RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 SERPINI2O75830 405 aa5.1□□□□□ -1.59
USP28-213ENST00000544967 DKK1O94907 266 aa5.1□□□□□ -1.59
USP28-213ENST00000544967 PRLP01236 227 aa5.1□□□□□ -1.59
USP28-213ENST00000544967 CAPN1P07384 714 aa5.1□□□□□ -1.59
USP28-213ENST00000544967 ALDOCP09972 364 aaKnown RBP5.1□□□□□ -1.59
USP28-213ENST00000544967 MSH3P20585 1137 aa5.1□□□□□ -1.59
USP28-213ENST00000544967 F8A1P23610 371 aa5.1□□□□□ -1.59
USP28-213ENST00000544967 HMGCLP35914 325 aa5.1□□□□□ -1.59
USP28-213ENST00000544967 GRIA1P42261 906 aa5.1□□□□□ -1.59
USP28-213ENST00000544967 NRIP1P48552 1158 aa5.1□□□□□ -1.59
USP28-213ENST00000544967 EFR3AQ14156 821 aa5.1□□□□□ -1.59
USP28-213ENST00000544967 GBX1Q14549 363 aa5.1□□□□□ -1.59
USP28-213ENST00000544967 Q5BKY6 102 aa5.1□□□□□ -1.59
USP28-213ENST00000544967 TCEAL5Q5H9L2 206 aa5.1□□□□□ -1.59
USP28-213ENST00000544967 CYP20A1Q6UW02 462 aa5.1□□□□□ -1.59
USP28-213ENST00000544967 LCLAT1Q6UWP7 414 aa5.1□□□□□ -1.59
USP28-213ENST00000544967 CYHR1Q6ZMK1 362 aa5.1□□□□□ -1.59
USP28-213ENST00000544967 PDZD4Q76G19 769 aaPredicted RBP5.1□□□□□ -1.59
USP28-213ENST00000544967 TRMT1LQ7Z2T5 733 aaKnown RBP5.1□□□□□ -1.59
USP28-213ENST00000544967 B3GNT8Q7Z7M8 397 aa5.1□□□□□ -1.59
USP28-213ENST00000544967 RBM23Q86U06 439 aaKnown RBP5.1□□□□□ -1.59
USP28-213ENST00000544967 GPAT4Q86UL3 456 aa5.1□□□□□ -1.59
USP28-213ENST00000544967 STX19Q8N4C7 294 aa5.1□□□□□ -1.59
USP28-213ENST00000544967 FAM83FQ8NEG4 500 aaPredicted RBP5.1□□□□□ -1.59
USP28-213ENST00000544967 OR7G3Q8NG95 312 aa5.1□□□□□ -1.59
USP28-213ENST00000544967 BTN2A2Q8WVV5 523 aa5.1□□□□□ -1.59
USP28-213ENST00000544967 SMG7Q92540 1137 aaKnown RBP5.1□□□□□ -1.59
USP28-213ENST00000544967 REPS1Q96D71 796 aa5.1□□□□□ -1.59
USP28-213ENST00000544967 OMA1Q96E52 524 aa5.1□□□□□ -1.59
USP28-213ENST00000544967 NECTIN4Q96NY8 510 aa5.1□□□□□ -1.59
USP28-213ENST00000544967 FAM193BQ96PV7 902 aaPredicted RBP5.1□□□□□ -1.59
USP28-213ENST00000544967 C1QTNF3Q9BXJ4 246 aa5.1□□□□□ -1.59
USP28-213ENST00000544967 ALOXE3Q9BYJ1 711 aa5.1□□□□□ -1.59
USP28-213ENST00000544967 ROGDIQ9GZN7 287 aa5.1□□□□□ -1.59
USP28-213ENST00000544967 SMOC2Q9H3U7 446 aa5.1□□□□□ -1.59
USP28-213ENST00000544967 PRDM12Q9H4Q4 367 aa5.1□□□□□ -1.59
USP28-213ENST00000544967 POMKQ9H5K3 350 aa5.1□□□□□ -1.59
USP28-213ENST00000544967 IL1RAPQ9NPH3 570 aa5.1□□□□□ -1.59
USP28-213ENST00000544967 AIG1Q9NVV5 245 aa5.1□□□□□ -1.59
USP28-213ENST00000544967 KIF17Q9P2E2 1029 aa5.1□□□□□ -1.59
USP28-213ENST00000544967 ADGRE2Q9UHX3 823 aa5.1□□□□□ -1.59
USP28-213ENST00000544967 NDRG4Q9ULP0 352 aaKnown RBP5.1□□□□□ -1.59
USP28-213ENST00000544967 MAPRE3Q9UPY8 281 aa5.1□□□□□ -1.59
USP28-213ENST00000544967 RNF6Q9Y252 685 aa5.1□□□□□ -1.59
USP28-213ENST00000544967 ZNF175Q9Y473 711 aa5.1□□□□□ -1.59
USP28-213ENST00000544967 GPR45Q9Y5Y3 372 aa5.1□□□□□ -1.59
USP28-213ENST00000544967 TNRC6BQ9UPQ9 1833 aaKnown RBP5.1□□□□□ -1.59
USP28-213ENST00000544967 IQCMA0A1B0GVH7 501 aa5.1□□□□□ -1.59
USP28-213ENST00000544967 GFRA2O00451 464 aa5.1□□□□□ -1.59
USP28-213ENST00000544967 SULT1B1O43704 296 aa5.1□□□□□ -1.59
USP28-213ENST00000544967 FZD6O60353 706 aa5.1□□□□□ -1.59
USP28-213ENST00000544967 RHOBTB1O94844 696 aa5.1□□□□□ -1.59
USP28-213ENST00000544967 PDGFRAP16234 1089 aa5.1□□□□□ -1.59
USP28-213ENST00000544967 HMGA1P17096 107 aaKnown RBP5.1□□□□□ -1.59
USP28-213ENST00000544967 PRKACAP17612 351 aa5.1□□□□□ -1.59
USP28-213ENST00000544967 ALOX12P18054 663 aa5.1□□□□□ -1.59
USP28-213ENST00000544967 NFKB1P19838 968 aa5.1□□□□□ -1.59
USP28-213ENST00000544967 DDX6P26196 483 aaKnown RBP eCLIP5.1□□□□□ -1.59
USP28-213ENST00000544967 PCSK1P29120 753 aa5.1□□□□□ -1.59
USP28-213ENST00000544967 RFX2P48378 723 aa5.1□□□□□ -1.59
USP28-213ENST00000544967 CLCN5P51795 746 aa5.1□□□□□ -1.59
USP28-213ENST00000544967 KCNK10P57789 538 aa5.1□□□□□ -1.59
USP28-213ENST00000544967 YWHAHQ04917 246 aaPredicted RBP5.1□□□□□ -1.59
USP28-213ENST00000544967 SCN1BQ07699 218 aa5.1□□□□□ -1.59
USP28-213ENST00000544967 PRPSAP1Q14558 356 aa5.1□□□□□ -1.59
USP28-213ENST00000544967 USP10Q14694 798 aaKnown RBP5.1□□□□□ -1.59
USP28-213ENST00000544967 CA9Q16790 459 aa5.1□□□□□ -1.59
USP28-213ENST00000544967 COL28A1Q2UY09 1125 aa5.1□□□□□ -1.59
USP28-213ENST00000544967 PAN2Q504Q3 1202 aaKnown RBP5.1□□□□□ -1.59
USP28-213ENST00000544967 ARTNQ5T4W7 220 aa5.1□□□□□ -1.59
USP28-213ENST00000544967 FAM102AQ5T9C2 384 aaPredicted RBP5.1□□□□□ -1.59
USP28-213ENST00000544967 LRRC66Q68CR7 880 aa5.1□□□□□ -1.59
USP28-213ENST00000544967 PM20D1Q6GTS8 502 aa5.1□□□□□ -1.59
USP28-213ENST00000544967 IKBIPQ70UQ0 350 aa5.1□□□□□ -1.59
USP28-213ENST00000544967 ZNF367Q7RTV3 350 aa5.1□□□□□ -1.59
USP28-213ENST00000544967 PRSS42Q7Z5A4 293 aa5.1□□□□□ -1.59
USP28-213ENST00000544967 TMEM150AQ86TG1 271 aa5.1□□□□□ -1.59
USP28-213ENST00000544967 STK32CQ86UX6 486 aa5.1□□□□□ -1.59
USP28-213ENST00000544967 LINC00518Q8N0U6 118 aa5.1□□□□□ -1.59
USP28-213ENST00000544967 DUSP18Q8NEJ0 188 aa5.1□□□□□ -1.59
USP28-213ENST00000544967 ITFG1Q8TB96 612 aa5.1□□□□□ -1.59
USP28-213ENST00000544967 NINJ1Q92982 152 aa5.1□□□□□ -1.59
USP28-213ENST00000544967 MYDGFQ969H8 173 aa5.1□□□□□ -1.59
USP28-213ENST00000544967 SGCZQ96LD1 299 aa5.1□□□□□ -1.59
USP28-213ENST00000544967 CSPG4P5Q96PW8 444 aa5.1□□□□□ -1.59
USP28-213ENST00000544967 MRPL45Q9BRJ2 306 aaKnown RBP5.1□□□□□ -1.59
USP28-213ENST00000544967 SLC6A15Q9H2J7 730 aa5.1□□□□□ -1.59
USP28-213ENST00000544967 FAM83DQ9H4H8 585 aa5.1□□□□□ -1.59
USP28-213ENST00000544967 SERHL2Q9H4I8 314 aa5.1□□□□□ -1.59
USP28-213ENST00000544967 DHX35Q9H5Z1 703 aaKnown RBP5.1□□□□□ -1.59
USP28-213ENST00000544967 SCPEP1Q9HB40 452 aa5.1□□□□□ -1.59
USP28-213ENST00000544967 ING3Q9NXR8 418 aa5.1□□□□□ -1.59
USP28-213ENST00000544967 GTSE1Q9NYZ3 720 aa5.1□□□□□ -1.59
USP28-213ENST00000544967 TMEFF2Q9UIK5 374 aaPredicted RBP5.1□□□□□ -1.59
USP28-213ENST00000544967 PRUNE2Q8WUY3 3088 aa5.09□□□□□ -1.59
USP28-213ENST00000544967 SZT2Q5T011 3432 aa5.09□□□□□ -1.59
USP28-213ENST00000544967 A8MT66 165 aa5.09□□□□□ -1.59
USP28-213ENST00000544967 ADAM12O43184 909 aa5.09□□□□□ -1.59
USP28-213ENST00000544967 HCN1O60741 890 aa5.09□□□□□ -1.59
USP28-213ENST00000544967 SLC22A5O76082 557 aa5.09□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms