RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 SPATA18Q8TC71 538 aa3.39□□□□□ -1.87
CD44-217ENST00000525348 SMAP2Q8WU79 429 aaPredicted RBP3.39□□□□□ -1.87
CD44-217ENST00000525348 TCP11Q8WWU5 503 aa3.39□□□□□ -1.87
CD44-217ENST00000525348 ZNF606Q8WXB4 792 aa3.39□□□□□ -1.87
CD44-217ENST00000525348 PIGBQ92521 554 aa3.39□□□□□ -1.87
CD44-217ENST00000525348 ARHGAP45Q92619 1136 aa3.39□□□□□ -1.87
CD44-217ENST00000525348 SPACA9Q96E40 222 aaPredicted RBP3.39□□□□□ -1.87
CD44-217ENST00000525348 DCTN5Q9BTE1 182 aa3.39□□□□□ -1.87
CD44-217ENST00000525348 NACAP1Q9BZK3 213 aa3.39□□□□□ -1.87
CD44-217ENST00000525348 UBXN6Q9BZV1 441 aa3.39□□□□□ -1.87
CD44-217ENST00000525348 WNT5BQ9H1J7 359 aa3.39□□□□□ -1.87
CD44-217ENST00000525348 GRPEL1Q9HAV7 217 aa3.39□□□□□ -1.87
CD44-217ENST00000525348 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP3.39□□□□□ -1.87
CD44-217ENST00000525348 GKN1Q9NS71 199 aa3.39□□□□□ -1.87
CD44-217ENST00000525348 MAN2C1Q9NTJ4 1040 aa3.39□□□□□ -1.87
CD44-217ENST00000525348 PANK4Q9NVE7 773 aa3.39□□□□□ -1.87
CD44-217ENST00000525348 PRMT7Q9NVM4 692 aaPredicted RBP3.39□□□□□ -1.87
CD44-217ENST00000525348 IL20Q9NYY1 176 aa3.39□□□□□ -1.87
CD44-217ENST00000525348 GDE1Q9NZC3 331 aa3.39□□□□□ -1.87
CD44-217ENST00000525348 TUBGCP4Q9UGJ1 667 aa3.39□□□□□ -1.87
CD44-217ENST00000525348 CTNNA3Q9UI47 895 aa3.39□□□□□ -1.87
CD44-217ENST00000525348 TNNQ9UQP3 1299 aa3.39□□□□□ -1.87
CD44-217ENST00000525348 PRELID1Q9Y255 219 aa3.39□□□□□ -1.87
CD44-217ENST00000525348 TMED3Q9Y3Q3 217 aa3.39□□□□□ -1.87
CD44-217ENST00000525348 TRIM17Q9Y577 477 aa3.39□□□□□ -1.87
CD44-217ENST00000525348 MAGED1Q9Y5V3 778 aaPredicted RBP3.39□□□□□ -1.87
CD44-217ENST00000525348 MAP3K4Q9Y6R4 1608 aa3.39□□□□□ -1.87
CD44-217ENST00000525348 IBTKQ9P2D0 1353 aaPredicted RBP3.38□□□□□ -1.87
CD44-217ENST00000525348 NUP160Q12769 1436 aa3.38□□□□□ -1.87
CD44-217ENST00000525348 A0A1W2PPM1 405 aa3.38□□□□□ -1.87
CD44-217ENST00000525348 C15orf61A6NNL5 157 aa3.38□□□□□ -1.87
CD44-217ENST00000525348 TTI1O43156 1089 aa3.38□□□□□ -1.87
CD44-217ENST00000525348 ADAM20O43506 726 aa3.38□□□□□ -1.87
CD44-217ENST00000525348 STAMBPO95630 424 aa3.38□□□□□ -1.87
CD44-217ENST00000525348 RPS2P15880 293 aaKnown RBP3.38□□□□□ -1.87
CD44-217ENST00000525348 GATA1P15976 413 aaPredicted RBP3.38□□□□□ -1.87
CD44-217ENST00000525348 SAT1P21673 171 aa3.38□□□□□ -1.87
CD44-217ENST00000525348 MSNP26038 577 aaKnown RBP3.38□□□□□ -1.87
CD44-217ENST00000525348 KRT2P35908 639 aa3.38□□□□□ -1.87
CD44-217ENST00000525348 MMP12P39900 470 aa3.38□□□□□ -1.87
CD44-217ENST00000525348 HNF4AP41235 474 aa3.38□□□□□ -1.87
CD44-217ENST00000525348 RANBP1P43487 201 aa3.38□□□□□ -1.87
CD44-217ENST00000525348 RPL21P46778 160 aaKnown RBP3.38□□□□□ -1.87
CD44-217ENST00000525348 MNAT1P51948 309 aa3.38□□□□□ -1.87
CD44-217ENST00000525348 PAX9P55771 341 aa3.38□□□□□ -1.87
CD44-217ENST00000525348 ARPC4P59998 168 aa3.38□□□□□ -1.87
CD44-217ENST00000525348 SMC1AQ14683 1233 aaKnown RBP3.38□□□□□ -1.87
CD44-217ENST00000525348 NECTIN1Q15223 517 aa3.38□□□□□ -1.87
CD44-217ENST00000525348 SYCP1Q15431 976 aa3.38□□□□□ -1.87
CD44-217ENST00000525348 CBWD6Q4V339 395 aa3.38□□□□□ -1.87
CD44-217ENST00000525348 CBWD3Q5JTY5 395 aa3.38□□□□□ -1.87
CD44-217ENST00000525348 METTL11BQ5VVY1 283 aa3.38□□□□□ -1.87
CD44-217ENST00000525348 BSPRYQ5W0U4 402 aa3.38□□□□□ -1.87
CD44-217ENST00000525348 MZT2BQ6NZ67 158 aa3.38□□□□□ -1.87
CD44-217ENST00000525348 ABRAXAS1Q6UWZ7 409 aa3.38□□□□□ -1.87
CD44-217ENST00000525348 RAPH1Q70E73 1250 aa3.38□□□□□ -1.87
CD44-217ENST00000525348 HOOK3Q86VS8 718 aa3.38□□□□□ -1.87
CD44-217ENST00000525348 NUDT13Q86X67 352 aa3.38□□□□□ -1.87
CD44-217ENST00000525348 DZIP1Q86YF9 867 aaKnown RBP3.38□□□□□ -1.87
CD44-217ENST00000525348 GRAMD2AQ8IUY3 354 aa3.38□□□□□ -1.87
CD44-217ENST00000525348 MMD2Q8IY49 270 aa3.38□□□□□ -1.87
CD44-217ENST00000525348 CARNMT1Q8N4J0 409 aa3.38□□□□□ -1.87
CD44-217ENST00000525348 SPEM1Q8N4L4 309 aa3.38□□□□□ -1.87
CD44-217ENST00000525348 OR10G8Q8NGN5 311 aa3.38□□□□□ -1.87
CD44-217ENST00000525348 OR1L3Q8NH93 324 aa3.38□□□□□ -1.87
CD44-217ENST00000525348 KIAA1524Q8TCG1 905 aa3.38□□□□□ -1.87
CD44-217ENST00000525348 MIPOL1Q8TD10 442 aa3.38□□□□□ -1.87
CD44-217ENST00000525348 SYN2Q92777 582 aaPredicted RBP3.38□□□□□ -1.87
CD44-217ENST00000525348 NXNL1Q96CM4 212 aa3.38□□□□□ -1.87
CD44-217ENST00000525348 OMA1Q96E52 524 aa3.38□□□□□ -1.87
CD44-217ENST00000525348 CFAP36Q96G28 342 aa3.38□□□□□ -1.87
CD44-217ENST00000525348 ZNF486Q96H40 463 aaPredicted RBP3.38□□□□□ -1.87
CD44-217ENST00000525348 EPSTI1Q96J88 318 aa3.38□□□□□ -1.87
CD44-217ENST00000525348 NSMCE3Q96MG7 304 aa3.38□□□□□ -1.87
CD44-217ENST00000525348 NAP1L3Q99457 506 aaPredicted RBP3.38□□□□□ -1.87
CD44-217ENST00000525348 TRIM51Q9BSJ1 452 aa3.38□□□□□ -1.87
CD44-217ENST00000525348 AP1M1Q9BXS5 423 aa3.38□□□□□ -1.87
CD44-217ENST00000525348 MYNNQ9NPC7 610 aa3.38□□□□□ -1.87
CD44-217ENST00000525348 RPS10P5Q9NQ39 176 aa3.38□□□□□ -1.87
CD44-217ENST00000525348 FAM207AQ9NSI2 230 aaPredicted RBP3.38□□□□□ -1.87
CD44-217ENST00000525348 AIPL1Q9NZN9 384 aa3.38□□□□□ -1.87
CD44-217ENST00000525348 MRPL15Q9P015 296 aaKnown RBP3.38□□□□□ -1.87
CD44-217ENST00000525348 ABT1Q9ULW3 272 aaKnown RBP3.38□□□□□ -1.87
CD44-217ENST00000525348 PPP1R3CQ9UQK1 317 aa3.38□□□□□ -1.87
CD44-217ENST00000525348 PADI2Q9Y2J8 665 aa3.38□□□□□ -1.87
CD44-217ENST00000525348 ADAMTSL3P82987 1691 aa3.38□□□□□ -1.87
CD44-217ENST00000525348 ABCC2Q92887 1545 aa3.38□□□□□ -1.87
CD44-217ENST00000525348 MED1Q15648 1581 aaPredicted RBP3.38□□□□□ -1.87
CD44-217ENST00000525348 BCORL1Q5H9F3 1711 aa3.37□□□□□ -1.87
CD44-217ENST00000525348 A0A1W2PR80 420 aa3.37□□□□□ -1.87
CD44-217ENST00000525348 TRIM64A6NGJ6 449 aa3.37□□□□□ -1.87
CD44-217ENST00000525348 TRIM64BA6NI03 449 aa3.37□□□□□ -1.87
CD44-217ENST00000525348 NXPH2O95156 264 aa3.37□□□□□ -1.87
CD44-217ENST00000525348 SEC24AO95486 1093 aa3.37□□□□□ -1.87
CD44-217ENST00000525348 IGHV2-70P01814 119 aa3.37□□□□□ -1.87
CD44-217ENST00000525348 GATA2P23769 480 aaPredicted RBP3.37□□□□□ -1.87
CD44-217ENST00000525348 ATP5DP30049 168 aa3.37□□□□□ -1.87
CD44-217ENST00000525348 NF2P35240 595 aa3.37□□□□□ -1.87
CD44-217ENST00000525348 LIMK1P53667 647 aa3.37□□□□□ -1.87
CD44-217ENST00000525348 B2MP61769 119 aa3.37□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms