RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 AHCYL1O43865 530 aa1.99□□□□□ -2.09
HMGB1-208ENST00000490788 MITFO75030 526 aaPredicted RBP1.99□□□□□ -2.09
HMGB1-208ENST00000490788 TBCAO75347 108 aaKnown RBP1.99□□□□□ -2.09
HMGB1-208ENST00000490788 MTRF1O75570 445 aaKnown RBP1.99□□□□□ -2.09
HMGB1-208ENST00000490788 STARD3NLO95772 234 aa1.99□□□□□ -2.09
HMGB1-208ENST00000490788 PAK4O96013 591 aaPredicted RBP1.99□□□□□ -2.09
HMGB1-208ENST00000490788 EDN1P05305 212 aa1.99□□□□□ -2.09
HMGB1-208ENST00000490788 HMBSP08397 361 aa1.99□□□□□ -2.09
HMGB1-208ENST00000490788 VIMP08670 466 aaKnown RBP1.99□□□□□ -2.09
HMGB1-208ENST00000490788 PRSS56P0CW18 603 aa1.99□□□□□ -2.09
HMGB1-208ENST00000490788 PNMA6AP0CW24 399 aaPredicted RBP1.99□□□□□ -2.09
HMGB1-208ENST00000490788 IGHV4-38-2P0DP08 117 aa1.99□□□□□ -2.09
HMGB1-208ENST00000490788 PRLRP16471 622 aa1.99□□□□□ -2.09
HMGB1-208ENST00000490788 GABRB1P18505 474 aa1.99□□□□□ -2.09
HMGB1-208ENST00000490788 NR1D1P20393 614 aa1.99□□□□□ -2.09
HMGB1-208ENST00000490788 SAT1P21673 171 aa1.99□□□□□ -2.09
HMGB1-208ENST00000490788 CBLP22681 906 aa1.99□□□□□ -2.09
HMGB1-208ENST00000490788 ITGA3P26006 1051 aa1.99□□□□□ -2.09
HMGB1-208ENST00000490788 OAS2P29728 719 aaKnown RBP1.99□□□□□ -2.09
HMGB1-208ENST00000490788 CCND3P30281 292 aaPredicted RBP1.99□□□□□ -2.09
HMGB1-208ENST00000490788 HOXC8P31273 242 aa1.99□□□□□ -2.09
HMGB1-208ENST00000490788 TCF7P36402 384 aaPredicted RBP1.99□□□□□ -2.09
HMGB1-208ENST00000490788 PSMB10P40306 273 aa1.99□□□□□ -2.09
HMGB1-208ENST00000490788 TUFMP49411 452 aaKnown RBP1.99□□□□□ -2.09
HMGB1-208ENST00000490788 VEGFCP49767 419 aa1.99□□□□□ -2.09
HMGB1-208ENST00000490788 HSD17B7P56937 341 aa1.99□□□□□ -2.09
HMGB1-208ENST00000490788 CTAG1AP78358 180 aa1.99□□□□□ -2.09
HMGB1-208ENST00000490788 BNIP1Q12981 228 aa1.99□□□□□ -2.09
HMGB1-208ENST00000490788 WTAPQ15007 396 aa1.99□□□□□ -2.09
HMGB1-208ENST00000490788 RASA2Q15283 850 aa1.99□□□□□ -2.09
HMGB1-208ENST00000490788 SHROOM1Q2M3G4 852 aaPredicted RBP1.99□□□□□ -2.09
HMGB1-208ENST00000490788 GTDC1Q4AE62 458 aa1.99□□□□□ -2.09
HMGB1-208ENST00000490788 CCDC152Q4G0S7 254 aa1.99□□□□□ -2.09
HMGB1-208ENST00000490788 FAM98BQ52LJ0 330 aaKnown RBP1.99□□□□□ -2.09
HMGB1-208ENST00000490788 ZC2HC1CQ53FD0 456 aaPredicted RBP1.99□□□□□ -2.09
HMGB1-208ENST00000490788 RILPL1Q5EBL4 403 aa1.99□□□□□ -2.09
HMGB1-208ENST00000490788 NAA16Q6N069 864 aaPredicted RBP1.99□□□□□ -2.09
HMGB1-208ENST00000490788 CAVIN1Q6NZI2 390 aaKnown RBP1.99□□□□□ -2.09
HMGB1-208ENST00000490788 UNC5DQ6UXZ4 953 aa1.99□□□□□ -2.09
HMGB1-208ENST00000490788 CFAP77Q6ZQR2 320 aa1.99□□□□□ -2.09
HMGB1-208ENST00000490788 DENND5BQ6ZUT9 1274 aa1.99□□□□□ -2.09
HMGB1-208ENST00000490788 INTS8Q75QN2 995 aaKnown RBP1.99□□□□□ -2.09
HMGB1-208ENST00000490788 ANO5Q75V66 913 aa1.99□□□□□ -2.09
HMGB1-208ENST00000490788 ATG9AQ7Z3C6 839 aa1.99□□□□□ -2.09
HMGB1-208ENST00000490788 ZNF554Q86TJ5 538 aa1.99□□□□□ -2.09
HMGB1-208ENST00000490788 ISCA2Q86U28 154 aa1.99□□□□□ -2.09
HMGB1-208ENST00000490788 SNX32Q86XE0 403 aa1.99□□□□□ -2.09
HMGB1-208ENST00000490788 PLD3Q8IV08 490 aa1.99□□□□□ -2.09
HMGB1-208ENST00000490788 TAGAPQ8N103 731 aa1.99□□□□□ -2.09
HMGB1-208ENST00000490788 ZNF713Q8N859 430 aaPredicted RBP1.99□□□□□ -2.09
HMGB1-208ENST00000490788 GBP7Q8N8V2 638 aaPredicted RBP1.99□□□□□ -2.09
HMGB1-208ENST00000490788 L3MBTL4Q8NA19 623 aa1.99□□□□□ -2.09
HMGB1-208ENST00000490788 ADAD2Q8NCV1 583 aaKnown RBP1.99□□□□□ -2.09
HMGB1-208ENST00000490788 OR2T12Q8NG77 320 aa1.99□□□□□ -2.09
HMGB1-208ENST00000490788 WDR20Q8TBZ3 569 aa1.99□□□□□ -2.09
HMGB1-208ENST00000490788 DAZLQ92904 295 aaKnown RBP1.99□□□□□ -2.09
HMGB1-208ENST00000490788 PPP1R14BQ96C90 147 aa1.99□□□□□ -2.09
HMGB1-208ENST00000490788 TBC1D31Q96DN5 1066 aa1.99□□□□□ -2.09
HMGB1-208ENST00000490788 SPDL1Q96EA4 605 aa1.99□□□□□ -2.09
HMGB1-208ENST00000490788 DTNBP1Q96EV8 351 aa1.99□□□□□ -2.09
HMGB1-208ENST00000490788 DHTKD1Q96HY7 919 aaPredicted RBP1.99□□□□□ -2.09
HMGB1-208ENST00000490788 CDHR1Q96JP9 859 aa1.99□□□□□ -2.09
HMGB1-208ENST00000490788 ALS2CR12Q96Q35 445 aa1.99□□□□□ -2.09
HMGB1-208ENST00000490788 IWS1Q96ST2 819 aa1.99□□□□□ -2.09
HMGB1-208ENST00000490788 GFI1Q99684 422 aa1.99□□□□□ -2.09
HMGB1-208ENST00000490788 SDF4Q9BRK5 362 aa1.99□□□□□ -2.09
HMGB1-208ENST00000490788 THUMPD2Q9BTF0 503 aaKnown RBP1.99□□□□□ -2.09
HMGB1-208ENST00000490788 NACAP1Q9BZK3 213 aa1.99□□□□□ -2.09
HMGB1-208ENST00000490788 YIPF3Q9GZM5 350 aa1.99□□□□□ -2.09
HMGB1-208ENST00000490788 DNAI2Q9GZS0 605 aa1.99□□□□□ -2.09
HMGB1-208ENST00000490788 FAM107BQ9H098 131 aa1.99□□□□□ -2.09
HMGB1-208ENST00000490788 DEFB129Q9H1M3 183 aa1.99□□□□□ -2.09
HMGB1-208ENST00000490788 VCX3BQ9H321 246 aa1.99□□□□□ -2.09
HMGB1-208ENST00000490788 OSGEPL1Q9H4B0 414 aa1.99□□□□□ -2.09
HMGB1-208ENST00000490788 MRGBPQ9NV56 204 aa1.99□□□□□ -2.09
HMGB1-208ENST00000490788 ARGLU1Q9NWB6 273 aaPredicted RBP1.99□□□□□ -2.09
HMGB1-208ENST00000490788 ZNHIT6Q9NWK9 470 aaKnown RBP1.99□□□□□ -2.09
HMGB1-208ENST00000490788 AATFQ9NY61 560 aaKnown RBP eCLIP1.99□□□□□ -2.09
HMGB1-208ENST00000490788 PSD3Q9NYI0 1048 aa1.99□□□□□ -2.09
HMGB1-208ENST00000490788 MIS18AQ9NYP9 233 aa1.99□□□□□ -2.09
HMGB1-208ENST00000490788 DNAJB4Q9UDY4 337 aa1.99□□□□□ -2.09
HMGB1-208ENST00000490788 ACAD8Q9UKU7 415 aa1.99□□□□□ -2.09
HMGB1-208ENST00000490788 PYCARDQ9ULZ3 195 aa1.99□□□□□ -2.09
HMGB1-208ENST00000490788 KCNJ14Q9UNX9 436 aa1.99□□□□□ -2.09
HMGB1-208ENST00000490788 SPIN1Q9Y657 262 aaPredicted RBP1.99□□□□□ -2.09
HMGB1-208ENST00000490788 BZW2Q9Y6E2 419 aaKnown RBP1.99□□□□□ -2.09
HMGB1-208ENST00000490788 MYO9BQ13459 2157 aa1.99□□□□□ -2.09
HMGB1-208ENST00000490788 NCAPD2Q15021 1401 aa1.99□□□□□ -2.09
HMGB1-208ENST00000490788 ASPMQ8IZT6 3477 aa1.98□□□□□ -2.09
HMGB1-208ENST00000490788 A0A1W2PP64 1363 aa1.98□□□□□ -2.09
HMGB1-208ENST00000490788 RTL9Q8NET4 1388 aa1.98□□□□□ -2.09
HMGB1-208ENST00000490788 HEG1Q9ULI3 1381 aa1.98□□□□□ -2.09
HMGB1-208ENST00000490788 MYO15AQ9UKN7 3530 aa1.98□□□□□ -2.09
HMGB1-208ENST00000490788 CNOT1A5YKK6 2376 aaKnown RBP1.98□□□□□ -2.09
HMGB1-208ENST00000490788 CACNA1HO95180 2353 aa1.98□□□□□ -2.09
HMGB1-208ENST00000490788 IGKV3D-15A0A087WSY6 115 aa1.98□□□□□ -2.09
HMGB1-208ENST00000490788 A0A1W2PRB8 838 aa1.98□□□□□ -2.09
HMGB1-208ENST00000490788 GOLGA6L4A6NEF3 574 aa1.98□□□□□ -2.09
HMGB1-208ENST00000490788 ANTXRLA6NF34 631 aa1.98□□□□□ -2.09
HMGB1-208ENST00000490788 C5orf60A6NFR6 353 aa1.98□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms