RNA–Protein interactions for RNA: ENST00000493468.6

PRPF40A-211, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,043 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-211ENST00000493468 PLSCR2Q9NRY7 297 aa13.4□□□□□ -0.26
PRPF40A-211ENST00000493468 PIH1D1Q9NWS0 290 aaKnown RBP13.4□□□□□ -0.26
PRPF40A-211ENST00000493468 DNAJB12Q9NXW2 375 aaKnown RBP13.4□□□□□ -0.26
PRPF40A-211ENST00000493468 EDARQ9UNE0 448 aa13.4□□□□□ -0.26
PRPF40A-211ENST00000493468 HRH3Q9Y5N1 445 aa13.4□□□□□ -0.26
PRPF40A-211ENST00000493468 HRNRQ86YZ3 2850 aaPredicted RBP13.4□□□□□ -0.26
PRPF40A-211ENST00000493468 ZNF407Q9C0G0 2248 aa13.39□□□□□ -0.27
PRPF40A-211ENST00000493468 A0A1B0GTH9 108 aa13.39□□□□□ -0.27
PRPF40A-211ENST00000493468 GOLGA6L22H0YM25 854 aa13.39□□□□□ -0.27
PRPF40A-211ENST00000493468 TFECO14948 347 aaPredicted RBP13.39□□□□□ -0.27
PRPF40A-211ENST00000493468 CTAG2O75638 210 aa13.39□□□□□ -0.27
PRPF40A-211ENST00000493468 RPA3P35244 121 aaPredicted RBP13.39□□□□□ -0.27
PRPF40A-211ENST00000493468 XCR1P46094 333 aa13.39□□□□□ -0.27
PRPF40A-211ENST00000493468 PRDX1Q06830 199 aaKnown RBP13.39□□□□□ -0.27
PRPF40A-211ENST00000493468 CEBPEQ15744 281 aa13.39□□□□□ -0.27
PRPF40A-211ENST00000493468 MFSD4BQ5TF39 518 aa13.39□□□□□ -0.27
PRPF40A-211ENST00000493468 ICE2Q659A1 982 aa13.39□□□□□ -0.27
PRPF40A-211ENST00000493468 ACAD11Q709F0 780 aa13.39□□□□□ -0.27
PRPF40A-211ENST00000493468 ZNF227Q86WZ6 799 aa13.39□□□□□ -0.27
PRPF40A-211ENST00000493468 OR9A4Q8NGU2 314 aa13.39□□□□□ -0.27
PRPF40A-211ENST00000493468 MCOLN3Q8TDD5 553 aa13.39□□□□□ -0.27
PRPF40A-211ENST00000493468 SKA2Q8WVK7 121 aaPredicted RBP13.39□□□□□ -0.27
PRPF40A-211ENST00000493468 CHP1Q99653 195 aa13.39□□□□□ -0.27
PRPF40A-211ENST00000493468 LPAR4Q99677 370 aa13.39□□□□□ -0.27
PRPF40A-211ENST00000493468 OSBPL8Q9BZF1 889 aa13.39□□□□□ -0.27
PRPF40A-211ENST00000493468 ZNF358Q9NW07 568 aa13.39□□□□□ -0.27
PRPF40A-211ENST00000493468 SLC2A6Q9UGQ3 507 aa13.39□□□□□ -0.27
PRPF40A-211ENST00000493468 PCYOX1Q9UHG3 505 aa13.39□□□□□ -0.27
PRPF40A-211ENST00000493468 RUVBL2Q9Y230 463 aaKnown RBP13.39□□□□□ -0.27
PRPF40A-211ENST00000493468 KLF13Q9Y2Y9 288 aaPredicted RBP13.39□□□□□ -0.27
PRPF40A-211ENST00000493468 FAM237BA0A1B0GVD1 139 aa13.38□□□□□ -0.27
PRPF40A-211ENST00000493468 USP27XA6NNY8 438 aa13.38□□□□□ -0.27
PRPF40A-211ENST00000493468 ERI2A8K979 691 aaKnown RBP13.38□□□□□ -0.27
PRPF40A-211ENST00000493468 MYO1CO00159 1063 aa13.38□□□□□ -0.27
PRPF40A-211ENST00000493468 MATN4O95460 622 aa13.38□□□□□ -0.27
PRPF40A-211ENST00000493468 TFEBP19484 476 aa13.38□□□□□ -0.27
PRPF40A-211ENST00000493468 ATP5DP30049 168 aa13.38□□□□□ -0.27
PRPF40A-211ENST00000493468 TRHRP34981 398 aaPredicted RBP13.38□□□□□ -0.27
PRPF40A-211ENST00000493468 CTNNA1P35221 906 aaKnown RBP13.38□□□□□ -0.27
PRPF40A-211ENST00000493468 CYB561P49447 251 aa13.38□□□□□ -0.27
PRPF40A-211ENST00000493468 TTPAP49638 278 aa13.38□□□□□ -0.27
PRPF40A-211ENST00000493468 ST13P50502 369 aaKnown RBP13.38□□□□□ -0.27
PRPF40A-211ENST00000493468 LTBQ06643 244 aa13.38□□□□□ -0.27
PRPF40A-211ENST00000493468 CDH17Q12864 832 aa13.38□□□□□ -0.27
PRPF40A-211ENST00000493468 USP10Q14694 798 aaKnown RBP13.38□□□□□ -0.27
PRPF40A-211ENST00000493468 SFT2D3Q587I9 215 aa13.38□□□□□ -0.27
PRPF40A-211ENST00000493468 ZNF468Q5VIY5 522 aaPredicted RBP13.38□□□□□ -0.27
PRPF40A-211ENST00000493468 PTRHD1Q6GMV3 140 aaKnown RBP13.38□□□□□ -0.27
PRPF40A-211ENST00000493468 ARHGAP11AQ6P4F7 1023 aa13.38□□□□□ -0.27
PRPF40A-211ENST00000493468 OTOAQ7RTW8 1153 aa13.38□□□□□ -0.27
PRPF40A-211ENST00000493468 LUZP1Q86V48 1076 aa13.38□□□□□ -0.27
PRPF40A-211ENST00000493468 RPS19BP1Q86WX3 136 aaKnown RBP13.38□□□□□ -0.27
PRPF40A-211ENST00000493468 LRRC6Q86X45 466 aa13.38□□□□□ -0.27
PRPF40A-211ENST00000493468 PLPP5Q8NEB5 264 aa13.38□□□□□ -0.27
PRPF40A-211ENST00000493468 OR9A1PQ8NGU1 263 aa13.38□□□□□ -0.27
PRPF40A-211ENST00000493468 OR6P1Q8NGX9 317 aa13.38□□□□□ -0.27
PRPF40A-211ENST00000493468 OR51Q1Q8NH59 317 aa13.38□□□□□ -0.27
PRPF40A-211ENST00000493468 C16orf52Q8NHV5 167 aa13.38□□□□□ -0.27
PRPF40A-211ENST00000493468 ELP5Q8TE02 316 aa13.38□□□□□ -0.27
PRPF40A-211ENST00000493468 TMEM125Q96AQ2 219 aa13.38□□□□□ -0.27
PRPF40A-211ENST00000493468 MBD6Q96DN6 1003 aa13.38□□□□□ -0.27
PRPF40A-211ENST00000493468 SEC16BQ96JE7 1060 aa13.38□□□□□ -0.27
PRPF40A-211ENST00000493468 FAM118BQ9BPY3 351 aa13.38□□□□□ -0.27
PRPF40A-211ENST00000493468 P2RY12Q9H244 342 aa13.38□□□□□ -0.27
PRPF40A-211ENST00000493468 ABHD10Q9NUJ1 306 aa13.38□□□□□ -0.27
PRPF40A-211ENST00000493468 IFNKQ9P0W0 207 aa13.38□□□□□ -0.27
PRPF40A-211ENST00000493468 L3MBTL1Q9Y468 752 aa13.38□□□□□ -0.27
PRPF40A-211ENST00000493468 SCN3AQ9NY46 2000 aa13.38□□□□□ -0.27
PRPF40A-211ENST00000493468 ZNF839A8K0R7 811 aa13.37□□□□□ -0.27
PRPF40A-211ENST00000493468 NDC80O14777 642 aa13.37□□□□□ -0.27
PRPF40A-211ENST00000493468 KIF5CO60282 957 aa13.37□□□□□ -0.27
PRPF40A-211ENST00000493468 PRMT3O60678 531 aa13.37□□□□□ -0.27
PRPF40A-211ENST00000493468 GAS8O95995 478 aa13.37□□□□□ -0.27
PRPF40A-211ENST00000493468 RPS3P23396 243 aaKnown RBP eCLIP13.37□□□□□ -0.273e-6■□□□□ 11.1
PRPF40A-211ENST00000493468 DNASE1P24855 282 aa13.37□□□□□ -0.27
PRPF40A-211ENST00000493468 TPP2P29144 1249 aaPredicted RBP13.37□□□□□ -0.27
PRPF40A-211ENST00000493468 HSD17B2P37059 387 aa13.37□□□□□ -0.27
PRPF40A-211ENST00000493468 MEOX1P50221 254 aa13.37□□□□□ -0.27
PRPF40A-211ENST00000493468 SLC26A5P58743 744 aa13.37□□□□□ -0.27
PRPF40A-211ENST00000493468 SNRPNP63162 240 aaKnown RBP13.37□□□□□ -0.27
PRPF40A-211ENST00000493468 ADAM8P78325 824 aa13.37□□□□□ -0.27
PRPF40A-211ENST00000493468 PRAMEP78395 509 aa13.37□□□□□ -0.27
PRPF40A-211ENST00000493468 ABATP80404 500 aa13.37□□□□□ -0.27
PRPF40A-211ENST00000493468 GBX1Q14549 363 aa13.37□□□□□ -0.27
PRPF40A-211ENST00000493468 ANKRD20A4Q4UJ75 823 aa13.37□□□□□ -0.27
PRPF40A-211ENST00000493468 CMPK2Q5EBM0 449 aa13.37□□□□□ -0.27
PRPF40A-211ENST00000493468 EEF1AKMT2Q5JPI9 291 aaKnown RBP13.37□□□□□ -0.27
PRPF40A-211ENST00000493468 SUSD1Q6UWL2 747 aa13.37□□□□□ -0.27
PRPF40A-211ENST00000493468 CAMKMTQ7Z624 323 aa13.37□□□□□ -0.27
PRPF40A-211ENST00000493468 MPP5Q8N3R9 675 aa13.37□□□□□ -0.27
PRPF40A-211ENST00000493468 OR52K1Q8NGK4 314 aa13.37□□□□□ -0.27
PRPF40A-211ENST00000493468 RMND5BQ96G75 393 aaPredicted RBP13.37□□□□□ -0.27
PRPF40A-211ENST00000493468 EBNA1BP2Q99848 306 aaKnown RBP13.37□□□□□ -0.27
PRPF40A-211ENST00000493468 POLDIP3Q9BY77 421 aaKnown RBP13.37□□□□□ -0.27
PRPF40A-211ENST00000493468 CDCP1Q9H5V8 836 aa13.37□□□□□ -0.27
PRPF40A-211ENST00000493468 TAC3Q9UHF0 121 aa13.37□□□□□ -0.27
PRPF40A-211ENST00000493468 ANAPC5Q9UJX4 755 aa13.37□□□□□ -0.27
PRPF40A-211ENST00000493468 R3HDM2Q9Y2K5 976 aaKnown RBP13.37□□□□□ -0.27
PRPF40A-211ENST00000493468 JMJD1CQ15652 2540 aa13.37□□□□□ -0.27
PRPF40A-211ENST00000493468 MAGEB17A8MXT2 336 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms