RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 UMODP07911 640 aa12.35□□□□□ -0.43
VPS28-216ENST00000533806 INHBAP08476 426 aa12.35□□□□□ -0.43
VPS28-216ENST00000533806 CD63P08962 238 aa12.35□□□□□ -0.43
VPS28-216ENST00000533806 NCF1P14598 390 aaPredicted RBP12.35□□□□□ -0.43
VPS28-216ENST00000533806 EPORP19235 508 aa12.35□□□□□ -0.43
VPS28-216ENST00000533806 MSH2P43246 934 aa12.35□□□□□ -0.43
VPS28-216ENST00000533806 OR1D4P47884 311 aa12.35□□□□□ -0.43
VPS28-216ENST00000533806 FOXL2P58012 376 aa12.35□□□□□ -0.43
VPS28-216ENST00000533806 REEP5Q00765 189 aa12.35□□□□□ -0.43
VPS28-216ENST00000533806 PCDH1Q08174 1060 aa12.35□□□□□ -0.43
VPS28-216ENST00000533806 FAM53BQ14153 422 aa12.35□□□□□ -0.43
VPS28-216ENST00000533806 SLC9A5Q14940 896 aa12.35□□□□□ -0.43
VPS28-216ENST00000533806 ACAP2Q15057 778 aa12.35□□□□□ -0.43
VPS28-216ENST00000533806 NKG7Q16617 165 aa12.35□□□□□ -0.43
VPS28-216ENST00000533806 FAM83EQ2M2I3 478 aa12.35□□□□□ -0.43
VPS28-216ENST00000533806 DEFB109BQ30KR1 87 aa12.35□□□□□ -0.43
VPS28-216ENST00000533806 MLIPQ5VWP3 458 aa12.35□□□□□ -0.43
VPS28-216ENST00000533806 TMEM214Q6NUQ4 689 aaKnown RBP12.35□□□□□ -0.43
VPS28-216ENST00000533806 NXPE4Q6UWF7 544 aa12.35□□□□□ -0.43
VPS28-216ENST00000533806 TIFABQ6ZNK6 161 aa12.35□□□□□ -0.43
VPS28-216ENST00000533806 APLFQ8IW19 511 aaPredicted RBP12.35□□□□□ -0.43
VPS28-216ENST00000533806 PLD6Q8N2A8 252 aaKnown RBP12.35□□□□□ -0.43
VPS28-216ENST00000533806 APOBEC4Q8WW27 367 aaKnown RBP12.35□□□□□ -0.43
VPS28-216ENST00000533806 THAP4Q8WY91 577 aa12.35□□□□□ -0.43
VPS28-216ENST00000533806 SLC39A7Q92504 469 aa12.35□□□□□ -0.43
VPS28-216ENST00000533806 RERGQ96A58 199 aaPredicted RBP12.35□□□□□ -0.43
VPS28-216ENST00000533806 WDR34Q96EX3 536 aa12.35□□□□□ -0.43
VPS28-216ENST00000533806 TSNARE1Q96NA8 513 aa12.35□□□□□ -0.43
VPS28-216ENST00000533806 SPSB2Q99619 263 aa12.35□□□□□ -0.43
VPS28-216ENST00000533806 MACROD1Q9BQ69 325 aa12.35□□□□□ -0.43
VPS28-216ENST00000533806 SEMA4CQ9C0C4 833 aa12.35□□□□□ -0.43
VPS28-216ENST00000533806 ZNF304Q9HCX3 659 aa12.35□□□□□ -0.43
VPS28-216ENST00000533806 TLK1Q9UKI8 766 aa12.35□□□□□ -0.43
VPS28-216ENST00000533806 RNF112Q9ULX5 631 aa12.35□□□□□ -0.43
VPS28-216ENST00000533806 POLHQ9Y253 713 aa12.35□□□□□ -0.43
VPS28-216ENST00000533806 ASB1Q9Y576 335 aa12.35□□□□□ -0.43
VPS28-216ENST00000533806 POC1B-GALNT4F8VUJ3 575 aa12.34□□□□□ -0.43
VPS28-216ENST00000533806 MAP2K7O14733 419 aa12.34□□□□□ -0.43
VPS28-216ENST00000533806 RFPL1O75677 317 aa12.34□□□□□ -0.43
VPS28-216ENST00000533806 STK16O75716 305 aa12.34□□□□□ -0.43
VPS28-216ENST00000533806 C1QL1O75973 258 aa12.34□□□□□ -0.43
VPS28-216ENST00000533806 KRT38O76015 456 aa12.34□□□□□ -0.43
VPS28-216ENST00000533806 WDR47O94967 919 aa12.34□□□□□ -0.43
VPS28-216ENST00000533806 FAM87AP0C7U9 286 aa12.34□□□□□ -0.43
VPS28-216ENST00000533806 PIM1P11309 404 aaPredicted RBP12.34□□□□□ -0.43
VPS28-216ENST00000533806 GNAZP19086 355 aa12.34□□□□□ -0.43
VPS28-216ENST00000533806 SCTRP47872 440 aa12.34□□□□□ -0.43
VPS28-216ENST00000533806 MEF2AQ02078 507 aaPredicted RBP12.34□□□□□ -0.43
VPS28-216ENST00000533806 DSG2Q14126 1118 aa12.34□□□□□ -0.43
VPS28-216ENST00000533806 LY6DQ14210 128 aa12.34□□□□□ -0.43
VPS28-216ENST00000533806 SSPNQ14714 243 aa12.34□□□□□ -0.43
VPS28-216ENST00000533806 FBXO48Q5FWF7 155 aa12.34□□□□□ -0.43
VPS28-216ENST00000533806 TMEM151AQ8N4L1 468 aa12.34□□□□□ -0.43
VPS28-216ENST00000533806 AMER3Q8N944 861 aa12.34□□□□□ -0.43
VPS28-216ENST00000533806 ANKRD53Q8N9V6 530 aa12.34□□□□□ -0.43
VPS28-216ENST00000533806 UBTD2Q8WUN7 234 aa12.34□□□□□ -0.43
VPS28-216ENST00000533806 SLC13A3Q8WWT9 602 aa12.34□□□□□ -0.43
VPS28-216ENST00000533806 ESAMQ96AP7 390 aa12.34□□□□□ -0.43
VPS28-216ENST00000533806 NACC2Q96BF6 587 aa12.34□□□□□ -0.43
VPS28-216ENST00000533806 MOCOSQ96EN8 888 aa12.34□□□□□ -0.43
VPS28-216ENST00000533806 CABS1Q96KC9 395 aa12.34□□□□□ -0.43
VPS28-216ENST00000533806 CD244Q9BZW8 370 aa12.34□□□□□ -0.43
VPS28-216ENST00000533806 EHD1Q9H4M9 534 aa12.34□□□□□ -0.43
VPS28-216ENST00000533806 CNOT10Q9H9A5 744 aaKnown RBP12.34□□□□□ -0.43
VPS28-216ENST00000533806 DNAJC11Q9NVH1 559 aa12.34□□□□□ -0.43
VPS28-216ENST00000533806 ZNF358Q9NW07 568 aa12.34□□□□□ -0.43
VPS28-216ENST00000533806 GEMIN8Q9NWZ8 242 aaKnown RBP12.34□□□□□ -0.43
VPS28-216ENST00000533806 GPRC5BQ9NZH0 403 aa12.34□□□□□ -0.43
VPS28-216ENST00000533806 NUDT4Q9NZJ9 180 aa12.34□□□□□ -0.43
VPS28-216ENST00000533806 CD274Q9NZQ7 290 aa12.34□□□□□ -0.43
VPS28-216ENST00000533806 CTSFQ9UBX1 484 aa12.34□□□□□ -0.43
VPS28-216ENST00000533806 NDOR1Q9UHB4 597 aa12.34□□□□□ -0.43
VPS28-216ENST00000533806 ZFP69BQ9UJL9 534 aa12.34□□□□□ -0.43
VPS28-216ENST00000533806 TUBD1Q9UJT1 453 aa12.34□□□□□ -0.43
VPS28-216ENST00000533806 PADI2Q9Y2J8 665 aa12.34□□□□□ -0.43
VPS28-216ENST00000533806 EXOC1LA0A1B0GW35 172 aa12.33□□□□□ -0.44
VPS28-216ENST00000533806 TRIM49D1C9J1S8 452 aa12.33□□□□□ -0.44
VPS28-216ENST00000533806 UBXN8O00124 270 aa12.33□□□□□ -0.44
VPS28-216ENST00000533806 OR1F1O43749 312 aa12.33□□□□□ -0.44
VPS28-216ENST00000533806 STATHP02808 62 aa12.33□□□□□ -0.44
VPS28-216ENST00000533806 SNRPAP09012 282 aaKnown RBP12.33□□□□□ -0.44
VPS28-216ENST00000533806 C1GALT1C1LP0DN25 315 aa12.33□□□□□ -0.44
VPS28-216ENST00000533806 COL6A2P12110 1019 aa12.33□□□□□ -0.44
VPS28-216ENST00000533806 GRK3P35626 688 aa12.33□□□□□ -0.44
VPS28-216ENST00000533806 AHRP35869 848 aa12.33□□□□□ -0.44
VPS28-216ENST00000533806 CASP2P42575 452 aa12.33□□□□□ -0.44
VPS28-216ENST00000533806 CCR10P46092 362 aa12.33□□□□□ -0.44
VPS28-216ENST00000533806 HSPA7P48741 367 aa12.33□□□□□ -0.44
VPS28-216ENST00000533806 POLE2P56282 527 aa12.33□□□□□ -0.44
VPS28-216ENST00000533806 HYAL2Q12891 473 aa12.33□□□□□ -0.44
VPS28-216ENST00000533806 CDC16Q13042 620 aa12.33□□□□□ -0.44
VPS28-216ENST00000533806 PWP1Q13610 501 aa12.33□□□□□ -0.44
VPS28-216ENST00000533806 TAF1BQ53T94 588 aaPredicted RBP12.33□□□□□ -0.44
VPS28-216ENST00000533806 ATG9BQ674R7 924 aa12.33□□□□□ -0.44
VPS28-216ENST00000533806 PRSS41Q7RTY9 318 aa12.33□□□□□ -0.44
VPS28-216ENST00000533806 ASPGQ86U10 573 aa12.33□□□□□ -0.44
VPS28-216ENST00000533806 AFAP1L2Q8N4X5 818 aa12.33□□□□□ -0.44
VPS28-216ENST00000533806 METTL27Q8N6F8 245 aaPredicted RBP12.33□□□□□ -0.44
VPS28-216ENST00000533806 KCT2Q8NC54 265 aa12.33□□□□□ -0.44
VPS28-216ENST00000533806 CAMKVQ8NCB2 501 aa12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms