RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 CABS1Q96KC9 395 aa14.34□□□□□ -0.11
CPSF1-208ENST00000532560 TMEM79Q9BSE2 394 aa14.34□□□□□ -0.11
CPSF1-208ENST00000532560 EPB41L4BQ9H329 900 aa14.34□□□□□ -0.11
CPSF1-208ENST00000532560 CNOT10Q9H9A5 744 aaKnown RBP14.34□□□□□ -0.11
CPSF1-208ENST00000532560 PELI2Q9HAT8 420 aa14.34□□□□□ -0.11
CPSF1-208ENST00000532560 SLC22A11Q9NSA0 550 aa14.34□□□□□ -0.11
CPSF1-208ENST00000532560 WWOXQ9NZC7 414 aa14.34□□□□□ -0.11
CPSF1-208ENST00000532560 CD274Q9NZQ7 290 aa14.34□□□□□ -0.11
CPSF1-208ENST00000532560 IFT80Q9P2H3 777 aaPredicted RBP14.34□□□□□ -0.11
CPSF1-208ENST00000532560 FETUBQ9UGM5 382 aa14.34□□□□□ -0.11
CPSF1-208ENST00000532560 GPN3Q9UHW5 284 aaPredicted RBP14.34□□□□□ -0.11
CPSF1-208ENST00000532560 POLHQ9Y253 713 aa14.34□□□□□ -0.11
CPSF1-208ENST00000532560 SLC22A14Q9Y267 594 aa14.34□□□□□ -0.11
CPSF1-208ENST00000532560 KCNE2Q9Y6J6 123 aa14.34□□□□□ -0.11
CPSF1-208ENST00000532560 TRBC2A0A5B9 178 aa14.33□□□□□ -0.12
CPSF1-208ENST00000532560 CDC14CA4D256 554 aa14.33□□□□□ -0.12
CPSF1-208ENST00000532560 SYCE1LA8MT33 242 aa14.33□□□□□ -0.12
CPSF1-208ENST00000532560 TAPBPO15533 448 aa14.33□□□□□ -0.12
CPSF1-208ENST00000532560 KLF7O75840 302 aaPredicted RBP14.33□□□□□ -0.12
CPSF1-208ENST00000532560 KLHL2O95198 593 aa14.33□□□□□ -0.12
CPSF1-208ENST00000532560 ALBP02768 609 aa14.33□□□□□ -0.12
CPSF1-208ENST00000532560 S100BP04271 92 aaPredicted RBP14.33□□□□□ -0.12
CPSF1-208ENST00000532560 FURINP09958 794 aa14.33□□□□□ -0.12
CPSF1-208ENST00000532560 GCAP28676 217 aa14.33□□□□□ -0.12
CPSF1-208ENST00000532560 KCNC1P48547 511 aa14.33□□□□□ -0.12
CPSF1-208ENST00000532560 REEP5Q00765 189 aa14.33□□□□□ -0.12
CPSF1-208ENST00000532560 COL9A2Q14055 689 aaPredicted RBP14.33□□□□□ -0.12
CPSF1-208ENST00000532560 SLC9A5Q14940 896 aa14.33□□□□□ -0.12
CPSF1-208ENST00000532560 ACAP2Q15057 778 aa14.33□□□□□ -0.12
CPSF1-208ENST00000532560 C18orf21Q32NC0 220 aaPredicted RBP14.33□□□□□ -0.12
CPSF1-208ENST00000532560 LINC00303Q3SY05 128 aa14.33□□□□□ -0.12
CPSF1-208ENST00000532560 MRPL14Q6P1L8 145 aaKnown RBP14.33□□□□□ -0.12
CPSF1-208ENST00000532560 KLC3Q6P597 504 aa14.33□□□□□ -0.12
CPSF1-208ENST00000532560 BORAQ6PGQ7 559 aa14.33□□□□□ -0.12
CPSF1-208ENST00000532560 COX15Q7KZN9 410 aa14.33□□□□□ -0.12
CPSF1-208ENST00000532560 TMPRSS11BQ86T26 416 aa14.33□□□□□ -0.12
CPSF1-208ENST00000532560 CNPY4Q8N129 248 aa14.33□□□□□ -0.12
CPSF1-208ENST00000532560 TBC1D19Q8N5T2 526 aa14.33□□□□□ -0.12
CPSF1-208ENST00000532560 MFSD9Q8NBP5 474 aa14.33□□□□□ -0.12
CPSF1-208ENST00000532560 ADAMTS17Q8TE56 1095 aa14.33□□□□□ -0.12
CPSF1-208ENST00000532560 UBTD2Q8WUN7 234 aa14.33□□□□□ -0.12
CPSF1-208ENST00000532560 EXT2Q93063 718 aa14.33□□□□□ -0.12
CPSF1-208ENST00000532560 TSNARE1Q96NA8 513 aa14.33□□□□□ -0.12
CPSF1-208ENST00000532560 BBC3Q96PG8 261 aaPredicted RBP14.33□□□□□ -0.12
CPSF1-208ENST00000532560 SLC26A1Q9H2B4 701 aa14.33□□□□□ -0.12
CPSF1-208ENST00000532560 WDR54Q9H977 334 aa14.33□□□□□ -0.12
CPSF1-208ENST00000532560 PTBP2Q9UKA9 531 aaKnown RBP14.33□□□□□ -0.12
CPSF1-208ENST00000532560 FEZF1A0PJY2 475 aa14.32□□□□□ -0.12
CPSF1-208ENST00000532560 SUPT3HB4E1H0 165 aa14.32□□□□□ -0.12
CPSF1-208ENST00000532560 TRIM49D1C9J1S8 452 aa14.32□□□□□ -0.12
CPSF1-208ENST00000532560 TK2O00142 265 aa14.32□□□□□ -0.12
CPSF1-208ENST00000532560 CNOT3O75175 753 aaKnown RBP14.32□□□□□ -0.12
CPSF1-208ENST00000532560 SUPT3HO75486 399 aa14.32□□□□□ -0.12
CPSF1-208ENST00000532560 SNRPAP09012 282 aaKnown RBP14.32□□□□□ -0.12
CPSF1-208ENST00000532560 GNAZP19086 355 aa14.32□□□□□ -0.12
CPSF1-208ENST00000532560 GDF5P43026 501 aa14.32□□□□□ -0.12
CPSF1-208ENST00000532560 CDC16Q13042 620 aa14.32□□□□□ -0.12
CPSF1-208ENST00000532560 FAM53BQ14153 422 aa14.32□□□□□ -0.12
CPSF1-208ENST00000532560 SLC29A2Q14542 456 aa14.32□□□□□ -0.12
CPSF1-208ENST00000532560 NDUFA9Q16795 377 aa14.32□□□□□ -0.12
CPSF1-208ENST00000532560 SOWAHCQ53LP3 525 aaPredicted RBP14.32□□□□□ -0.12
CPSF1-208ENST00000532560 CATSPEREQ5SY80 951 aa14.32□□□□□ -0.12
CPSF1-208ENST00000532560 LGSNQ5TDP6 509 aa14.32□□□□□ -0.12
CPSF1-208ENST00000532560 FAM69BQ5VUD6 431 aa14.32□□□□□ -0.12
CPSF1-208ENST00000532560 MLIPQ5VWP3 458 aa14.32□□□□□ -0.12
CPSF1-208ENST00000532560 ADGRD1Q6QNK2 874 aa14.32□□□□□ -0.12
CPSF1-208ENST00000532560 NXPE4Q6UWF7 544 aa14.32□□□□□ -0.12
CPSF1-208ENST00000532560 ASPGQ86U10 573 aa14.32□□□□□ -0.12
CPSF1-208ENST00000532560 DTWD1Q8N5C7 304 aa14.32□□□□□ -0.12
CPSF1-208ENST00000532560 METTL27Q8N6F8 245 aaPredicted RBP14.32□□□□□ -0.12
CPSF1-208ENST00000532560 CAMKVQ8NCB2 501 aa14.32□□□□□ -0.12
CPSF1-208ENST00000532560 OR2Y1Q8NGV0 311 aa14.32□□□□□ -0.12
CPSF1-208ENST00000532560 AENQ8WTP8 325 aaKnown RBP14.32□□□□□ -0.12
CPSF1-208ENST00000532560 THAP4Q8WY91 577 aa14.32□□□□□ -0.12
CPSF1-208ENST00000532560 TM4SF19Q96DZ7 209 aa14.32□□□□□ -0.12
CPSF1-208ENST00000532560 GPR78Q96P69 363 aa14.32□□□□□ -0.12
CPSF1-208ENST00000532560 AIF1LQ9BQI0 150 aa14.32□□□□□ -0.12
CPSF1-208ENST00000532560 DRC3Q9H069 523 aa14.32□□□□□ -0.12
CPSF1-208ENST00000532560 VPS11Q9H270 941 aa14.32□□□□□ -0.12
CPSF1-208ENST00000532560 SPNS1Q9H2V7 528 aa14.32□□□□□ -0.12
CPSF1-208ENST00000532560 DNAJC11Q9NVH1 559 aa14.32□□□□□ -0.12
CPSF1-208ENST00000532560 GPRC5BQ9NZH0 403 aa14.32□□□□□ -0.12
CPSF1-208ENST00000532560 CDC14AQ9UNH5 594 aa14.32□□□□□ -0.12
CPSF1-208ENST00000532560 IGSF10Q6WRI0 2623 aa14.32□□□□□ -0.12
CPSF1-208ENST00000532560 UBXN8O00124 270 aa14.31□□□□□ -0.12
CPSF1-208ENST00000532560 POLR3GO15318 223 aaPredicted RBP14.31□□□□□ -0.12
CPSF1-208ENST00000532560 PRPF4O43172 522 aaKnown RBP eCLIP14.31□□□□□ -0.12
CPSF1-208ENST00000532560 LCMT2O60294 686 aaKnown RBP14.31□□□□□ -0.12
CPSF1-208ENST00000532560 STK16O75716 305 aa14.31□□□□□ -0.12
CPSF1-208ENST00000532560 SLC35G6P0C7Q6 338 aa14.31□□□□□ -0.12
CPSF1-208ENST00000532560 MTHFD2P13995 350 aa14.31□□□□□ -0.12
CPSF1-208ENST00000532560 AHRP35869 848 aa14.31□□□□□ -0.12
CPSF1-208ENST00000532560 FOLR3P41439 243 aa14.31□□□□□ -0.12
CPSF1-208ENST00000532560 SCTRP47872 440 aa14.31□□□□□ -0.12
CPSF1-208ENST00000532560 OR1D4P47884 311 aa14.31□□□□□ -0.12
CPSF1-208ENST00000532560 GLRBP48167 497 aa14.31□□□□□ -0.12
CPSF1-208ENST00000532560 HSPA7P48741 367 aa14.31□□□□□ -0.12
CPSF1-208ENST00000532560 MEF2AQ02078 507 aaPredicted RBP14.31□□□□□ -0.12
CPSF1-208ENST00000532560 DSG2Q14126 1118 aa14.31□□□□□ -0.12
CPSF1-208ENST00000532560 PDK4Q16654 411 aa14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms