RNA–Protein interactions for RNA: ENST00000513562.1

DDX41-216, Transcript of DEAD-box helicase 41, humanhuman

TSL 4

Gene DDX41, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-216ENST00000513562 ACVR1Q04771 509 aa10.28□□□□□ -0.76
DDX41-216ENST00000513562 PMPCAQ10713 525 aa10.28□□□□□ -0.76
DDX41-216ENST00000513562 USP10Q14694 798 aaKnown RBP10.28□□□□□ -0.76
DDX41-216ENST00000513562 NDUFA9Q16795 377 aa10.28□□□□□ -0.76
DDX41-216ENST00000513562 SFT2D3Q587I9 215 aa10.28□□□□□ -0.76
DDX41-216ENST00000513562 EMC4Q5J8M3 183 aa10.28□□□□□ -0.76
DDX41-216ENST00000513562 ARHGAP11AQ6P4F7 1023 aa10.28□□□□□ -0.76
DDX41-216ENST00000513562 DARS2Q6PI48 645 aaKnown RBP10.28□□□□□ -0.76
DDX41-216ENST00000513562 ACAD11Q709F0 780 aa10.28□□□□□ -0.76
DDX41-216ENST00000513562 Q71RC1 249 aaPredicted RBP10.28□□□□□ -0.76
DDX41-216ENST00000513562 CAMKMTQ7Z624 323 aa10.28□□□□□ -0.76
DDX41-216ENST00000513562 OR4L1Q8NH43 312 aa10.28□□□□□ -0.76
DDX41-216ENST00000513562 OR51Q1Q8NH59 317 aa10.28□□□□□ -0.76
DDX41-216ENST00000513562 C16orf52Q8NHV5 167 aa10.28□□□□□ -0.76
DDX41-216ENST00000513562 MAGEC3Q8TD91 643 aa10.28□□□□□ -0.76
DDX41-216ENST00000513562 NANOS1Q8WY41 292 aaKnown RBP10.28□□□□□ -0.76
DDX41-216ENST00000513562 KRT35Q92764 455 aa10.28□□□□□ -0.76
DDX41-216ENST00000513562 LPAR4Q99677 370 aa10.28□□□□□ -0.76
DDX41-216ENST00000513562 FAM118BQ9BPY3 351 aa10.28□□□□□ -0.76
DDX41-216ENST00000513562 GPATCH1Q9BRR8 931 aaKnown RBP10.28□□□□□ -0.76
DDX41-216ENST00000513562 CDCP1Q9H5V8 836 aa10.28□□□□□ -0.76
DDX41-216ENST00000513562 RASSF1Q9NS23 344 aa10.28□□□□□ -0.76
DDX41-216ENST00000513562 UTP6Q9NYH9 597 aaKnown RBP10.28□□□□□ -0.76
DDX41-216ENST00000513562 SLC2A6Q9UGQ3 507 aa10.28□□□□□ -0.76
DDX41-216ENST00000513562 PCYOX1Q9UHG3 505 aa10.28□□□□□ -0.76
DDX41-216ENST00000513562 EFR3BQ9Y2G0 817 aa10.28□□□□□ -0.76
DDX41-216ENST00000513562 R3HDM2Q9Y2K5 976 aaKnown RBP10.28□□□□□ -0.76
DDX41-216ENST00000513562 SBDSQ9Y3A5 250 aaKnown RBP eCLIP10.28□□□□□ -0.76
DDX41-216ENST00000513562 PRMT5O14744 637 aaPredicted RBP10.27□□□□□ -0.77
DDX41-216ENST00000513562 HS6ST1O60243 411 aa10.27□□□□□ -0.77
DDX41-216ENST00000513562 PRMT3O60678 531 aa10.27□□□□□ -0.77
DDX41-216ENST00000513562 ZNF189O75820 626 aaPredicted RBP10.27□□□□□ -0.77
DDX41-216ENST00000513562 CTNNA2P26232 953 aa10.27□□□□□ -0.77
DDX41-216ENST00000513562 RPA3P35244 121 aaPredicted RBP10.27□□□□□ -0.77
DDX41-216ENST00000513562 PPARGP37231 505 aaPredicted RBP10.27□□□□□ -0.77
DDX41-216ENST00000513562 DGKQP52824 942 aa10.27□□□□□ -0.77
DDX41-216ENST00000513562 ITGA8P53708 1063 aa10.27□□□□□ -0.77
DDX41-216ENST00000513562 HADHBP55084 474 aaKnown RBP10.27□□□□□ -0.77
DDX41-216ENST00000513562 COPS2P61201 443 aa10.27□□□□□ -0.77
DDX41-216ENST00000513562 PRDX1Q06830 199 aaKnown RBP10.27□□□□□ -0.77
DDX41-216ENST00000513562 EEF1AKMT2Q5JPI9 291 aaKnown RBP10.27□□□□□ -0.77
DDX41-216ENST00000513562 AARS2Q5JTZ9 985 aaKnown RBP10.27□□□□□ -0.77
DDX41-216ENST00000513562 ICE2Q659A1 982 aa10.27□□□□□ -0.77
DDX41-216ENST00000513562 SUSD1Q6UWL2 747 aa10.27□□□□□ -0.77
DDX41-216ENST00000513562 OTOAQ7RTW8 1153 aa10.27□□□□□ -0.77
DDX41-216ENST00000513562 PRSS41Q7RTY9 318 aa10.27□□□□□ -0.77
DDX41-216ENST00000513562 RPS19BP1Q86WX3 136 aaKnown RBP10.27□□□□□ -0.77
DDX41-216ENST00000513562 PRIMA1Q86XR5 153 aa10.27□□□□□ -0.77
DDX41-216ENST00000513562 ZZZ3Q8IYH5 903 aa10.27□□□□□ -0.77
DDX41-216ENST00000513562 ZFP62Q8NB50 900 aaPredicted RBP10.27□□□□□ -0.77
DDX41-216ENST00000513562 WFDC11Q8NEX6 87 aa10.27□□□□□ -0.77
DDX41-216ENST00000513562 ELP5Q8TE02 316 aa10.27□□□□□ -0.77
DDX41-216ENST00000513562 SKA2Q8WVK7 121 aaPredicted RBP10.27□□□□□ -0.77
DDX41-216ENST00000513562 SMPDL3AQ92484 453 aa10.27□□□□□ -0.77
DDX41-216ENST00000513562 TMEM125Q96AQ2 219 aa10.27□□□□□ -0.77
DDX41-216ENST00000513562 ARSGQ96EG1 525 aa10.27□□□□□ -0.77
DDX41-216ENST00000513562 MRFAP1L1Q96HT8 127 aa10.27□□□□□ -0.77
DDX41-216ENST00000513562 C18orf12Q96KH6 178 aa10.27□□□□□ -0.77
DDX41-216ENST00000513562 FOPNLQ96NB1 174 aa10.27□□□□□ -0.77
DDX41-216ENST00000513562 PANX3Q96QZ0 392 aa10.27□□□□□ -0.77
DDX41-216ENST00000513562 REPIN1Q9BWE0 567 aaKnown RBP10.27□□□□□ -0.77
DDX41-216ENST00000513562 HCN3Q9P1Z3 774 aa10.27□□□□□ -0.77
DDX41-216ENST00000513562 TAC3Q9UHF0 121 aa10.27□□□□□ -0.77
DDX41-216ENST00000513562 INTUQ9ULD6 942 aa10.27□□□□□ -0.77
DDX41-216ENST00000513562 RIMKLBQ9ULI2 386 aa10.27□□□□□ -0.77
DDX41-216ENST00000513562 EDARQ9UNE0 448 aa10.27□□□□□ -0.77
DDX41-216ENST00000513562 KLF13Q9Y2Y9 288 aaPredicted RBP10.27□□□□□ -0.77
DDX41-216ENST00000513562 ARHGEF33A8MVX0 844 aa10.26□□□□□ -0.77
DDX41-216ENST00000513562 KIAA1324LA8MWY0 1029 aaPredicted RBP10.26□□□□□ -0.77
DDX41-216ENST00000513562 KLRC4-KLRK1H3BQV0 150 aa10.26□□□□□ -0.77
DDX41-216ENST00000513562 MYO1CO00159 1063 aa10.26□□□□□ -0.77
DDX41-216ENST00000513562 HAT1O14929 419 aa10.26□□□□□ -0.77
DDX41-216ENST00000513562 KPNA5O15131 536 aa10.26□□□□□ -0.77
DDX41-216ENST00000513562 CCNDBP1O95273 360 aa10.26□□□□□ -0.77
DDX41-216ENST00000513562 MATN4O95460 622 aa10.26□□□□□ -0.77
DDX41-216ENST00000513562 PTPN7P35236 360 aa10.26□□□□□ -0.77
DDX41-216ENST00000513562 RFC3P40938 356 aa10.26□□□□□ -0.77
DDX41-216ENST00000513562 BCL6P41182 706 aa10.26□□□□□ -0.77
DDX41-216ENST00000513562 HLCSP50747 726 aa10.26□□□□□ -0.77
DDX41-216ENST00000513562 RHAGQ02094 409 aa10.26□□□□□ -0.77
DDX41-216ENST00000513562 ACTN3Q08043 901 aaPredicted RBP10.26□□□□□ -0.77
DDX41-216ENST00000513562 ARHGAP19Q14CB8 494 aa10.26□□□□□ -0.77
DDX41-216ENST00000513562 ABRAXAS2Q15018 415 aa10.26□□□□□ -0.77
DDX41-216ENST00000513562 NSDHLQ15738 373 aa10.26□□□□□ -0.77
DDX41-216ENST00000513562 P3H1Q32P28 736 aa10.26□□□□□ -0.77
DDX41-216ENST00000513562 FASTKD1Q53R41 847 aaKnown RBP10.26□□□□□ -0.77
DDX41-216ENST00000513562 TSTD2Q5T7W7 516 aa10.26□□□□□ -0.77
DDX41-216ENST00000513562 PTRHD1Q6GMV3 140 aaKnown RBP10.26□□□□□ -0.77
DDX41-216ENST00000513562 ARSKQ6UWY0 536 aa10.26□□□□□ -0.77
DDX41-216ENST00000513562 PAMR1Q6UXH9 720 aa10.26□□□□□ -0.77
DDX41-216ENST00000513562 LDB1Q86U70 411 aaPredicted RBP10.26□□□□□ -0.77
DDX41-216ENST00000513562 CDC20BQ86Y33 519 aa10.26□□□□□ -0.77
DDX41-216ENST00000513562 SULF2Q8IWU5 870 aa10.26□□□□□ -0.77
DDX41-216ENST00000513562 KIF2BQ8N4N8 673 aa10.26□□□□□ -0.77
DDX41-216ENST00000513562 PLPP5Q8NEB5 264 aa10.26□□□□□ -0.77
DDX41-216ENST00000513562 OR8K1Q8NGG5 319 aa10.26□□□□□ -0.77
DDX41-216ENST00000513562 OR9A1PQ8NGU1 263 aa10.26□□□□□ -0.77
DDX41-216ENST00000513562 OR6P1Q8NGX9 317 aa10.26□□□□□ -0.77
DDX41-216ENST00000513562 MCOLN3Q8TDD5 553 aa10.26□□□□□ -0.77
DDX41-216ENST00000513562 ZNF778Q96MU6 729 aa10.26□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms