RNA–Protein interactions for RNA: ENST00000508501.5

LIMCH1-208, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,054 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-208ENST00000508501 TIFABQ6ZNK6 161 aa10.93□□□□□ -0.66
LIMCH1-208ENST00000508501 CREB3L2Q70SY1 520 aa10.93□□□□□ -0.66
LIMCH1-208ENST00000508501 C16orf59Q7L2K0 433 aa10.93□□□□□ -0.66
LIMCH1-208ENST00000508501 MON1AQ86VX9 555 aa10.93□□□□□ -0.66
LIMCH1-208ENST00000508501 ZNF527Q8NB42 609 aa10.93□□□□□ -0.66
LIMCH1-208ENST00000508501 PWWP2AQ96N64 755 aa10.93□□□□□ -0.66
LIMCH1-208ENST00000508501 TMED9Q9BVK6 235 aa10.93□□□□□ -0.66
LIMCH1-208ENST00000508501 PCDHAC1Q9H158 963 aa10.93□□□□□ -0.66
LIMCH1-208ENST00000508501 TUT1Q9H6E5 874 aaKnown RBP10.93□□□□□ -0.66
LIMCH1-208ENST00000508501 OR2S2Q9NQN1 319 aa10.93□□□□□ -0.66
LIMCH1-208ENST00000508501 CNTN3Q9P232 1028 aa10.93□□□□□ -0.66
LIMCH1-208ENST00000508501 ANKMY1Q9P2S6 941 aa10.93□□□□□ -0.66
LIMCH1-208ENST00000508501 ASTN1O14525 1302 aa10.93□□□□□ -0.66
LIMCH1-208ENST00000508501 CCND3P30281 292 aaPredicted RBP10.93□□□□□ -0.66
LIMCH1-208ENST00000508501 BMP8BP34820 402 aa10.93□□□□□ -0.66
LIMCH1-208ENST00000508501 EIF2DP41214 584 aaKnown RBP10.93□□□□□ -0.66
LIMCH1-208ENST00000508501 CDH8P55286 799 aa10.93□□□□□ -0.66
LIMCH1-208ENST00000508501 MTPNP58546 118 aa10.93□□□□□ -0.66
LIMCH1-208ENST00000508501 FXYD6P3P58550 94 aa10.93□□□□□ -0.66
LIMCH1-208ENST00000508501 GBE1Q04446 702 aa10.93□□□□□ -0.66
LIMCH1-208ENST00000508501 NFATC3Q12968 1075 aa10.93□□□□□ -0.66
LIMCH1-208ENST00000508501 MADCAM1Q13477 382 aa10.93□□□□□ -0.66
LIMCH1-208ENST00000508501 MOGSQ13724 837 aa10.93□□□□□ -0.66
LIMCH1-208ENST00000508501 BATFQ16520 125 aa10.93□□□□□ -0.66
LIMCH1-208ENST00000508501 ZNF792Q3KQV3 632 aa10.93□□□□□ -0.66
LIMCH1-208ENST00000508501 BMP8AQ7Z5Y6 402 aa10.93□□□□□ -0.66
LIMCH1-208ENST00000508501 PXKQ7Z7A4 578 aa10.93□□□□□ -0.66
LIMCH1-208ENST00000508501 GPAT4Q86UL3 456 aa10.93□□□□□ -0.66
LIMCH1-208ENST00000508501 TEX19Q8NA77 164 aa10.93□□□□□ -0.66
LIMCH1-208ENST00000508501 ATP6V1C2Q8NEY4 427 aa10.93□□□□□ -0.66
LIMCH1-208ENST00000508501 OR8J1Q8NGP2 316 aa10.93□□□□□ -0.66
LIMCH1-208ENST00000508501 PNPLA2Q96AD5 504 aa10.93□□□□□ -0.66
LIMCH1-208ENST00000508501 ACOT13Q9NPJ3 140 aa10.93□□□□□ -0.66
LIMCH1-208ENST00000508501 UBBP0CG47 229 aa10.93□□□□□ -0.66
LIMCH1-208ENST00000508501 UBCP0CG48 685 aaKnown RBP10.93□□□□□ -0.66
LIMCH1-208ENST00000508501 FECHP22830 423 aa10.93□□□□□ -0.66
LIMCH1-208ENST00000508501 ATXN7L3Q14CW9 347 aaPredicted RBP10.93□□□□□ -0.66
LIMCH1-208ENST00000508501 COQ5Q5HYK3 327 aa10.93□□□□□ -0.66
LIMCH1-208ENST00000508501 SMARCD3Q6STE5 483 aa10.93□□□□□ -0.66
LIMCH1-208ENST00000508501 NAPRTQ6XQN6 538 aa10.93□□□□□ -0.66
LIMCH1-208ENST00000508501 ZNF808Q8N4W9 903 aaPredicted RBP10.93□□□□□ -0.66
LIMCH1-208ENST00000508501 EXOSC8Q96B26 276 aaKnown RBP10.93□□□□□ -0.66
LIMCH1-208ENST00000508501 BIRC7Q96CA5 298 aa10.93□□□□□ -0.66
LIMCH1-208ENST00000508501 RBM18Q96H35 190 aaKnown RBP10.93□□□□□ -0.66
LIMCH1-208ENST00000508501 KCNC2Q96PR1 638 aa10.93□□□□□ -0.66
LIMCH1-208ENST00000508501 IL4I1Q96RQ9 567 aa10.93□□□□□ -0.66
LIMCH1-208ENST00000508501 AMBNQ9NP70 447 aa10.93□□□□□ -0.66
LIMCH1-208ENST00000508501 FAM230AA0A1W2PPH8 454 aa10.92□□□□□ -0.66
LIMCH1-208ENST00000508501 PRAMEF2O60811 474 aa10.92□□□□□ -0.66
LIMCH1-208ENST00000508501 CREG1O75629 220 aa10.92□□□□□ -0.66
LIMCH1-208ENST00000508501 TPPPO94811 219 aa10.92□□□□□ -0.66
LIMCH1-208ENST00000508501 ZDHHC11BP0C7U3 371 aa10.92□□□□□ -0.66
LIMCH1-208ENST00000508501 DHCR24Q15392 516 aa10.92□□□□□ -0.66
LIMCH1-208ENST00000508501 SLC35F1Q5T1Q4 408 aa10.92□□□□□ -0.66
LIMCH1-208ENST00000508501 HACD2Q6Y1H2 254 aa10.92□□□□□ -0.66
LIMCH1-208ENST00000508501 FAM156AQ8NDB6 213 aa10.92□□□□□ -0.66
LIMCH1-208ENST00000508501 AGBL3Q8NEM8 1001 aa10.92□□□□□ -0.66
LIMCH1-208ENST00000508501 OR8J3Q8NGG0 315 aa10.92□□□□□ -0.66
LIMCH1-208ENST00000508501 GNPDA2Q8TDQ7 276 aa10.92□□□□□ -0.66
LIMCH1-208ENST00000508501 ZNF514Q96K75 400 aaPredicted RBP10.92□□□□□ -0.66
LIMCH1-208ENST00000508501 RNF32Q9H0A6 362 aa10.92□□□□□ -0.66
LIMCH1-208ENST00000508501 CCM2LQ9NUG4 571 aaPredicted RBP10.92□□□□□ -0.66
LIMCH1-208ENST00000508501 CD300AQ9UGN4 299 aa10.92□□□□□ -0.66
LIMCH1-208ENST00000508501 CEMIPQ8WUJ3 1361 aa10.92□□□□□ -0.66
LIMCH1-208ENST00000508501 TRAV19A0A0A6YYK7 116 aa10.92□□□□□ -0.66
LIMCH1-208ENST00000508501 DCDC2CA8MYV0 355 aa10.92□□□□□ -0.66
LIMCH1-208ENST00000508501 B3GALNT1O75752 331 aa10.92□□□□□ -0.66
LIMCH1-208ENST00000508501 ARHGEF15O94989 841 aa10.92□□□□□ -0.66
LIMCH1-208ENST00000508501 MATN4O95460 622 aa10.92□□□□□ -0.66
LIMCH1-208ENST00000508501 HLA-EP13747 358 aa10.92□□□□□ -0.66
LIMCH1-208ENST00000508501 IDSP22304 550 aa10.92□□□□□ -0.66
LIMCH1-208ENST00000508501 RPS27AP62979 156 aaKnown RBP10.92□□□□□ -0.66
LIMCH1-208ENST00000508501 UBA52P62987 128 aaKnown RBP10.92□□□□□ -0.66
LIMCH1-208ENST00000508501 KCTD18Q6PI47 426 aaPredicted RBP10.92□□□□□ -0.66
LIMCH1-208ENST00000508501 KCNIP4Q6PIL6 250 aa10.92□□□□□ -0.66
LIMCH1-208ENST00000508501 EPGNQ6UW88 154 aa10.92□□□□□ -0.66
LIMCH1-208ENST00000508501 LCLAT1Q6UWP7 414 aa10.92□□□□□ -0.66
LIMCH1-208ENST00000508501 RASGRP3Q8IV61 690 aa10.92□□□□□ -0.66
LIMCH1-208ENST00000508501 C7orf57Q8NEG2 295 aa10.92□□□□□ -0.66
LIMCH1-208ENST00000508501 PROKR2Q8NFJ6 384 aa10.92□□□□□ -0.66
LIMCH1-208ENST00000508501 OR2T35Q8NGX2 323 aa10.92□□□□□ -0.66
LIMCH1-208ENST00000508501 ZNF578Q96N58 590 aaPredicted RBP10.92□□□□□ -0.66
LIMCH1-208ENST00000508501 TRBC2A0A5B9 178 aa10.92□□□□□ -0.66
LIMCH1-208ENST00000508501 LCHNA4D1U4 455 aa10.92□□□□□ -0.66
LIMCH1-208ENST00000508501 LATO43561 262 aa10.92□□□□□ -0.66
LIMCH1-208ENST00000508501 RAD51DO75771 328 aa10.92□□□□□ -0.66
LIMCH1-208ENST00000508501 CSNK2A2P19784 350 aaPredicted RBP10.92□□□□□ -0.66
LIMCH1-208ENST00000508501 OXTRP30559 389 aa10.92□□□□□ -0.66
LIMCH1-208ENST00000508501 RPS5P46782 204 aaKnown RBP10.92□□□□□ -0.66
LIMCH1-208ENST00000508501 POLR2HP52434 150 aaKnown RBP10.92□□□□□ -0.66
LIMCH1-208ENST00000508501 HTRA4P83105 476 aaPredicted RBP10.92□□□□□ -0.66
LIMCH1-208ENST00000508501 ST3GAL4Q11206 333 aa10.92□□□□□ -0.66
LIMCH1-208ENST00000508501 SF3A2Q15428 464 aaKnown RBP10.92□□□□□ -0.66
LIMCH1-208ENST00000508501 MEP1AQ16819 746 aa10.92□□□□□ -0.66
LIMCH1-208ENST00000508501 ZNF800Q2TB10 664 aaPredicted RBP eCLIP10.92□□□□□ -0.66
LIMCH1-208ENST00000508501 MYLK3Q32MK0 819 aa10.92□□□□□ -0.66
LIMCH1-208ENST00000508501 TRIM46Q7Z4K8 759 aa10.92□□□□□ -0.66
LIMCH1-208ENST00000508501 BTN2A3PQ96KV6 586 aa10.92□□□□□ -0.66
LIMCH1-208ENST00000508501 WDR6Q9NNW5 1121 aaKnown RBP10.92□□□□□ -0.66
LIMCH1-208ENST00000508501 EQTNQ9NQ60 294 aa10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms