RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 SLC5A8Q8N695 610 aa14.52□□□□□ -0.08
USP28-214ENST00000545540 APH1BQ8WW43 257 aa14.52□□□□□ -0.08
USP28-214ENST00000545540 NIPSNAP1Q9BPW8 284 aa14.52□□□□□ -0.08
USP28-214ENST00000545540 DUSP26Q9BV47 211 aa14.52□□□□□ -0.08
USP28-214ENST00000545540 RIOK2Q9BVS4 552 aaKnown RBP14.52□□□□□ -0.08
USP28-214ENST00000545540 SLC12A9Q9BXP2 914 aa14.52□□□□□ -0.08
USP28-214ENST00000545540 OR51B5Q9H339 312 aa14.52□□□□□ -0.08
USP28-214ENST00000545540 MARCH7Q9H992 704 aa14.52□□□□□ -0.08
USP28-214ENST00000545540 IL21Q9HBE4 155 aa14.52□□□□□ -0.08
USP28-214ENST00000545540 HMG20AQ9NP66 347 aa14.52□□□□□ -0.08
USP28-214ENST00000545540 TBCCD1Q9NVR7 557 aa14.52□□□□□ -0.08
USP28-214ENST00000545540 TPRKBQ9Y3C4 175 aa14.52□□□□□ -0.08
USP28-214ENST00000545540 INSL5Q9Y5Q6 135 aa14.52□□□□□ -0.08
USP28-214ENST00000545540 SNX8Q9Y5X2 465 aa14.52□□□□□ -0.08
USP28-214ENST00000545540 EFCAB9A8MZ26 197 aa14.52□□□□□ -0.09
USP28-214ENST00000545540 PLK4O00444 970 aa14.52□□□□□ -0.09
USP28-214ENST00000545540 TEX28O15482 410 aa14.52□□□□□ -0.09
USP28-214ENST00000545540 ABLIM3O94929 683 aa14.52□□□□□ -0.09
USP28-214ENST00000545540 GADD45AP24522 165 aa14.52□□□□□ -0.09
USP28-214ENST00000545540 DNAJA1P31689 397 aaKnown RBP14.52□□□□□ -0.09
USP28-214ENST00000545540 PTGER1P34995 402 aa14.52□□□□□ -0.09
USP28-214ENST00000545540 EPHB3P54753 998 aa14.52□□□□□ -0.09
USP28-214ENST00000545540 RPS26P62854 115 aaKnown RBP14.52□□□□□ -0.09
USP28-214ENST00000545540 TMPRSS11BQ86T26 416 aa14.52□□□□□ -0.09
USP28-214ENST00000545540 CCDC103Q8IW40 242 aa14.52□□□□□ -0.09
USP28-214ENST00000545540 CMTM7Q96FZ5 175 aa14.52□□□□□ -0.09
USP28-214ENST00000545540 KLHL25Q9H0H3 589 aa14.52□□□□□ -0.09
USP28-214ENST00000545540 MRPL17Q9NRX2 175 aaKnown RBP14.52□□□□□ -0.09
USP28-214ENST00000545540 KIAA0100Q14667 2235 aaKnown RBP14.52□□□□□ -0.09
USP28-214ENST00000545540 PRUNE2Q8WUY3 3088 aa14.52□□□□□ -0.09
USP28-214ENST00000545540 RYKP34925 604 aa14.51□□□□□ -0.09
USP28-214ENST00000545540 CSNK1DP48730 415 aa14.51□□□□□ -0.09
USP28-214ENST00000545540 ZNF846Q147U1 533 aa14.51□□□□□ -0.09
USP28-214ENST00000545540 STARD3Q14849 445 aa14.51□□□□□ -0.09
USP28-214ENST00000545540 ZNF385BQ569K4 471 aa14.51□□□□□ -0.09
USP28-214ENST00000545540 USP45Q70EL2 814 aa14.51□□□□□ -0.09
USP28-214ENST00000545540 SYTL1Q8IYJ3 562 aa14.51□□□□□ -0.09
USP28-214ENST00000545540 ZNF740Q8NDX6 193 aa14.51□□□□□ -0.09
USP28-214ENST00000545540 FAM83FQ8NEG4 500 aaPredicted RBP14.51□□□□□ -0.09
USP28-214ENST00000545540 COPS4Q9BT78 406 aa14.51□□□□□ -0.09
USP28-214ENST00000545540 WRAP53Q9BUR4 548 aaKnown RBP14.51□□□□□ -0.09
USP28-214ENST00000545540 AKIP1Q9NQ31 210 aa14.51□□□□□ -0.09
USP28-214ENST00000545540 OGDHLQ9ULD0 1010 aa14.51□□□□□ -0.09
USP28-214ENST00000545540 RNF6Q9Y252 685 aa14.51□□□□□ -0.09
USP28-214ENST00000545540 HCFC2Q9Y5Z7 792 aa14.51□□□□□ -0.09
USP28-214ENST00000545540 CKAP5Q14008 2032 aa14.51□□□□□ -0.09
USP28-214ENST00000545540 CCDC159P0C7I6 412 aa14.51□□□□□ -0.09
USP28-214ENST00000545540 PRPS2P11908 318 aa14.51□□□□□ -0.09
USP28-214ENST00000545540 SPINT3P49223 89 aa14.51□□□□□ -0.09
USP28-214ENST00000545540 RPS13P62277 151 aaKnown RBP14.51□□□□□ -0.09
USP28-214ENST00000545540 SMARCB1Q12824 385 aa14.51□□□□□ -0.09
USP28-214ENST00000545540 GPR33Q49SQ1 333 aa14.51□□□□□ -0.09
USP28-214ENST00000545540 KIAA1614Q5VZ46 1190 aa14.51□□□□□ -0.09
USP28-214ENST00000545540 CACUL1Q86Y37 369 aa14.51□□□□□ -0.09
USP28-214ENST00000545540 C2orf15Q8WU43 125 aaKnown RBP14.51□□□□□ -0.09
USP28-214ENST00000545540 HEPHQ9BQS7 1158 aa14.51□□□□□ -0.09
USP28-214ENST00000545540 OR51E2Q9H255 320 aa14.51□□□□□ -0.09
USP28-214ENST00000545540 DUSP21Q9H596 190 aa14.51□□□□□ -0.09
USP28-214ENST00000545540 SRRDQ9UH36 339 aa14.51□□□□□ -0.09
USP28-214ENST00000545540 PAIP2BQ9ULR5 123 aaKnown RBP14.51□□□□□ -0.09
USP28-214ENST00000545540 GFRA2O00451 464 aa14.51□□□□□ -0.09
USP28-214ENST00000545540 KDM1AO60341 852 aa14.51□□□□□ -0.09
USP28-214ENST00000545540 GABARAPO95166 117 aa14.51□□□□□ -0.09
USP28-214ENST00000545540 FEN1P39748 380 aaKnown RBP14.51□□□□□ -0.09
USP28-214ENST00000545540 Q8N9G6 341 aaPredicted RBP14.51□□□□□ -0.09
USP28-214ENST00000545540 MCFD2Q8NI22 146 aa14.51□□□□□ -0.09
USP28-214ENST00000545540 Q96MT0 163 aa14.51□□□□□ -0.09
USP28-214ENST00000545540 DACH2Q96NX9 599 aa14.51□□□□□ -0.09
USP28-214ENST00000545540 TCF25Q9BQ70 676 aa14.51□□□□□ -0.09
USP28-214ENST00000545540 CHCHD6Q9BRQ6 235 aa14.51□□□□□ -0.09
USP28-214ENST00000545540 TM9SF3Q9HD45 589 aa14.51□□□□□ -0.09
USP28-214ENST00000545540 C5AR2Q9P296 337 aa14.51□□□□□ -0.09
USP28-214ENST00000545540 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP14.5□□□□□ -0.09
USP28-214ENST00000545540 MGAT4DA6NG13 374 aa14.5□□□□□ -0.09
USP28-214ENST00000545540 KPNA5O15131 536 aa14.5□□□□□ -0.09
USP28-214ENST00000545540 GCM2O75603 506 aaPredicted RBP14.5□□□□□ -0.09
USP28-214ENST00000545540 HOXB9P17482 250 aaPredicted RBP14.5□□□□□ -0.09
USP28-214ENST00000545540 FPR1P21462 350 aa14.5□□□□□ -0.09
USP28-214ENST00000545540 SNRPD1P62314 119 aaKnown RBP14.5□□□□□ -0.09
USP28-214ENST00000545540 GSTM4Q03013 218 aa14.5□□□□□ -0.09
USP28-214ENST00000545540 ILF2Q12905 390 aaKnown RBP14.5□□□□□ -0.09
USP28-214ENST00000545540 CPTPQ5TA50 214 aa14.5□□□□□ -0.09
USP28-214ENST00000545540 NIPAL1Q6NVV3 410 aa14.5□□□□□ -0.09
USP28-214ENST00000545540 C22orf39Q6P5X5 142 aa14.5□□□□□ -0.09
USP28-214ENST00000545540 OLIG3Q7RTU3 272 aa14.5□□□□□ -0.09
USP28-214ENST00000545540 TSEN54Q7Z6J9 526 aaKnown RBP14.5□□□□□ -0.09
USP28-214ENST00000545540 C11orf74Q86VG3 221 aa14.5□□□□□ -0.09
USP28-214ENST00000545540 FAM217AQ8IXS0 508 aa14.5□□□□□ -0.09
USP28-214ENST00000545540 RBM12BQ8IXT5 1001 aaKnown RBP14.5□□□□□ -0.09
USP28-214ENST00000545540 OR4A15Q8NGL6 344 aa14.5□□□□□ -0.09
USP28-214ENST00000545540 HUS1BQ8NHY5 278 aa14.5□□□□□ -0.09
USP28-214ENST00000545540 RDH12Q96NR8 316 aa14.5□□□□□ -0.09
USP28-214ENST00000545540 ZNF300Q96RE9 604 aaPredicted RBP14.5□□□□□ -0.09
USP28-214ENST00000545540 APOL4Q9BPW4 351 aa14.5□□□□□ -0.09
USP28-214ENST00000545540 SLC29A3Q9BZD2 475 aa14.5□□□□□ -0.09
USP28-214ENST00000545540 DCSTAMPQ9H295 470 aa14.5□□□□□ -0.09
USP28-214ENST00000545540 GIN1Q9NXP7 522 aa14.5□□□□□ -0.09
USP28-214ENST00000545540 MAN2B2Q9Y2E5 1009 aa14.5□□□□□ -0.09
USP28-214ENST00000545540 PCDHGA6Q9Y5G7 932 aa14.5□□□□□ -0.09
USP28-214ENST00000545540 ANTXRLA6NF34 631 aa14.5□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 78.4 ms