RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 DDX39BQ13838 428 aaKnown RBP13.28□□□□□ -0.28
RTN3-210ENST00000540798 SF1Q15637 639 aaKnown RBP13.28□□□□□ -0.28
RTN3-210ENST00000540798 CPZQ66K79 652 aa13.28□□□□□ -0.28
RTN3-210ENST00000540798 SYTL1Q8IYJ3 562 aa13.28□□□□□ -0.28
RTN3-210ENST00000540798 EID3Q8N140 333 aa13.28□□□□□ -0.28
RTN3-210ENST00000540798 TBC1D20Q96BZ9 403 aa13.28□□□□□ -0.28
RTN3-210ENST00000540798 CXorf40BQ96DE9 158 aa13.28□□□□□ -0.28
RTN3-210ENST00000540798 FBXL20Q96IG2 436 aa13.28□□□□□ -0.28
RTN3-210ENST00000540798 CHST8Q9H2A9 424 aa13.28□□□□□ -0.28
RTN3-210ENST00000540798 CAAP1Q9H8G2 361 aa13.28□□□□□ -0.28
RTN3-210ENST00000540798 CERS4Q9HA82 394 aa13.28□□□□□ -0.28
RTN3-210ENST00000540798 EXO1Q9UQ84 846 aaKnown RBP13.28□□□□□ -0.28
RTN3-210ENST00000540798 C1orf226A1L170 272 aa13.27□□□□□ -0.28
RTN3-210ENST00000540798 GABRR3A8MPY1 467 aa13.27□□□□□ -0.28
RTN3-210ENST00000540798 SERPINA1P01009 418 aa13.27□□□□□ -0.28
RTN3-210ENST00000540798 SEMG1P04279 462 aa13.27□□□□□ -0.28
RTN3-210ENST00000540798 MYCLP1P12525 358 aaPredicted RBP13.27□□□□□ -0.28
RTN3-210ENST00000540798 ZNF24P17028 368 aa13.27□□□□□ -0.28
RTN3-210ENST00000540798 NELFEP18615 380 aaKnown RBP13.27□□□□□ -0.28
RTN3-210ENST00000540798 IDSP22304 550 aa13.27□□□□□ -0.28
RTN3-210ENST00000540798 AGBL4Q5VU57 503 aa13.27□□□□□ -0.28
RTN3-210ENST00000540798 FAM46CQ5VWP2 391 aa13.27□□□□□ -0.28
RTN3-210ENST00000540798 NXPE4Q6UWF7 544 aa13.27□□□□□ -0.28
RTN3-210ENST00000540798 ZZZ3Q8IYH5 903 aa13.27□□□□□ -0.28
RTN3-210ENST00000540798 CHPFQ8IZ52 775 aa13.27□□□□□ -0.28
RTN3-210ENST00000540798 SVOPLQ8N434 492 aa13.27□□□□□ -0.28
RTN3-210ENST00000540798 ZFP28Q8NHY6 868 aa13.27□□□□□ -0.28
RTN3-210ENST00000540798 PANX1Q96RD7 426 aa13.27□□□□□ -0.28
RTN3-210ENST00000540798 RSPH9Q9H1X1 276 aaPredicted RBP13.27□□□□□ -0.28
RTN3-210ENST00000540798 DMRT3Q9NQL9 472 aa13.27□□□□□ -0.28
RTN3-210ENST00000540798 ATP6V1HQ9UI12 483 aa13.27□□□□□ -0.28
RTN3-210ENST00000540798 DYRK1BQ9Y463 629 aa13.27□□□□□ -0.28
RTN3-210ENST00000540798 PIPSLA2A3N6 862 aa13.27□□□□□ -0.29
RTN3-210ENST00000540798 CLIC1O00299 241 aa13.27□□□□□ -0.29
RTN3-210ENST00000540798 CCNDBP1O95273 360 aa13.27□□□□□ -0.29
RTN3-210ENST00000540798 KCNK5O95279 499 aa13.27□□□□□ -0.29
RTN3-210ENST00000540798 ANXA4P09525 319 aaPredicted RBP13.27□□□□□ -0.29
RTN3-210ENST00000540798 PCNAP12004 261 aa13.27□□□□□ -0.29
RTN3-210ENST00000540798 CRTC3Q6UUV7 619 aa13.27□□□□□ -0.29
RTN3-210ENST00000540798 RBM44Q6ZP01 1051 aaKnown RBP13.27□□□□□ -0.29
RTN3-210ENST00000540798 TRMT11Q7Z4G4 463 aaKnown RBP13.27□□□□□ -0.29
RTN3-210ENST00000540798 PTOV1Q86YD1 416 aa13.27□□□□□ -0.29
RTN3-210ENST00000540798 PJA1Q8NG27 643 aa13.27□□□□□ -0.29
RTN3-210ENST00000540798 SLC5A11Q8WWX8 675 aa13.27□□□□□ -0.29
RTN3-210ENST00000540798 PYURFQ96I23 114 aa13.27□□□□□ -0.29
RTN3-210ENST00000540798 DUSP26Q9BV47 211 aa13.27□□□□□ -0.29
RTN3-210ENST00000540798 SPATA9Q9BWV2 254 aa13.27□□□□□ -0.29
RTN3-210ENST00000540798 PCDHB11Q9Y5F2 797 aa13.27□□□□□ -0.29
RTN3-210ENST00000540798 DNMT3AQ9Y6K1 912 aaPredicted RBP13.27□□□□□ -0.29
RTN3-210ENST00000540798 KLHL18O94889 574 aa13.26□□□□□ -0.29
RTN3-210ENST00000540798 ENGP17813 658 aa13.26□□□□□ -0.29
RTN3-210ENST00000540798 TEAD1P28347 426 aa13.26□□□□□ -0.29
RTN3-210ENST00000540798 PBX2P40425 430 aa13.26□□□□□ -0.29
RTN3-210ENST00000540798 PPP2R2BQ00005 443 aa13.26□□□□□ -0.29
RTN3-210ENST00000540798 LAPTM5Q13571 262 aa13.26□□□□□ -0.29
RTN3-210ENST00000540798 SLBPQ14493 270 aaKnown RBP eCLIP13.26□□□□□ -0.29
RTN3-210ENST00000540798 PAGE2BQ5JRK9 111 aa13.26□□□□□ -0.29
RTN3-210ENST00000540798 LCTLQ6UWM7 567 aa13.26□□□□□ -0.29
RTN3-210ENST00000540798 ZCCHC7Q8N3Z6 543 aaKnown RBP13.26□□□□□ -0.29
RTN3-210ENST00000540798 DMTF1Q9Y222 760 aa13.26□□□□□ -0.29
RTN3-210ENST00000540798 REV3LO60673 3130 aa13.26□□□□□ -0.29
RTN3-210ENST00000540798 C5orf42Q9H799 3197 aa13.26□□□□□ -0.29
RTN3-210ENST00000540798 EVPLLA8MZ36 301 aa13.26□□□□□ -0.29
RTN3-210ENST00000540798 CST1P01037 141 aa13.26□□□□□ -0.29
RTN3-210ENST00000540798 ABCB1P08183 1280 aaPredicted RBP13.26□□□□□ -0.29
RTN3-210ENST00000540798 PIK3CBP42338 1070 aa13.26□□□□□ -0.29
RTN3-210ENST00000540798 CDK3Q00526 305 aa13.26□□□□□ -0.29
RTN3-210ENST00000540798 C2orf27AQ580R0 203 aa13.26□□□□□ -0.29
RTN3-210ENST00000540798 ERICH5Q6P6B1 374 aa13.26□□□□□ -0.29
RTN3-210ENST00000540798 ALDH16A1Q8IZ83 802 aa13.26□□□□□ -0.29
RTN3-210ENST00000540798 CLECL1Q8IZS7 167 aa13.26□□□□□ -0.29
RTN3-210ENST00000540798 CYGBQ8WWM9 190 aa13.26□□□□□ -0.29
RTN3-210ENST00000540798 OSBPL10Q9BXB5 764 aa13.26□□□□□ -0.29
RTN3-210ENST00000540798 YTHDF1Q9BYJ9 559 aaKnown RBP13.26□□□□□ -0.29
RTN3-210ENST00000540798 CCDC177Q9NQR7 707 aaPredicted RBP13.26□□□□□ -0.29
RTN3-210ENST00000540798 TMEM98Q9Y2Y6 226 aa13.26□□□□□ -0.29
RTN3-210ENST00000540798 EPN2O95208 641 aa13.26□□□□□ -0.29
RTN3-210ENST00000540798 LRRC74AQ0VAA2 488 aa13.26□□□□□ -0.29
RTN3-210ENST00000540798 CAMK2GQ13555 558 aaPredicted RBP13.26□□□□□ -0.29
RTN3-210ENST00000540798 PDE7AQ13946 482 aa13.26□□□□□ -0.29
RTN3-210ENST00000540798 SHHQ15465 462 aa13.26□□□□□ -0.29
RTN3-210ENST00000540798 VMACQ2NL98 169 aa13.26□□□□□ -0.29
RTN3-210ENST00000540798 WSCD2Q2TBF2 565 aa13.26□□□□□ -0.29
RTN3-210ENST00000540798 CES5AQ6NT32 575 aa13.26□□□□□ -0.29
RTN3-210ENST00000540798 SYCE2Q6PIF2 218 aa13.26□□□□□ -0.29
RTN3-210ENST00000540798 ABRAXAS1Q6UWZ7 409 aa13.26□□□□□ -0.29
RTN3-210ENST00000540798 HEATR4Q86WZ0 1026 aa13.26□□□□□ -0.29
RTN3-210ENST00000540798 SYNPOQ8N3V7 929 aa13.26□□□□□ -0.29
RTN3-210ENST00000540798 GOT1L1Q8NHS2 421 aaPredicted RBP13.26□□□□□ -0.29
RTN3-210ENST00000540798 NCLNQ969V3 563 aa13.26□□□□□ -0.29
RTN3-210ENST00000540798 TEX101Q9BY14 249 aa13.26□□□□□ -0.29
RTN3-210ENST00000540798 SPNS1Q9H2V7 528 aa13.26□□□□□ -0.29
RTN3-210ENST00000540798 ZDHHC4Q9NPG8 344 aa13.26□□□□□ -0.29
RTN3-210ENST00000540798 AASDHPPTQ9NRN7 309 aa13.26□□□□□ -0.29
RTN3-210ENST00000540798 SLC23A2Q9UGH3 650 aa13.26□□□□□ -0.29
RTN3-210ENST00000540798 STON1Q9Y6Q2 735 aa13.26□□□□□ -0.29
RTN3-210ENST00000540798 EPOPA6NHQ4 379 aa13.25□□□□□ -0.29
RTN3-210ENST00000540798 G3V2T6 193 aa13.25□□□□□ -0.29
RTN3-210ENST00000540798 RNASET2O00584 256 aaKnown RBP13.25□□□□□ -0.29
RTN3-210ENST00000540798 PI15O43692 258 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms