0.11
CUX1-213ENST00000549414 MGAT3Q09327 533 aa15.75■□□□□ 0.11
CUX1-213ENST00000549414 AMZ1Q400G9 498 aa15.75■□□□□ 0.11
CUX1-213ENST00000549414 ENPP6Q6UWR7 440 aa15.75■□□□□ 0.11
CUX1-213ENST00000549414 LARP4Q71RC2 724 aaKnown RBP eCLIP15.75■□□□□ 0.119e-6■■■■□ 21.5
CUX1-213ENST00000549414 FGD2Q7Z6J4 655 aa15.75■□□□□ 0.11
CUX1-213ENST00000549414 GPR150Q8NGU9 434 aa15.75■□□□□ 0.11
CUX1-213ENST00000549414 PCBD2Q9H0N5 130 aa15.75■□□□□ 0.11
CUX1-213ENST00000549414 ABCB9Q9NP78 766 aa15.75■□□□□ 0.11
CUX1-213ENST00000549414 SMOXQ9NWM0 555 aa15.75■□□□□ 0.11
CUX1-213ENST00000549414 ZNF624Q9P2J8 865 aaPredicted RBP15.75■□□□□ 0.11
CUX1-213ENST00000549414 TNKS1BP1Q9C0C2 1729 aaKnown RBP15.75■□□□□ 0.11
CUX1-213ENST00000549414 A0A1W2PP55 124 aa15.75■□□□□ 0.11
CUX1-213ENST00000549414 I6L893 689 aaPredicted RBP15.75■□□□□ 0.11
CUX1-213ENST00000549414 GNB5O14775 395 aa15.75■□□□□ 0.11
CUX1-213ENST00000549414 SOX14O95416 240 aa15.75■□□□□ 0.11
CUX1-213ENST00000549414 TBPL1P62380 186 aa15.75■□□□□ 0.11
CUX1-213ENST00000549414 GALNT1Q10472 559 aaPredicted RBP15.75■□□□□ 0.11
CUX1-213ENST00000549414 ZBED5Q49AG3 693 aa15.75■□□□□ 0.11
CUX1-213ENST00000549414 SLC30A3Q99726 388 aa15.75■□□□□ 0.11
CUX1-213ENST00000549414 ACSL6Q9UKU0 697 aa15.75■□□□□ 0.11
CUX1-213ENST00000549414 J3QRK9 145 aa15.74■□□□□ 0.11
CUX1-213ENST00000549414 ZNF155Q12901 538 aaPredicted RBP15.74■□□□□ 0.11
CUX1-213ENST00000549414 CLEC12AQ5QGZ9 265 aa15.74■□□□□ 0.11
CUX1-213ENST00000549414 FAM91A1Q658Y4 838 aa15.74■□□□□ 0.11
CUX1-213ENST00000549414 TSTD1Q8NFU3 115 aa15.74■□□□□ 0.11
CUX1-213ENST00000549414 FBXL8Q96CD0 374 aa15.74■□□□□ 0.11
CUX1-213ENST00000549414 SPATA7Q9P0W8 599 aa15.74■□□□□ 0.11
CUX1-213ENST00000549414 ZNF99A8MXY4 864 aaPredicted RBP15.74■□□□□ 0.11
CUX1-213ENST00000549414 ALDOCP09972 364 aaKnown RBP15.74■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms