RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 SMSP52788 366 aa8.52□□□□□ -1.05
YBX3-208ENST00000540447 VLDLRP98155 873 aa8.52□□□□□ -1.05
YBX3-208ENST00000540447 PDIA6Q15084 440 aa8.52□□□□□ -1.05
YBX3-208ENST00000540447 IL17AQ16552 155 aa8.52□□□□□ -1.05
YBX3-208ENST00000540447 DCAF12L1Q5VU92 463 aa8.52□□□□□ -1.05
YBX3-208ENST00000540447 STEAP3Q658P3 488 aa8.52□□□□□ -1.05
YBX3-208ENST00000540447 DCBLD1Q8N8Z6 715 aa8.52□□□□□ -1.05
YBX3-208ENST00000540447 OR1M1Q8NGA1 313 aa8.52□□□□□ -1.05
YBX3-208ENST00000540447 OR9I1Q8NGQ6 314 aa8.52□□□□□ -1.05
YBX3-208ENST00000540447 DENND1AQ8TEH3 1009 aa8.52□□□□□ -1.05
YBX3-208ENST00000540447 OR8D1Q8WZ84 308 aa8.52□□□□□ -1.05
YBX3-208ENST00000540447 COL26A1Q96A83 441 aa8.52□□□□□ -1.05
YBX3-208ENST00000540447 SULT4A1Q9BR01 284 aa8.52□□□□□ -1.05
YBX3-208ENST00000540447 NAA50Q9GZZ1 169 aaKnown RBP8.52□□□□□ -1.05
YBX3-208ENST00000540447 OR51E2Q9H255 320 aa8.52□□□□□ -1.05
YBX3-208ENST00000540447 LRFN1Q9P244 771 aa8.52□□□□□ -1.05
YBX3-208ENST00000540447 DNMT3LQ9UJW3 386 aa8.52□□□□□ -1.05
YBX3-208ENST00000540447 ZNF175Q9Y473 711 aa8.52□□□□□ -1.05
YBX3-208ENST00000540447 TGOLN2O43493 480 aa8.52□□□□□ -1.05
YBX3-208ENST00000540447 KERAO60938 352 aa8.52□□□□□ -1.05
YBX3-208ENST00000540447 HTR3BO95264 441 aa8.52□□□□□ -1.05
YBX3-208ENST00000540447 UGT2B7P16662 529 aa8.52□□□□□ -1.05
YBX3-208ENST00000540447 PROZP22891 400 aa8.52□□□□□ -1.05
YBX3-208ENST00000540447 DLSTP36957 453 aa8.52□□□□□ -1.05
YBX3-208ENST00000540447 CRKLP46109 303 aaKnown RBP8.52□□□□□ -1.05
YBX3-208ENST00000540447 CDH8P55286 799 aa8.52□□□□□ -1.05
YBX3-208ENST00000540447 VSX2P58304 361 aaPredicted RBP8.52□□□□□ -1.05
YBX3-208ENST00000540447 MLLT1Q03111 559 aaPredicted RBP8.52□□□□□ -1.05
YBX3-208ENST00000540447 ADGRF2Q8IZF7 708 aa8.52□□□□□ -1.05
YBX3-208ENST00000540447 SGK3Q96BR1 496 aa8.52□□□□□ -1.05
YBX3-208ENST00000540447 DNAJC19Q96DA6 116 aa8.52□□□□□ -1.05
YBX3-208ENST00000540447 TSSK6Q9BXA6 273 aa8.52□□□□□ -1.05
YBX3-208ENST00000540447 GPRC5BQ9NZH0 403 aa8.52□□□□□ -1.05
YBX3-208ENST00000540447 PCDHGB7Q9Y5F8 929 aa8.52□□□□□ -1.05
YBX3-208ENST00000540447 TMEM233B4DJY2 109 aa8.52□□□□□ -1.05
YBX3-208ENST00000540447 TLR5O60602 858 aa8.52□□□□□ -1.05
YBX3-208ENST00000540447 MAFKO60675 156 aa8.52□□□□□ -1.05
YBX3-208ENST00000540447 SDC3O75056 442 aa8.52□□□□□ -1.05
YBX3-208ENST00000540447 ALDH1A1P00352 501 aa8.52□□□□□ -1.05
YBX3-208ENST00000540447 CATP04040 527 aaKnown RBP8.52□□□□□ -1.05
YBX3-208ENST00000540447 PRPS2P11908 318 aa8.52□□□□□ -1.05
YBX3-208ENST00000540447 TPT1P13693 172 aaKnown RBP8.52□□□□□ -1.05
YBX3-208ENST00000540447 PPP3CBP16298 524 aa8.52□□□□□ -1.05
YBX3-208ENST00000540447 RPL9P32969 192 aaKnown RBP8.52□□□□□ -1.05
YBX3-208ENST00000540447 SLC1A2P43004 574 aa8.52□□□□□ -1.05
YBX3-208ENST00000540447 GRM2Q14416 872 aa8.52□□□□□ -1.05
YBX3-208ENST00000540447 ATAT1Q5SQI0 421 aa8.52□□□□□ -1.05
YBX3-208ENST00000540447 C17orf107Q6ZR85 190 aa8.52□□□□□ -1.05
YBX3-208ENST00000540447 AQP11Q8NBQ7 271 aa8.52□□□□□ -1.05
YBX3-208ENST00000540447 OR4L1Q8NH43 312 aa8.52□□□□□ -1.05
YBX3-208ENST00000540447 XAGE5Q8WWM1 108 aa8.52□□□□□ -1.05
YBX3-208ENST00000540447 KCNJ9Q92806 393 aa8.52□□□□□ -1.05
YBX3-208ENST00000540447 EMID1Q96A84 441 aaPredicted RBP8.52□□□□□ -1.05
YBX3-208ENST00000540447 SORBS1Q9BX66 1292 aaKnown RBP8.52□□□□□ -1.05
YBX3-208ENST00000540447 BTBD1Q9H0C5 482 aa8.52□□□□□ -1.05
YBX3-208ENST00000540447 DBNDD1Q9H9R9 158 aa8.52□□□□□ -1.05
YBX3-208ENST00000540447 DNMT3AQ9Y6K1 912 aaPredicted RBP8.52□□□□□ -1.05
YBX3-208ENST00000540447 A0A1W2PP18 115 aa8.52□□□□□ -1.05
YBX3-208ENST00000540447 CPED1A4D0V7 1026 aa8.52□□□□□ -1.05
YBX3-208ENST00000540447 HOXC11O43248 304 aaPredicted RBP8.52□□□□□ -1.05
YBX3-208ENST00000540447 GSRP00390 522 aa8.52□□□□□ -1.05
YBX3-208ENST00000540447 HSD3B2P26439 372 aa8.52□□□□□ -1.05
YBX3-208ENST00000540447 CCND3P30281 292 aaPredicted RBP8.52□□□□□ -1.05
YBX3-208ENST00000540447 AQP2P41181 271 aa8.52□□□□□ -1.05
YBX3-208ENST00000540447 CHIT1Q13231 466 aa8.52□□□□□ -1.05
YBX3-208ENST00000540447 ARFRP1Q13795 201 aa8.52□□□□□ -1.05
YBX3-208ENST00000540447 GK3PQ14409 553 aa8.52□□□□□ -1.05
YBX3-208ENST00000540447 SPHARQ15513 63 aa8.52□□□□□ -1.05
YBX3-208ENST00000540447 FAM111BQ6SJ93 734 aa8.52□□□□□ -1.05
YBX3-208ENST00000540447 GSG1LQ6UXU4 331 aa8.52□□□□□ -1.05
YBX3-208ENST00000540447 CHRDL2Q6WN34 429 aa8.52□□□□□ -1.05
YBX3-208ENST00000540447 ZC3HAV1Q7Z2W4 902 aaKnown RBP8.52□□□□□ -1.05
YBX3-208ENST00000540447 RETREG3Q86VR2 466 aa8.52□□□□□ -1.05
YBX3-208ENST00000540447 LGI2Q8N0V4 545 aa8.52□□□□□ -1.05
YBX3-208ENST00000540447 OR52H1Q8NGJ2 320 aa8.52□□□□□ -1.05
YBX3-208ENST00000540447 SLC22A17Q8WUG5 538 aa8.52□□□□□ -1.05
YBX3-208ENST00000540447 ZNF419Q96HQ0 510 aaPredicted RBP8.52□□□□□ -1.05
YBX3-208ENST00000540447 ZNF597Q96LX8 424 aa8.52□□□□□ -1.05
YBX3-208ENST00000540447 PINK1Q9BXM7 581 aa8.52□□□□□ -1.05
YBX3-208ENST00000540447 ZIM2Q9NZV7 527 aa8.52□□□□□ -1.05
YBX3-208ENST00000540447 SIRPGQ9P1W8 387 aa8.52□□□□□ -1.05
YBX3-208ENST00000540447 ZNF214Q9UL59 606 aaPredicted RBP8.52□□□□□ -1.05
YBX3-208ENST00000540447 PTPRJQ12913 1337 aa8.51□□□□□ -1.05
YBX3-208ENST00000540447 TEX13DA0A0J9YY54 714 aaPredicted RBP8.51□□□□□ -1.05
YBX3-208ENST00000540447 ELOA3DA6NLF2 546 aaPredicted RBP8.51□□□□□ -1.05
YBX3-208ENST00000540447 J3QLW9 94 aa8.51□□□□□ -1.05
YBX3-208ENST00000540447 LATS1O95835 1130 aa8.51□□□□□ -1.05
YBX3-208ENST00000540447 RHOP08100 348 aa8.51□□□□□ -1.05
YBX3-208ENST00000540447 ADRB1P08588 477 aa8.51□□□□□ -1.05
YBX3-208ENST00000540447 CD63P08962 238 aa8.51□□□□□ -1.05
YBX3-208ENST00000540447 HSD3B1P14060 373 aa8.51□□□□□ -1.05
YBX3-208ENST00000540447 ZNF19P17023 458 aa8.51□□□□□ -1.05
YBX3-208ENST00000540447 PCSK6P29122 969 aa8.51□□□□□ -1.05
YBX3-208ENST00000540447 JAM2P57087 298 aa8.51□□□□□ -1.05
YBX3-208ENST00000540447 OR12D2P58182 307 aa8.51□□□□□ -1.05
YBX3-208ENST00000540447 ACTA2P62736 377 aa8.51□□□□□ -1.05
YBX3-208ENST00000540447 ACTG2P63267 376 aa8.51□□□□□ -1.05
YBX3-208ENST00000540447 ACTC1P68032 377 aa8.51□□□□□ -1.05
YBX3-208ENST00000540447 ACTA1P68133 377 aa8.51□□□□□ -1.05
YBX3-208ENST00000540447 CHRNA6Q15825 494 aa8.51□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms