RNA–Protein interactions for RNA: ENST00000501271.2

CLIP1-204, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,426 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-204ENST00000501271 PRLHRP49683 370 aa9.51□□□□□ -0.89
CLIP1-204ENST00000501271 C21orf59P57076 290 aa9.51□□□□□ -0.89
CLIP1-204ENST00000501271 KEAP1Q14145 624 aa9.51□□□□□ -0.89
CLIP1-204ENST00000501271 ARHGEF6Q15052 776 aa9.51□□□□□ -0.89
CLIP1-204ENST00000501271 CTF1Q16619 201 aa9.51□□□□□ -0.89
CLIP1-204ENST00000501271 IQCCQ4KMZ1 466 aa9.51□□□□□ -0.89
CLIP1-204ENST00000501271 GALNT18Q6P9A2 607 aa9.51□□□□□ -0.89
CLIP1-204ENST00000501271 TECPR1Q7Z6L1 1165 aa9.51□□□□□ -0.89
CLIP1-204ENST00000501271 CPA6Q8N4T0 437 aa9.51□□□□□ -0.89
CLIP1-204ENST00000501271 SLC15A4Q8N697 577 aa9.51□□□□□ -0.89
CLIP1-204ENST00000501271 SMYD1Q8NB12 490 aa9.51□□□□□ -0.89
CLIP1-204ENST00000501271 KLHL23Q8NBE8 558 aa9.51□□□□□ -0.89
CLIP1-204ENST00000501271 SETD9Q8NE22 299 aa9.51□□□□□ -0.89
CLIP1-204ENST00000501271 OR7G3Q8NG95 312 aa9.51□□□□□ -0.89
CLIP1-204ENST00000501271 HUS1BQ8NHY5 278 aa9.51□□□□□ -0.89
CLIP1-204ENST00000501271 GLMNQ92990 594 aa9.51□□□□□ -0.89
CLIP1-204ENST00000501271 GLYATL1Q969I3 302 aa9.51□□□□□ -0.89
CLIP1-204ENST00000501271 MAL2Q969L2 176 aa9.51□□□□□ -0.89
CLIP1-204ENST00000501271 TIFAQ96CG3 184 aa9.51□□□□□ -0.89
CLIP1-204ENST00000501271 TPD52L3Q96J77 140 aa9.51□□□□□ -0.89
CLIP1-204ENST00000501271 PLEKHA8Q96JA3 519 aa9.51□□□□□ -0.89
CLIP1-204ENST00000501271 RAD21L1Q9H4I0 556 aa9.51□□□□□ -0.89
CLIP1-204ENST00000501271 BRF2Q9HAW0 419 aa9.51□□□□□ -0.89
CLIP1-204ENST00000501271 TDP1Q9NUW8 608 aa9.51□□□□□ -0.89
CLIP1-204ENST00000501271 NFKBIL1Q9UBC1 381 aaPredicted RBP9.51□□□□□ -0.89
CLIP1-204ENST00000501271 FZD4Q9ULV1 537 aa9.51□□□□□ -0.89
CLIP1-204ENST00000501271 TDRKHQ9Y2W6 561 aaKnown RBP9.51□□□□□ -0.89
CLIP1-204ENST00000501271 SAMHD1Q9Y3Z3 626 aaKnown RBP9.51□□□□□ -0.89
CLIP1-204ENST00000501271 WNT6Q9Y6F9 365 aa9.51□□□□□ -0.89
CLIP1-204ENST00000501271 MYO7AQ13402 2215 aa9.51□□□□□ -0.89
CLIP1-204ENST00000501271 C5orf42Q9H799 3197 aa9.51□□□□□ -0.89
CLIP1-204ENST00000501271 ZNF99A8MXY4 864 aaPredicted RBP9.51□□□□□ -0.89
CLIP1-204ENST00000501271 ATG13O75143 517 aa9.51□□□□□ -0.89
CLIP1-204ENST00000501271 NDUFS2O75306 463 aa9.51□□□□□ -0.89
CLIP1-204ENST00000501271 ZBTB11O95625 1053 aaPredicted RBP9.51□□□□□ -0.89
CLIP1-204ENST00000501271 CATP04040 527 aaKnown RBP9.51□□□□□ -0.89
CLIP1-204ENST00000501271 ANXA4P09525 319 aaPredicted RBP9.51□□□□□ -0.89
CLIP1-204ENST00000501271 HSD3B1P14060 373 aa9.51□□□□□ -0.89
CLIP1-204ENST00000501271 POLR2EP19388 210 aaKnown RBP9.51□□□□□ -0.89
CLIP1-204ENST00000501271 HSD3B2P26439 372 aa9.51□□□□□ -0.89
CLIP1-204ENST00000501271 AQP1P29972 269 aa9.51□□□□□ -0.89
CLIP1-204ENST00000501271 WEE1P30291 646 aa9.51□□□□□ -0.89
CLIP1-204ENST00000501271 MAP2K4P45985 399 aa9.51□□□□□ -0.89
CLIP1-204ENST00000501271 ARHGDIAP52565 204 aa9.51□□□□□ -0.89
CLIP1-204ENST00000501271 ITGA1P56199 1179 aa9.51□□□□□ -0.89
CLIP1-204ENST00000501271 SLC35A2P78381 396 aa9.51□□□□□ -0.89
CLIP1-204ENST00000501271 GRIN2CQ14957 1233 aa9.51□□□□□ -0.89
CLIP1-204ENST00000501271 SMN1Q16637 294 aaKnown RBP9.51□□□□□ -0.89
CLIP1-204ENST00000501271 ZNF284Q2VY69 593 aa9.51□□□□□ -0.89
CLIP1-204ENST00000501271 LDLRAP1Q5SW96 308 aa9.51□□□□□ -0.89
CLIP1-204ENST00000501271 CPTPQ5TA50 214 aa9.51□□□□□ -0.89
CLIP1-204ENST00000501271 DPPA4Q7L190 304 aa9.51□□□□□ -0.89
CLIP1-204ENST00000501271 ANKRD13BQ86YJ7 626 aa9.51□□□□□ -0.89
CLIP1-204ENST00000501271 CCDC71Q8IV32 467 aaPredicted RBP9.51□□□□□ -0.89
CLIP1-204ENST00000501271 KLHDC8AQ8IYD2 350 aa9.51□□□□□ -0.89
CLIP1-204ENST00000501271 OR56A3Q8NH54 315 aa9.51□□□□□ -0.89
CLIP1-204ENST00000501271 ATL1Q8WXF7 558 aa9.51□□□□□ -0.89
CLIP1-204ENST00000501271 NEIL2Q969S2 332 aa9.51□□□□□ -0.89
CLIP1-204ENST00000501271 FAIMQ9NVQ4 179 aa9.51□□□□□ -0.89
CLIP1-204ENST00000501271 THUMPD1Q9NXG2 353 aaKnown RBP9.51□□□□□ -0.89
CLIP1-204ENST00000501271 GULP1Q9UBP9 304 aa9.51□□□□□ -0.89
CLIP1-204ENST00000501271 IL36AQ9UHA7 158 aa9.51□□□□□ -0.89
CLIP1-204ENST00000501271 SH2B3Q9UQQ2 575 aa9.51□□□□□ -0.89
CLIP1-204ENST00000501271 PCDHGB1Q9Y5G3 927 aa9.51□□□□□ -0.89
CLIP1-204ENST00000501271 GMPPBQ9Y5P6 360 aa9.51□□□□□ -0.89
CLIP1-204ENST00000501271 HIDE1A8MVS5 230 aa9.5□□□□□ -0.89
CLIP1-204ENST00000501271 TMEM229AB2RXF0 380 aa9.5□□□□□ -0.89
CLIP1-204ENST00000501271 JRKO75564 520 aa9.5□□□□□ -0.89
CLIP1-204ENST00000501271 MYO1DO94832 1006 aa9.5□□□□□ -0.89
CLIP1-204ENST00000501271 CLTBP09497 229 aa9.5□□□□□ -0.89
CLIP1-204ENST00000501271 JUNDP17535 347 aa9.5□□□□□ -0.89
CLIP1-204ENST00000501271 IDSP22304 550 aa9.5□□□□□ -0.89
CLIP1-204ENST00000501271 MMP12P39900 470 aa9.5□□□□□ -0.89
CLIP1-204ENST00000501271 MASP1P48740 699 aa9.5□□□□□ -0.89
CLIP1-204ENST00000501271 RPS13P62277 151 aaKnown RBP9.5□□□□□ -0.89
CLIP1-204ENST00000501271 KCNJ10P78508 379 aa9.5□□□□□ -0.89
CLIP1-204ENST00000501271 TMEM115Q12893 351 aaPredicted RBP9.5□□□□□ -0.89
CLIP1-204ENST00000501271 VEZF1Q14119 521 aa9.5□□□□□ -0.89
CLIP1-204ENST00000501271 DMC1Q14565 340 aa9.5□□□□□ -0.89
CLIP1-204ENST00000501271 ZNF77Q15935 545 aa9.5□□□□□ -0.89
CLIP1-204ENST00000501271 ZNF385BQ569K4 471 aa9.5□□□□□ -0.89
CLIP1-204ENST00000501271 DDX59Q5T1V6 619 aaKnown RBP eCLIP9.5□□□□□ -0.89
CLIP1-204ENST00000501271 PIWIL3Q7Z3Z3 882 aaKnown RBP9.5□□□□□ -0.89
CLIP1-204ENST00000501271 KIAA0907Q7Z7F0 614 aaPredicted RBP9.5□□□□□ -0.89
CLIP1-204ENST00000501271 TMPRSS11BQ86T26 416 aa9.5□□□□□ -0.89
CLIP1-204ENST00000501271 NPAS3Q8IXF0 933 aa9.5□□□□□ -0.89
CLIP1-204ENST00000501271 LMNTD1Q8N9Z9 388 aa9.5□□□□□ -0.89
CLIP1-204ENST00000501271 TTC29Q8NA56 475 aaPredicted RBP9.5□□□□□ -0.89
CLIP1-204ENST00000501271 ZFP90Q8TF47 636 aa9.5□□□□□ -0.89
CLIP1-204ENST00000501271 GIPC3Q8TF64 312 aa9.5□□□□□ -0.89
CLIP1-204ENST00000501271 CHTF18Q8WVB6 975 aa9.5□□□□□ -0.89
CLIP1-204ENST00000501271 SNRNP27Q8WVK2 155 aaKnown RBP9.5□□□□□ -0.89
CLIP1-204ENST00000501271 AP2M1Q96CW1 435 aa9.5□□□□□ -0.89
CLIP1-204ENST00000501271 C7orf34Q96L11 122 aa9.5□□□□□ -0.89
CLIP1-204ENST00000501271 VPS35Q96QK1 796 aa9.5□□□□□ -0.89
CLIP1-204ENST00000501271 CCM2Q9BSQ5 444 aa9.5□□□□□ -0.89
CLIP1-204ENST00000501271 DUSP21Q9H596 190 aa9.5□□□□□ -0.89
CLIP1-204ENST00000501271 PRM3Q9NNZ6 103 aa9.5□□□□□ -0.89
CLIP1-204ENST00000501271 KRT84Q9NSB2 600 aa9.5□□□□□ -0.89
CLIP1-204ENST00000501271 KIF17Q9P2E2 1029 aa9.5□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 119.1 ms