RNA–Protein interactions for RNA: ENST00000498056.1

CPNE1-227, Transcript of copine 1, humanhuman

TSL 2

Gene CPNE1, Length 362 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-227ENST00000498056 OR6C1Q96RD1 312 aa12.99□□□□□ -0.33
CPNE1-227ENST00000498056 CMKLR1Q99788 373 aa12.99□□□□□ -0.33
CPNE1-227ENST00000498056 SLC29A3Q9BZD2 475 aa12.99□□□□□ -0.33
CPNE1-227ENST00000498056 ELOVL6Q9H5J4 265 aa12.99□□□□□ -0.33
CPNE1-227ENST00000498056 SYNPO2LQ9H987 977 aa12.99□□□□□ -0.33
CPNE1-227ENST00000498056 OCIAD1Q9NX40 245 aa12.99□□□□□ -0.33
CPNE1-227ENST00000498056 SIDT1Q9NXL6 827 aaKnown RBP12.99□□□□□ -0.33
CPNE1-227ENST00000498056 SEMA5BQ9P283 1151 aa12.99□□□□□ -0.33
CPNE1-227ENST00000498056 PCDHGA4Q9Y5G9 962 aa12.99□□□□□ -0.33
CPNE1-227ENST00000498056 KCNE1BA0A087WTH5 132 aa12.98□□□□□ -0.33
CPNE1-227ENST00000498056 CCDC187A0A096LP49 1063 aa12.98□□□□□ -0.33
CPNE1-227ENST00000498056 TMEM233B4DJY2 109 aa12.98□□□□□ -0.33
CPNE1-227ENST00000498056 POLR3GO15318 223 aaPredicted RBP12.98□□□□□ -0.33
CPNE1-227ENST00000498056 HCRTR1O43613 425 aa12.98□□□□□ -0.33
CPNE1-227ENST00000498056 SKAP2O75563 359 aaPredicted RBP12.98□□□□□ -0.33
CPNE1-227ENST00000498056 WFS1O76024 890 aa12.98□□□□□ -0.33
CPNE1-227ENST00000498056 EIF2S1P05198 315 aaKnown RBP12.98□□□□□ -0.33
CPNE1-227ENST00000498056 SLC35G6P0C7Q6 338 aa12.98□□□□□ -0.33
CPNE1-227ENST00000498056 JMJD7P0C870 316 aa12.98□□□□□ -0.33
CPNE1-227ENST00000498056 FOLR1P15328 257 aa12.98□□□□□ -0.33
CPNE1-227ENST00000498056 ITIH1P19827 911 aa12.98□□□□□ -0.33
CPNE1-227ENST00000498056 SCTRP47872 440 aa12.98□□□□□ -0.33
CPNE1-227ENST00000498056 FOXA1P55317 472 aa12.98□□□□□ -0.33
CPNE1-227ENST00000498056 VSX2P58304 361 aaPredicted RBP12.98□□□□□ -0.33
CPNE1-227ENST00000498056 ACY1Q03154 408 aa12.98□□□□□ -0.33
CPNE1-227ENST00000498056 FOXC1Q12948 553 aa12.98□□□□□ -0.33
CPNE1-227ENST00000498056 IFT88Q13099 833 aa12.98□□□□□ -0.33
CPNE1-227ENST00000498056 COL9A2Q14055 689 aaPredicted RBP12.98□□□□□ -0.33
CPNE1-227ENST00000498056 SGO1Q5FBB7 561 aa12.98□□□□□ -0.33
CPNE1-227ENST00000498056 CYB5D1Q6P9G0 228 aa12.98□□□□□ -0.33
CPNE1-227ENST00000498056 FAM47EQ6ZV65 393 aa12.98□□□□□ -0.33
CPNE1-227ENST00000498056 RAB11FIP2Q7L804 512 aa12.98□□□□□ -0.33
CPNE1-227ENST00000498056 TMPRSS12Q86WS5 348 aa12.98□□□□□ -0.33
CPNE1-227ENST00000498056 MARCH9Q86YJ5 346 aa12.98□□□□□ -0.33
CPNE1-227ENST00000498056 GALNT15Q8N3T1 639 aa12.98□□□□□ -0.33
CPNE1-227ENST00000498056 CHCHD4Q8N4Q1 142 aa12.98□□□□□ -0.33
CPNE1-227ENST00000498056 CSNK1A1LQ8N752 337 aa12.98□□□□□ -0.33
CPNE1-227ENST00000498056 ANKRD53Q8N9V6 530 aa12.98□□□□□ -0.33
CPNE1-227ENST00000498056 MFSD9Q8NBP5 474 aa12.98□□□□□ -0.33
CPNE1-227ENST00000498056 ZCCHC10Q8TBK6 192 aa12.98□□□□□ -0.33
CPNE1-227ENST00000498056 ZNF75CPQ92670 426 aaPredicted RBP12.98□□□□□ -0.33
CPNE1-227ENST00000498056 UBE2E3Q969T4 207 aa12.98□□□□□ -0.33
CPNE1-227ENST00000498056 RNF31Q96EP0 1072 aa12.98□□□□□ -0.33
CPNE1-227ENST00000498056 HBEGFQ99075 208 aa12.98□□□□□ -0.33
CPNE1-227ENST00000498056 ZNF395Q9H8N7 513 aaPredicted RBP12.98□□□□□ -0.33
CPNE1-227ENST00000498056 TNFRSF12AQ9NP84 129 aa12.98□□□□□ -0.33
CPNE1-227ENST00000498056 FGF21Q9NSA1 209 aa12.98□□□□□ -0.33
CPNE1-227ENST00000498056 PISDQ9UG56 409 aa12.98□□□□□ -0.33
CPNE1-227ENST00000498056 ZNF225Q9UK10 706 aa12.98□□□□□ -0.33
CPNE1-227ENST00000498056 PILRAQ9UKJ1 303 aa12.98□□□□□ -0.33
CPNE1-227ENST00000498056 SNX6Q9UNH7 406 aa12.98□□□□□ -0.33
CPNE1-227ENST00000498056 PLCL2Q9UPR0 1127 aa12.98□□□□□ -0.33
CPNE1-227ENST00000498056 TIMM22Q9Y584 194 aa12.98□□□□□ -0.33
CPNE1-227ENST00000498056 KNTC1P50748 2209 aa12.97□□□□□ -0.33
CPNE1-227ENST00000498056 PMS2P1A4D2B8 440 aa12.97□□□□□ -0.33
CPNE1-227ENST00000498056 ANKDD1BA6NHY2 528 aa12.97□□□□□ -0.33
CPNE1-227ENST00000498056 H0YGG7 62 aa12.97□□□□□ -0.33
CPNE1-227ENST00000498056 KLF11O14901 512 aa12.97□□□□□ -0.33
CPNE1-227ENST00000498056 AZIN1O14977 448 aa12.97□□□□□ -0.33
CPNE1-227ENST00000498056 P2RX6O15547 441 aa12.97□□□□□ -0.33
CPNE1-227ENST00000498056 LCMT2O60294 686 aaKnown RBP12.97□□□□□ -0.33
CPNE1-227ENST00000498056 SNNO75324 88 aaPredicted RBP12.97□□□□□ -0.33
CPNE1-227ENST00000498056 CHEK2O96017 543 aa12.97□□□□□ -0.33
CPNE1-227ENST00000498056 KRT6AP02538 564 aa12.97□□□□□ -0.33
CPNE1-227ENST00000498056 KRT6BP04259 564 aa12.97□□□□□ -0.33
CPNE1-227ENST00000498056 CCL4P13236 92 aa12.97□□□□□ -0.33
CPNE1-227ENST00000498056 CASP2P42575 452 aa12.97□□□□□ -0.33
CPNE1-227ENST00000498056 KRT6CP48668 564 aa12.97□□□□□ -0.33
CPNE1-227ENST00000498056 HTR6P50406 440 aa12.97□□□□□ -0.33
CPNE1-227ENST00000498056 MAPK10P53779 464 aa12.97□□□□□ -0.33
CPNE1-227ENST00000498056 GYS2P54840 703 aa12.97□□□□□ -0.33
CPNE1-227ENST00000498056 ARF3P61204 181 aaPredicted RBP12.97□□□□□ -0.33
CPNE1-227ENST00000498056 PCDH1Q08174 1060 aa12.97□□□□□ -0.33
CPNE1-227ENST00000498056 GALNT1Q10472 559 aaPredicted RBP12.97□□□□□ -0.33
CPNE1-227ENST00000498056 TARDBPQ13148 414 aaKnown RBP eCLIP12.97□□□□□ -0.33
CPNE1-227ENST00000498056 E2F2Q14209 437 aa12.97□□□□□ -0.33
CPNE1-227ENST00000498056 FRG2Q64ET8 278 aa12.97□□□□□ -0.33
CPNE1-227ENST00000498056 ASPGQ86U10 573 aa12.97□□□□□ -0.33
CPNE1-227ENST00000498056 MCATQ8IVS2 390 aaKnown RBP12.97□□□□□ -0.33
CPNE1-227ENST00000498056 GPR135Q8IZ08 494 aa12.97□□□□□ -0.33
CPNE1-227ENST00000498056 DNAJC22Q8N4W6 341 aa12.97□□□□□ -0.33
CPNE1-227ENST00000498056 AFAP1L2Q8N4X5 818 aa12.97□□□□□ -0.33
CPNE1-227ENST00000498056 ZNF655Q8N720 491 aaPredicted RBP12.97□□□□□ -0.33
CPNE1-227ENST00000498056 ZNF781Q8N8C0 355 aa12.97□□□□□ -0.33
CPNE1-227ENST00000498056 TTLQ8NG68 377 aa12.97□□□□□ -0.33
CPNE1-227ENST00000498056 OR7G3Q8NG95 312 aa12.97□□□□□ -0.33
CPNE1-227ENST00000498056 METTL6Q8TCB7 284 aa12.97□□□□□ -0.33
CPNE1-227ENST00000498056 SELENOMQ8WWX9 145 aa12.97□□□□□ -0.33
CPNE1-227ENST00000498056 FRG2BQ96QU4 278 aa12.97□□□□□ -0.33
CPNE1-227ENST00000498056 SORT1Q99523 831 aa12.97□□□□□ -0.33
CPNE1-227ENST00000498056 MTERF1Q99551 399 aaKnown RBP12.97□□□□□ -0.33
CPNE1-227ENST00000498056 CTRCQ99895 268 aa12.97□□□□□ -0.33
CPNE1-227ENST00000498056 NLNQ9BYT8 704 aa12.97□□□□□ -0.33
CPNE1-227ENST00000498056 C20orf27Q9GZN8 174 aa12.97□□□□□ -0.33
CPNE1-227ENST00000498056 PITHD1Q9GZP4 211 aaPredicted RBP12.97□□□□□ -0.33
CPNE1-227ENST00000498056 THAP1Q9NVV9 213 aa12.97□□□□□ -0.33
CPNE1-227ENST00000498056 MARCOQ9UEW3 520 aaPredicted RBP12.97□□□□□ -0.33
CPNE1-227ENST00000498056 ZFP69BQ9UJL9 534 aa12.97□□□□□ -0.33
CPNE1-227ENST00000498056 RARRES3Q9UL19 164 aa12.97□□□□□ -0.33
CPNE1-227ENST00000498056 SATB2Q9UPW6 733 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms