RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 HLA-DOAP06340 250 aa11.67□□□□□ -0.54
LIMCH1-213ENST00000511496 S100A9P06702 114 aaKnown RBP11.67□□□□□ -0.54
LIMCH1-213ENST00000511496 ANXA3P12429 323 aa11.67□□□□□ -0.54
LIMCH1-213ENST00000511496 STAT5BP51692 787 aa11.67□□□□□ -0.54
LIMCH1-213ENST00000511496 HK3P52790 923 aa11.67□□□□□ -0.54
LIMCH1-213ENST00000511496 IL18Q14116 193 aa11.67□□□□□ -0.54
LIMCH1-213ENST00000511496 MICAQ29983 383 aa11.67□□□□□ -0.54
LIMCH1-213ENST00000511496 GPR33Q49SQ1 333 aa11.67□□□□□ -0.54
LIMCH1-213ENST00000511496 ZNF605Q86T29 641 aa11.67□□□□□ -0.54
LIMCH1-213ENST00000511496 FAM131BQ86XD5 332 aa11.67□□□□□ -0.54
LIMCH1-213ENST00000511496 GOT1L1Q8NHS2 421 aaPredicted RBP11.67□□□□□ -0.54
LIMCH1-213ENST00000511496 MARVELD1Q9BSK0 173 aa11.67□□□□□ -0.54
LIMCH1-213ENST00000511496 IKZF5Q9H5V7 419 aa11.67□□□□□ -0.54
LIMCH1-213ENST00000511496 GORASP2Q9H8Y8 452 aa11.67□□□□□ -0.54
LIMCH1-213ENST00000511496 LYARQ9NX58 379 aaKnown RBP11.67□□□□□ -0.54
LIMCH1-213ENST00000511496 MAP3K20Q9NYL2 800 aaKnown RBP11.67□□□□□ -0.54
LIMCH1-213ENST00000511496 SLC2A6Q9UGQ3 507 aa11.67□□□□□ -0.54
LIMCH1-213ENST00000511496 COL1A2P08123 1366 aa11.67□□□□□ -0.54
LIMCH1-213ENST00000511496 LOC105369274A0A096LPK9 316 aa11.67□□□□□ -0.54
LIMCH1-213ENST00000511496 NBNO60934 754 aa11.67□□□□□ -0.54
LIMCH1-213ENST00000511496 CREG1O75629 220 aa11.67□□□□□ -0.54
LIMCH1-213ENST00000511496 LPLP06858 475 aa11.67□□□□□ -0.54
LIMCH1-213ENST00000511496 OGNP20774 298 aaKnown RBP11.67□□□□□ -0.54
LIMCH1-213ENST00000511496 ASPAP45381 313 aa11.67□□□□□ -0.54
LIMCH1-213ENST00000511496 PREPP48147 710 aa11.67□□□□□ -0.54
LIMCH1-213ENST00000511496 RAB13P51153 203 aa11.67□□□□□ -0.54
LIMCH1-213ENST00000511496 STRIP1Q5VSL9 837 aa11.67□□□□□ -0.54
LIMCH1-213ENST00000511496 KDM4DQ6B0I6 523 aa11.67□□□□□ -0.54
LIMCH1-213ENST00000511496 VASNQ6EMK4 673 aa11.67□□□□□ -0.54
LIMCH1-213ENST00000511496 ZNF425Q6IV72 752 aa11.67□□□□□ -0.54
LIMCH1-213ENST00000511496 OR4N4Q8N0Y3 316 aa11.67□□□□□ -0.54
LIMCH1-213ENST00000511496 LNX2Q8N448 690 aa11.67□□□□□ -0.54
LIMCH1-213ENST00000511496 CERS5Q8N5B7 392 aa11.67□□□□□ -0.54
LIMCH1-213ENST00000511496 TMEM203Q969S6 136 aa11.67□□□□□ -0.54
LIMCH1-213ENST00000511496 NXPE2Q96DL1 559 aa11.67□□□□□ -0.54
LIMCH1-213ENST00000511496 GMCL1Q96IK5 515 aa11.67□□□□□ -0.54
LIMCH1-213ENST00000511496 CHURC1-FNTBB4DL54 471 aa11.67□□□□□ -0.54
LIMCH1-213ENST00000511496 MDM4O15151 490 aa11.67□□□□□ -0.54
LIMCH1-213ENST00000511496 CKMT1AP12532 417 aa11.67□□□□□ -0.54
LIMCH1-213ENST00000511496 CRKLP46109 303 aaKnown RBP11.67□□□□□ -0.54
LIMCH1-213ENST00000511496 ZFP36L2P47974 494 aaKnown RBP11.67□□□□□ -0.54
LIMCH1-213ENST00000511496 HSPA2P54652 639 aa11.67□□□□□ -0.54
LIMCH1-213ENST00000511496 P2RY14Q15391 338 aa11.67□□□□□ -0.54
LIMCH1-213ENST00000511496 TEAD4Q15561 434 aa11.67□□□□□ -0.54
LIMCH1-213ENST00000511496 DUOXA2Q1HG44 320 aa11.67□□□□□ -0.54
LIMCH1-213ENST00000511496 HES5Q5TA89 166 aa11.67□□□□□ -0.54
LIMCH1-213ENST00000511496 TMEM88Q6PEY1 159 aa11.67□□□□□ -0.54
LIMCH1-213ENST00000511496 ASB18Q6ZVZ8 466 aa11.67□□□□□ -0.54
LIMCH1-213ENST00000511496 C4orf19Q8IY42 314 aa11.67□□□□□ -0.54
LIMCH1-213ENST00000511496 ZFP82Q8N141 532 aa11.67□□□□□ -0.54
LIMCH1-213ENST00000511496 FTMTQ8N4E7 242 aa11.67□□□□□ -0.54
LIMCH1-213ENST00000511496 TMEM145Q8NBT3 493 aa11.67□□□□□ -0.54
LIMCH1-213ENST00000511496 GPR152Q8TDT2 470 aa11.67□□□□□ -0.54
LIMCH1-213ENST00000511496 ISG20Q96AZ6 181 aaKnown RBP11.67□□□□□ -0.54
LIMCH1-213ENST00000511496 ELP4Q96EB1 424 aa11.67□□□□□ -0.54
LIMCH1-213ENST00000511496 DPYSL5Q9BPU6 564 aa11.67□□□□□ -0.54
LIMCH1-213ENST00000511496 BIN3Q9NQY0 253 aa11.67□□□□□ -0.54
LIMCH1-213ENST00000511496 AIG1Q9NVV5 245 aa11.67□□□□□ -0.54
LIMCH1-213ENST00000511496 AOC2O75106 756 aa11.66□□□□□ -0.54
LIMCH1-213ENST00000511496 RLN2P04090 185 aa11.66□□□□□ -0.54
LIMCH1-213ENST00000511496 STOMP27105 288 aa11.66□□□□□ -0.54
LIMCH1-213ENST00000511496 PRKAR1BP31321 381 aa11.66□□□□□ -0.54
LIMCH1-213ENST00000511496 CAV3P56539 151 aa11.66□□□□□ -0.54
LIMCH1-213ENST00000511496 SSX1Q16384 188 aa11.66□□□□□ -0.54
LIMCH1-213ENST00000511496 DDI2Q5TDH0 399 aa11.66□□□□□ -0.54
LIMCH1-213ENST00000511496 ALKBH2Q6NS38 261 aa11.66□□□□□ -0.54
LIMCH1-213ENST00000511496 USP45Q70EL2 814 aa11.66□□□□□ -0.54
LIMCH1-213ENST00000511496 DUSP18Q8NEJ0 188 aa11.66□□□□□ -0.54
LIMCH1-213ENST00000511496 PROKR1Q8TCW9 393 aa11.66□□□□□ -0.54
LIMCH1-213ENST00000511496 WBP1Q96G27 269 aa11.66□□□□□ -0.54
LIMCH1-213ENST00000511496 ZDHHC4Q9NPG8 344 aa11.66□□□□□ -0.54
LIMCH1-213ENST00000511496 CD93Q9NPY3 652 aa11.66□□□□□ -0.54
LIMCH1-213ENST00000511496 PCDHGA6Q9Y5G7 932 aa11.66□□□□□ -0.54
LIMCH1-213ENST00000511496 SLC28A1O00337 649 aa11.66□□□□□ -0.54
LIMCH1-213ENST00000511496 PER2O15055 1255 aa11.66□□□□□ -0.54
LIMCH1-213ENST00000511496 CBR1P16152 277 aa11.66□□□□□ -0.54
LIMCH1-213ENST00000511496 POU3F2P20265 443 aaPredicted RBP11.66□□□□□ -0.54
LIMCH1-213ENST00000511496 PTAFRP25105 342 aa11.66□□□□□ -0.54
LIMCH1-213ENST00000511496 KCNJ3P48549 501 aa11.66□□□□□ -0.54
LIMCH1-213ENST00000511496 EVA1CP58658 441 aa11.66□□□□□ -0.54
LIMCH1-213ENST00000511496 CAMK2GQ13555 558 aaPredicted RBP11.66□□□□□ -0.54
LIMCH1-213ENST00000511496 HFEQ30201 348 aa11.66□□□□□ -0.54
LIMCH1-213ENST00000511496 PRAMEF19Q5SWL8 479 aa11.66□□□□□ -0.54
LIMCH1-213ENST00000511496 OR2T5Q6IEZ7 315 aa11.66□□□□□ -0.54
LIMCH1-213ENST00000511496 MSANTD2Q6P1R3 559 aa11.66□□□□□ -0.54
LIMCH1-213ENST00000511496 CHPFQ8IZ52 775 aa11.66□□□□□ -0.54
LIMCH1-213ENST00000511496 TMEM132CQ8N3T6 1108 aa11.66□□□□□ -0.54
LIMCH1-213ENST00000511496 OR2T29Q8NH02 315 aa11.66□□□□□ -0.54
LIMCH1-213ENST00000511496 BTN2A2Q8WVV5 523 aa11.66□□□□□ -0.54
LIMCH1-213ENST00000511496 LRRC46Q96FV0 321 aa11.66□□□□□ -0.54
LIMCH1-213ENST00000511496 NARS2Q96I59 477 aaKnown RBP11.66□□□□□ -0.54
LIMCH1-213ENST00000511496 CRB3Q9BUF7 120 aa11.66□□□□□ -0.54
LIMCH1-213ENST00000511496 MND1Q9BWT6 205 aa11.66□□□□□ -0.54
LIMCH1-213ENST00000511496 HDHD2Q9H0R4 259 aa11.66□□□□□ -0.54
LIMCH1-213ENST00000511496 FAM234BA2RU67 622 aa11.66□□□□□ -0.54
LIMCH1-213ENST00000511496 TRABD2BA6NFA1 517 aa11.66□□□□□ -0.54
LIMCH1-213ENST00000511496 STMND1H3BQB6 276 aa11.66□□□□□ -0.54
LIMCH1-213ENST00000511496 EIF3GO75821 320 aaKnown RBP eCLIP11.66□□□□□ -0.54
LIMCH1-213ENST00000511496 C9P02748 559 aa11.66□□□□□ -0.54
LIMCH1-213ENST00000511496 NFKB1P19838 968 aa11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms