RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 ASGR2P07307 311 aa13.67□□□□□ -0.22
USP3-204ENST00000540797 MTHFD1P11586 935 aaKnown RBP13.67□□□□□ -0.22
USP3-204ENST00000540797 CEACAM20Q6UY09 585 aa13.67□□□□□ -0.22
USP3-204ENST00000540797 FRMD7Q6ZUT3 714 aa13.67□□□□□ -0.22
USP3-204ENST00000540797 ZNF433Q8N7K0 673 aaPredicted RBP13.67□□□□□ -0.22
USP3-204ENST00000540797 TMEM125Q96AQ2 219 aa13.67□□□□□ -0.22
USP3-204ENST00000540797 SPATA9Q9BWV2 254 aa13.67□□□□□ -0.22
USP3-204ENST00000540797 POLR2J3Q9H1A7 115 aaKnown RBP13.67□□□□□ -0.22
USP3-204ENST00000540797 TVP23BQ9NYZ1 205 aa13.67□□□□□ -0.22
USP3-204ENST00000540797 OARD1Q9Y530 152 aa13.67□□□□□ -0.22
USP3-204ENST00000540797 GLOD5A6NK44 160 aa13.67□□□□□ -0.22
USP3-204ENST00000540797 H7C0S8 307 aa13.67□□□□□ -0.22
USP3-204ENST00000540797 MUSKO15146 869 aa13.67□□□□□ -0.22
USP3-204ENST00000540797 SHOX2O60902 331 aaPredicted RBP13.67□□□□□ -0.22
USP3-204ENST00000540797 KHDRBS3O75525 346 aaKnown RBP13.67□□□□□ -0.22
USP3-204ENST00000540797 TRAPPC6AO75865 159 aa13.67□□□□□ -0.22
USP3-204ENST00000540797 RABIFP47224 123 aa13.67□□□□□ -0.22
USP3-204ENST00000540797 ZNF267Q14586 743 aaPredicted RBP13.67□□□□□ -0.22
USP3-204ENST00000540797 EMC10Q5UCC4 262 aa13.67□□□□□ -0.22
USP3-204ENST00000540797 LIPJQ5W064 366 aa13.67□□□□□ -0.22
USP3-204ENST00000540797 CXorf57Q6NSI4 855 aaKnown RBP13.67□□□□□ -0.22
USP3-204ENST00000540797 PIGWQ7Z7B1 504 aa13.67□□□□□ -0.22
USP3-204ENST00000540797 TSPAN33Q86UF1 283 aa13.67□□□□□ -0.22
USP3-204ENST00000540797 AMIGO1Q86WK6 493 aa13.67□□□□□ -0.22
USP3-204ENST00000540797 TP53INP2Q8IXH6 220 aa13.67□□□□□ -0.22
USP3-204ENST00000540797 KLF16Q9BXK1 252 aaPredicted RBP13.67□□□□□ -0.22
USP3-204ENST00000540797 R3HDMLQ9H3Y0 253 aa13.67□□□□□ -0.22
USP3-204ENST00000540797 ZNF395Q9H8N7 513 aaPredicted RBP13.67□□□□□ -0.22
USP3-204ENST00000540797 POMPQ9Y244 141 aa13.67□□□□□ -0.22
USP3-204ENST00000540797 HCFC2Q9Y5Z7 792 aa13.67□□□□□ -0.22
USP3-204ENST00000540797 OAS3Q9Y6K5 1087 aaKnown RBP13.67□□□□□ -0.22
USP3-204ENST00000540797 ZBTB42B2RXF5 422 aa13.67□□□□□ -0.22
USP3-204ENST00000540797 OPN1SWP03999 348 aa13.67□□□□□ -0.22
USP3-204ENST00000540797 BPIP17213 487 aa13.67□□□□□ -0.22
USP3-204ENST00000540797 GSCP56915 257 aaPredicted RBP13.67□□□□□ -0.22
USP3-204ENST00000540797 EMX2Q04743 252 aa13.67□□□□□ -0.22
USP3-204ENST00000540797 ZNF763Q0D2J5 394 aa13.67□□□□□ -0.22
USP3-204ENST00000540797 RBCK1Q9BYM8 510 aa13.67□□□□□ -0.22
USP3-204ENST00000540797 MTG2Q9H4K7 406 aa13.67□□□□□ -0.22
USP3-204ENST00000540797 PRTFDC1Q9NRG1 225 aa13.67□□□□□ -0.22
USP3-204ENST00000540797 ACADLP28330 430 aa13.66□□□□□ -0.22
USP3-204ENST00000540797 DNAJB13P59910 316 aa13.66□□□□□ -0.22
USP3-204ENST00000540797 CDK6Q00534 326 aa13.66□□□□□ -0.22
USP3-204ENST00000540797 PCLAFQ15004 111 aa13.66□□□□□ -0.22
USP3-204ENST00000540797 HDDC2Q7Z4H3 204 aa13.66□□□□□ -0.22
USP3-204ENST00000540797 NPAS3Q8IXF0 933 aa13.66□□□□□ -0.22
USP3-204ENST00000540797 PLD6Q8N2A8 252 aaKnown RBP13.66□□□□□ -0.22
USP3-204ENST00000540797 KLHL6Q8WZ60 621 aa13.66□□□□□ -0.22
USP3-204ENST00000540797 SCRN2Q96FV2 425 aa13.66□□□□□ -0.22
USP3-204ENST00000540797 SLC46A2Q9BY10 475 aa13.66□□□□□ -0.22
USP3-204ENST00000540797 DENND2DQ9H6A0 471 aaPredicted RBP13.66□□□□□ -0.22
USP3-204ENST00000540797 GLI3P10071 1580 aa13.66□□□□□ -0.22
USP3-204ENST00000540797 CD1DP15813 335 aa13.66□□□□□ -0.22
USP3-204ENST00000540797 CDKN1CP49918 316 aaPredicted RBP13.66□□□□□ -0.22
USP3-204ENST00000540797 ABATP80404 500 aa13.66□□□□□ -0.22
USP3-204ENST00000540797 C6orf52Q5T4I8 152 aa13.66□□□□□ -0.22
USP3-204ENST00000540797 C10orf62Q5T681 223 aaPredicted RBP13.66□□□□□ -0.22
USP3-204ENST00000540797 CRTC1Q6UUV9 634 aa13.66□□□□□ -0.22
USP3-204ENST00000540797 AHSA2Q719I0 299 aa13.66□□□□□ -0.22
USP3-204ENST00000540797 OR4K14Q8NGD5 310 aa13.66□□□□□ -0.22
USP3-204ENST00000540797 IL17FQ96PD4 163 aa13.66□□□□□ -0.22
USP3-204ENST00000540797 TRIB3Q96RU7 358 aa13.66□□□□□ -0.22
USP3-204ENST00000540797 MS4A12Q9NXJ0 267 aa13.66□□□□□ -0.22
USP3-204ENST00000540797 H0YGN5 161 aa13.66□□□□□ -0.22
USP3-204ENST00000540797 KLF11O14901 512 aa13.66□□□□□ -0.22
USP3-204ENST00000540797 LDOC1O95751 146 aaPredicted RBP13.66□□□□□ -0.22
USP3-204ENST00000540797 PGRP06401 933 aa13.66□□□□□ -0.22
USP3-204ENST00000540797 USP53Q70EK8 1073 aa13.66□□□□□ -0.22
USP3-204ENST00000540797 IL22RA1Q8N6P7 574 aa13.66□□□□□ -0.22
USP3-204ENST00000540797 OR5K1Q8NHB7 308 aa13.66□□□□□ -0.22
USP3-204ENST00000540797 ZNF689Q96CS4 500 aaPredicted RBP13.66□□□□□ -0.22
USP3-204ENST00000540797 TCEAL4Q96EI5 215 aa13.66□□□□□ -0.22
USP3-204ENST00000540797 FARSBQ9NSD9 589 aaKnown RBP13.66□□□□□ -0.22
USP3-204ENST00000540797 MARCH4Q9P2E8 410 aaPredicted RBP13.66□□□□□ -0.22
USP3-204ENST00000540797 C6orf47O95873 294 aa13.66□□□□□ -0.22
USP3-204ENST00000540797 GJA8P48165 433 aa13.66□□□□□ -0.22
USP3-204ENST00000540797 GSTM4Q03013 218 aa13.66□□□□□ -0.22
USP3-204ENST00000540797 SNTA1Q13424 505 aa13.66□□□□□ -0.22
USP3-204ENST00000540797 NFKBIDQ8NI38 313 aa13.66□□□□□ -0.22
USP3-204ENST00000540797 PHOSPHO1Q8TCT1 267 aa13.66□□□□□ -0.22
USP3-204ENST00000540797 PCDHAC1Q9H158 963 aa13.66□□□□□ -0.22
USP3-204ENST00000540797 FTSJ1Q9UET6 329 aa13.66□□□□□ -0.22
USP3-204ENST00000540797 BTBD3Q9Y2F9 522 aa13.66□□□□□ -0.22
USP3-204ENST00000540797 IQCMA0A1B0GVH7 501 aa13.65□□□□□ -0.22
USP3-204ENST00000540797 BHMG1C9JSJ3 638 aaPredicted RBP13.65□□□□□ -0.22
USP3-204ENST00000540797 FHP07954 510 aa13.65□□□□□ -0.22
USP3-204ENST00000540797 S100GP29377 79 aa13.65□□□□□ -0.22
USP3-204ENST00000540797 TRAP1Q12931 704 aaKnown RBP13.65□□□□□ -0.22
USP3-204ENST00000540797 RIPK1Q13546 671 aa13.65□□□□□ -0.22
USP3-204ENST00000540797 ZNF234Q14588 700 aa13.65□□□□□ -0.22
USP3-204ENST00000540797 ZNF382Q96SR6 550 aa13.65□□□□□ -0.22
USP3-204ENST00000540797 EPYCQ99645 322 aa13.65□□□□□ -0.22
USP3-204ENST00000540797 LDAHQ9H6V9 325 aa13.65□□□□□ -0.22
USP3-204ENST00000540797 PRSS51A0A1B0GVH4 220 aa13.65□□□□□ -0.22
USP3-204ENST00000540797 WBP4O75554 376 aaKnown RBP13.65□□□□□ -0.22
USP3-204ENST00000540797 HNRNPA2B1P22626 353 aaKnown RBP13.65□□□□□ -0.22
USP3-204ENST00000540797 ACVR2AP27037 513 aa13.65□□□□□ -0.22
USP3-204ENST00000540797 GNALP38405 381 aa13.65□□□□□ -0.22
USP3-204ENST00000540797 SLC44A4Q53GD3 710 aa13.65□□□□□ -0.22
USP3-204ENST00000540797 SPANXN4Q5MJ08 99 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 215.5 ms