RNA–Protein interactions for RNA: ENST00000546534.1

SCAF11-208, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 3

Gene SCAF11, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-208ENST00000546534 CD163Q86VB7 1156 aa12□□□□□ -0.49
SCAF11-208ENST00000546534 HORMAD2Q8N7B1 307 aa12□□□□□ -0.49
SCAF11-208ENST00000546534 FAM71DQ8N9W8 422 aa12□□□□□ -0.49
SCAF11-208ENST00000546534 OR52K1Q8NGK4 314 aa12□□□□□ -0.49
SCAF11-208ENST00000546534 M1APQ8TC57 530 aa12□□□□□ -0.49
SCAF11-208ENST00000546534 RERGQ96A58 199 aaPredicted RBP12□□□□□ -0.49
SCAF11-208ENST00000546534 OLFM1Q99784 485 aa12□□□□□ -0.49
SCAF11-208ENST00000546534 MMP25Q9NPA2 562 aa12□□□□□ -0.49
SCAF11-208ENST00000546534 KCNJ16Q9NPI9 418 aa12□□□□□ -0.49
SCAF11-208ENST00000546534 ABHD10Q9NUJ1 306 aa12□□□□□ -0.49
SCAF11-208ENST00000546534 LRFN1Q9P244 771 aa12□□□□□ -0.49
SCAF11-208ENST00000546534 PCYOX1Q9UHG3 505 aa12□□□□□ -0.49
SCAF11-208ENST00000546534 GNPTGQ9UJJ9 305 aa12□□□□□ -0.49
SCAF11-208ENST00000546534 A0A1B0GTH9 108 aa11.99□□□□□ -0.49
SCAF11-208ENST00000546534 TMEM200CA6NKL6 621 aa11.99□□□□□ -0.49
SCAF11-208ENST00000546534 TXNDC9O14530 226 aa11.99□□□□□ -0.49
SCAF11-208ENST00000546534 PRMT5O14744 637 aaPredicted RBP11.99□□□□□ -0.49
SCAF11-208ENST00000546534 PSMD3O43242 534 aa11.99□□□□□ -0.49
SCAF11-208ENST00000546534 NME2P1O60361 137 aa11.99□□□□□ -0.49
SCAF11-208ENST00000546534 SLC25A12O75746 678 aa11.99□□□□□ -0.49
SCAF11-208ENST00000546534 STATHP02808 62 aa11.99□□□□□ -0.49
SCAF11-208ENST00000546534 CYC1P08574 325 aa11.99□□□□□ -0.49
SCAF11-208ENST00000546534 ERGP11308 486 aa11.99□□□□□ -0.49
SCAF11-208ENST00000546534 NME2P22392 152 aa11.99□□□□□ -0.49
SCAF11-208ENST00000546534 RPA3P35244 121 aaPredicted RBP11.99□□□□□ -0.49
SCAF11-208ENST00000546534 XCR1P46094 333 aa11.99□□□□□ -0.49
SCAF11-208ENST00000546534 AVPR1BP47901 424 aa11.99□□□□□ -0.49
SCAF11-208ENST00000546534 AGTR2P50052 363 aa11.99□□□□□ -0.49
SCAF11-208ENST00000546534 FOLH1Q04609 750 aa11.99□□□□□ -0.49
SCAF11-208ENST00000546534 ACVR1Q04771 509 aa11.99□□□□□ -0.49
SCAF11-208ENST00000546534 FOXD4Q12950 439 aaPredicted RBP11.99□□□□□ -0.49
SCAF11-208ENST00000546534 MYBPHQ13203 477 aa11.99□□□□□ -0.49
SCAF11-208ENST00000546534 TSTA3Q13630 321 aaPredicted RBP11.99□□□□□ -0.49
SCAF11-208ENST00000546534 NDUFA9Q16795 377 aa11.99□□□□□ -0.49
SCAF11-208ENST00000546534 PTRHD1Q6GMV3 140 aaKnown RBP11.99□□□□□ -0.49
SCAF11-208ENST00000546534 TMEM211Q6ICI0 200 aa11.99□□□□□ -0.49
SCAF11-208ENST00000546534 C11orf63Q6NUN7 778 aa11.99□□□□□ -0.49
SCAF11-208ENST00000546534 AADACL2Q6P093 401 aa11.99□□□□□ -0.49
SCAF11-208ENST00000546534 PRSS41Q7RTY9 318 aa11.99□□□□□ -0.49
SCAF11-208ENST00000546534 PLD3Q8IV08 490 aa11.99□□□□□ -0.49
SCAF11-208ENST00000546534 CCDC71Q8IV32 467 aaPredicted RBP11.99□□□□□ -0.49
SCAF11-208ENST00000546534 SLC5A8Q8N695 610 aa11.99□□□□□ -0.49
SCAF11-208ENST00000546534 ZNF511Q8NB15 262 aa11.99□□□□□ -0.49
SCAF11-208ENST00000546534 MAGEC3Q8TD91 643 aa11.99□□□□□ -0.49
SCAF11-208ENST00000546534 SMPDL3AQ92484 453 aa11.99□□□□□ -0.49
SCAF11-208ENST00000546534 FOPNLQ96NB1 174 aa11.99□□□□□ -0.49
SCAF11-208ENST00000546534 CDCP1Q9H5V8 836 aa11.99□□□□□ -0.49
SCAF11-208ENST00000546534 DLL4Q9NR61 685 aa11.99□□□□□ -0.49
SCAF11-208ENST00000546534 HCN3Q9P1Z3 774 aa11.99□□□□□ -0.49
SCAF11-208ENST00000546534 MARCH4Q9P2E8 410 aaPredicted RBP11.99□□□□□ -0.49
SCAF11-208ENST00000546534 SCN2AQ99250 2005 aa11.98□□□□□ -0.49
SCAF11-208ENST00000546534 ZNF469Q96JG9 3925 aaPredicted RBP11.98□□□□□ -0.49
SCAF11-208ENST00000546534 H0YIG0 161 aa11.98□□□□□ -0.49
SCAF11-208ENST00000546534 ZWINTO95229 277 aa11.98□□□□□ -0.49
SCAF11-208ENST00000546534 PKMP14618 531 aaKnown RBP11.98□□□□□ -0.49
SCAF11-208ENST00000546534 EZRP15311 586 aaKnown RBP11.98□□□□□ -0.49
SCAF11-208ENST00000546534 PTPN7P35236 360 aa11.98□□□□□ -0.49
SCAF11-208ENST00000546534 GDF10P55107 478 aa11.98□□□□□ -0.49
SCAF11-208ENST00000546534 PRAMEP78395 509 aa11.98□□□□□ -0.49
SCAF11-208ENST00000546534 PRDX1Q06830 199 aaKnown RBP11.98□□□□□ -0.49
SCAF11-208ENST00000546534 CDH17Q12864 832 aa11.98□□□□□ -0.49
SCAF11-208ENST00000546534 PTK6Q13882 451 aa11.98□□□□□ -0.49
SCAF11-208ENST00000546534 CEBPEQ15744 281 aa11.98□□□□□ -0.49
SCAF11-208ENST00000546534 P3H1Q32P28 736 aa11.98□□□□□ -0.49
SCAF11-208ENST00000546534 SFT2D3Q587I9 215 aa11.98□□□□□ -0.49
SCAF11-208ENST00000546534 ICE2Q659A1 982 aa11.98□□□□□ -0.49
SCAF11-208ENST00000546534 CAVIN1Q6NZI2 390 aaKnown RBP11.98□□□□□ -0.49
SCAF11-208ENST00000546534 PAPD4Q6PIY7 484 aaKnown RBP11.98□□□□□ -0.49
SCAF11-208ENST00000546534 OTOAQ7RTW8 1153 aa11.98□□□□□ -0.49
SCAF11-208ENST00000546534 LINC00523Q86TU6 105 aa11.98□□□□□ -0.49
SCAF11-208ENST00000546534 ZNF227Q86WZ6 799 aa11.98□□□□□ -0.49
SCAF11-208ENST00000546534 RPRMLQ8N4K4 120 aa11.98□□□□□ -0.49
SCAF11-208ENST00000546534 OR9A1PQ8NGU1 263 aa11.98□□□□□ -0.49
SCAF11-208ENST00000546534 OR51Q1Q8NH59 317 aa11.98□□□□□ -0.49
SCAF11-208ENST00000546534 RND1Q92730 232 aa11.98□□□□□ -0.49
SCAF11-208ENST00000546534 NINJ1Q92982 152 aa11.98□□□□□ -0.49
SCAF11-208ENST00000546534 MRFAP1L1Q96HT8 127 aa11.98□□□□□ -0.49
SCAF11-208ENST00000546534 PANX3Q96QZ0 392 aa11.98□□□□□ -0.49
SCAF11-208ENST00000546534 P2RY12Q9H244 342 aa11.98□□□□□ -0.49
SCAF11-208ENST00000546534 LIME1Q9H400 295 aa11.98□□□□□ -0.49
SCAF11-208ENST00000546534 DNAJB12Q9NXW2 375 aaKnown RBP11.98□□□□□ -0.49
SCAF11-208ENST00000546534 TAC3Q9UHF0 121 aa11.98□□□□□ -0.49
SCAF11-208ENST00000546534 RIMKLBQ9ULI2 386 aa11.98□□□□□ -0.49
SCAF11-208ENST00000546534 TFR2Q9UP52 801 aa11.98□□□□□ -0.49
SCAF11-208ENST00000546534 RPH3AQ9Y2J0 694 aaPredicted RBP11.98□□□□□ -0.49
SCAF11-208ENST00000546534 PCDHA3Q9Y5H8 950 aa11.98□□□□□ -0.49
SCAF11-208ENST00000546534 INTS1Q8N201 2190 aaKnown RBP11.98□□□□□ -0.49
SCAF11-208ENST00000546534 HCFC1P51610 2035 aa11.98□□□□□ -0.49
SCAF11-208ENST00000546534 ABCA4P78363 2273 aa11.97□□□□□ -0.49
SCAF11-208ENST00000546534 GOLGA6L19H0YKK7 550 aa11.97□□□□□ -0.49
SCAF11-208ENST00000546534 NDC80O14777 642 aa11.97□□□□□ -0.49
SCAF11-208ENST00000546534 HAT1O14929 419 aa11.97□□□□□ -0.49
SCAF11-208ENST00000546534 TFECO14948 347 aaPredicted RBP11.97□□□□□ -0.49
SCAF11-208ENST00000546534 KPNA5O15131 536 aa11.97□□□□□ -0.49
SCAF11-208ENST00000546534 ZNF189O75820 626 aaPredicted RBP11.97□□□□□ -0.49
SCAF11-208ENST00000546534 NSA2O95478 260 aaKnown RBP11.97□□□□□ -0.49
SCAF11-208ENST00000546534 IL1RNP18510 177 aa11.97□□□□□ -0.49
SCAF11-208ENST00000546534 ADRA1DP25100 572 aa11.97□□□□□ -0.49
SCAF11-208ENST00000546534 CTNNA1P35221 906 aaKnown RBP11.97□□□□□ -0.49
SCAF11-208ENST00000546534 RFC3P40938 356 aa11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms