RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 WFS1O76024 890 aa16.77■□□□□ 0.28
CLSTN3-210ENST00000540931 CLDN9O95484 217 aa16.77■□□□□ 0.28
CLSTN3-210ENST00000540931 PIM1P11309 404 aaPredicted RBP16.77■□□□□ 0.28
CLSTN3-210ENST00000540931 REEP5Q00765 189 aa16.77■□□□□ 0.28
CLSTN3-210ENST00000540931 RGS1Q08116 209 aa16.77■□□□□ 0.28
CLSTN3-210ENST00000540931 GALNT1Q10472 559 aaPredicted RBP16.77■□□□□ 0.28
CLSTN3-210ENST00000540931 CHIT1Q13231 466 aa16.77■□□□□ 0.28
CLSTN3-210ENST00000540931 ZIC1Q15915 447 aa16.77■□□□□ 0.28
CLSTN3-210ENST00000540931 GGTA1PQ4G0N0 100 aa16.77■□□□□ 0.28
CLSTN3-210ENST00000540931 FBXO42Q6P3S6 717 aa16.77■□□□□ 0.28
CLSTN3-210ENST00000540931 FOXR1Q6PIV2 292 aa16.77■□□□□ 0.28
CLSTN3-210ENST00000540931 GOLGA7Q7Z5G4 137 aa16.77■□□□□ 0.28
CLSTN3-210ENST00000540931 TMEM126BQ8IUX1 230 aa16.77■□□□□ 0.28
CLSTN3-210ENST00000540931 TRIM42Q8IWZ5 723 aa16.77■□□□□ 0.28
CLSTN3-210ENST00000540931 MFSD9Q8NBP5 474 aa16.77■□□□□ 0.28
CLSTN3-210ENST00000540931 ZNF483Q8TF39 744 aaPredicted RBP16.77■□□□□ 0.28
CLSTN3-210ENST00000540931 MVB12AQ96EY5 273 aa16.77■□□□□ 0.28
CLSTN3-210ENST00000540931 PPM1MQ96MI6 270 aa16.77■□□□□ 0.28
CLSTN3-210ENST00000540931 LRFN5Q96NI6 719 aa16.77■□□□□ 0.28
CLSTN3-210ENST00000540931 NDC1Q9BTX1 674 aa16.77■□□□□ 0.28
CLSTN3-210ENST00000540931 EML4Q9HC35 981 aaKnown RBP16.77■□□□□ 0.28
CLSTN3-210ENST00000540931 MED4Q9NPJ6 270 aa16.77■□□□□ 0.28
CLSTN3-210ENST00000540931 ZFP69BQ9UJL9 534 aa16.77■□□□□ 0.28
CLSTN3-210ENST00000540931 A0A0J9YVX5 310 aa16.76■□□□□ 0.27
CLSTN3-210ENST00000540931 FITM1A5D6W6 292 aa16.76■□□□□ 0.27
CLSTN3-210ENST00000540931 ANKDD1BA6NHY2 528 aa16.76■□□□□ 0.27
CLSTN3-210ENST00000540931 CDRT15L2A8MXV6 281 aa16.76■□□□□ 0.27
CLSTN3-210ENST00000540931 IQCJ-SCHIP1C9J366 451 aaPredicted RBP16.76■□□□□ 0.27
CLSTN3-210ENST00000540931 CASC3O15234 703 aaKnown RBP16.76■□□□□ 0.27
CLSTN3-210ENST00000540931 KLK3P07288 261 aaPredicted RBP16.76■□□□□ 0.27
CLSTN3-210ENST00000540931 CCL4P13236 92 aa16.76■□□□□ 0.27
CLSTN3-210ENST00000540931 GRK2P25098 689 aa16.76■□□□□ 0.27
CLSTN3-210ENST00000540931 GABRA4P48169 554 aa16.76■□□□□ 0.27
CLSTN3-210ENST00000540931 AGTR2P50052 363 aa16.76■□□□□ 0.27
CLSTN3-210ENST00000540931 CLCQ05315 142 aa16.76■□□□□ 0.27
CLSTN3-210ENST00000540931 LCP2Q13094 533 aa16.76■□□□□ 0.27
CLSTN3-210ENST00000540931 MUM1Q2TAK8 710 aa16.76■□□□□ 0.27
CLSTN3-210ENST00000540931 HHATQ5VTY9 493 aa16.76■□□□□ 0.27
CLSTN3-210ENST00000540931 GRHL2Q6ISB3 625 aa16.76■□□□□ 0.27
CLSTN3-210ENST00000540931 MED27Q6P2C8 311 aa16.76■□□□□ 0.27
CLSTN3-210ENST00000540931 SPNS2Q8IVW8 549 aa16.76■□□□□ 0.27
CLSTN3-210ENST00000540931 L3MBTL4Q8NA19 623 aa16.76■□□□□ 0.27
CLSTN3-210ENST00000540931 SRFBP1Q8NEF9 429 aaKnown RBP16.76■□□□□ 0.27
CLSTN3-210ENST00000540931 PROKR1Q8TCW9 393 aa16.76■□□□□ 0.27
CLSTN3-210ENST00000540931 USP7Q93009 1102 aa16.76■□□□□ 0.27
CLSTN3-210ENST00000540931 OR2A5Q96R48 311 aa16.76■□□□□ 0.27
CLSTN3-210ENST00000540931 CENPKQ9BS16 269 aa16.76■□□□□ 0.27
CLSTN3-210ENST00000540931 KLHL25Q9H0H3 589 aa16.76■□□□□ 0.27
CLSTN3-210ENST00000540931 FAM60AQ9NP50 221 aa16.76■□□□□ 0.27
CLSTN3-210ENST00000540931 CUEDC1Q9NWM3 386 aaPredicted RBP16.76■□□□□ 0.27
CLSTN3-210ENST00000540931 PSD3Q9NYI0 1048 aa16.76■□□□□ 0.27
CLSTN3-210ENST00000540931 CDC14AQ9UNH5 594 aa16.76■□□□□ 0.27
CLSTN3-210ENST00000540931 PCDHGA4Q9Y5G9 962 aa16.76■□□□□ 0.27
CLSTN3-210ENST00000540931 FREM2Q5SZK8 3169 aa16.76■□□□□ 0.27
CLSTN3-210ENST00000540931 A0A088AWK7 358 aa16.75■□□□□ 0.27
CLSTN3-210ENST00000540931 H0YIV9 168 aa16.75■□□□□ 0.27
CLSTN3-210ENST00000540931 STMND1H3BQB6 276 aa16.75■□□□□ 0.27
CLSTN3-210ENST00000540931 HAT1O14929 419 aa16.75■□□□□ 0.27
CLSTN3-210ENST00000540931 OR1F1O43749 312 aa16.75■□□□□ 0.27
CLSTN3-210ENST00000540931 CTSVO60911 334 aa16.75■□□□□ 0.27
CLSTN3-210ENST00000540931 SCRG1O75711 98 aa16.75■□□□□ 0.27
CLSTN3-210ENST00000540931 SIX3O95343 332 aaPredicted RBP16.75■□□□□ 0.27
CLSTN3-210ENST00000540931 ENO1P06733 434 aaKnown RBP16.75■□□□□ 0.27
CLSTN3-210ENST00000540931 CCNYL3P0C7X3 344 aa16.75■□□□□ 0.27
CLSTN3-210ENST00000540931 ZNF10P21506 573 aaPredicted RBP16.75■□□□□ 0.27
CLSTN3-210ENST00000540931 ARL1P40616 181 aaPredicted RBP16.75■□□□□ 0.27
CLSTN3-210ENST00000540931 SCTRP47872 440 aa16.75■□□□□ 0.27
CLSTN3-210ENST00000540931 ARFIP1P53367 373 aa16.75■□□□□ 0.27
CLSTN3-210ENST00000540931 CLDN6P56747 220 aa16.75■□□□□ 0.27
CLSTN3-210ENST00000540931 SH3BP2P78314 561 aa16.75■□□□□ 0.27
CLSTN3-210ENST00000540931 TGM3Q08188 693 aa16.75■□□□□ 0.27
CLSTN3-210ENST00000540931 DOC2AQ14183 400 aa16.75■□□□□ 0.27
CLSTN3-210ENST00000540931 GPR19Q15760 415 aa16.75■□□□□ 0.27
CLSTN3-210ENST00000540931 MILR1Q7Z6M3 343 aa16.75■□□□□ 0.27
CLSTN3-210ENST00000540931 PROSER1Q86XN7 944 aa16.75■□□□□ 0.27
CLSTN3-210ENST00000540931 NUDCD3Q8IVD9 361 aa16.75■□□□□ 0.27
CLSTN3-210ENST00000540931 PPP1R14CQ8TAE6 165 aa16.75■□□□□ 0.27
CLSTN3-210ENST00000540931 RAB3IL1Q8TBN0 382 aa16.75■□□□□ 0.27
CLSTN3-210ENST00000540931 SLC13A3Q8WWT9 602 aa16.75■□□□□ 0.27
CLSTN3-210ENST00000540931 ESAMQ96AP7 390 aa16.75■□□□□ 0.27
CLSTN3-210ENST00000540931 PRR11Q96HE9 360 aaPredicted RBP16.75■□□□□ 0.27
CLSTN3-210ENST00000540931 ZNF382Q96SR6 550 aa16.75■□□□□ 0.27
CLSTN3-210ENST00000540931 EFHD1Q9BUP0 239 aa16.75■□□□□ 0.27
CLSTN3-210ENST00000540931 NOL11Q9H8H0 719 aaKnown RBP16.75■□□□□ 0.27
CLSTN3-210ENST00000540931 CLK4Q9HAZ1 481 aaKnown RBP16.75■□□□□ 0.27
CLSTN3-210ENST00000540931 PFDN4Q9NQP4 134 aa16.75■□□□□ 0.27
CLSTN3-210ENST00000540931 TXLNGQ9NUQ3 528 aa16.75■□□□□ 0.27
CLSTN3-210ENST00000540931 GEMIN8Q9NWZ8 242 aaKnown RBP16.75■□□□□ 0.27
CLSTN3-210ENST00000540931 PPT2Q9UMR5 302 aa16.75■□□□□ 0.27
CLSTN3-210ENST00000540931 SNX6Q9UNH7 406 aa16.75■□□□□ 0.27
CLSTN3-210ENST00000540931 TMEM184BQ9Y519 407 aaPredicted RBP16.75■□□□□ 0.27
CLSTN3-210ENST00000540931 TMEM120BA0PK00 339 aa16.74■□□□□ 0.27
CLSTN3-210ENST00000540931 FOXO6A8MYZ6 492 aa16.74■□□□□ 0.27
CLSTN3-210ENST00000540931 NPHS1O60500 1241 aa16.74■□□□□ 0.27
CLSTN3-210ENST00000540931 CLEC3AO75596 197 aa16.74■□□□□ 0.27
CLSTN3-210ENST00000540931 BPGMP07738 259 aa16.74■□□□□ 0.27
CLSTN3-210ENST00000540931 SERPINA6P08185 405 aa16.74■□□□□ 0.27
CLSTN3-210ENST00000540931 NEFHP12036 1026 aa16.74■□□□□ 0.27
CLSTN3-210ENST00000540931 ITIH1P19827 911 aa16.74■□□□□ 0.27
CLSTN3-210ENST00000540931 AGXTP21549 392 aa16.74■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms