RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, human

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP4-213	ENST00000488520	CDH16	O75309	829 aa		8.4	□□□□□ -1.06
USP4-213	ENST00000488520	GPC4	O75487	556 aa		8.4	□□□□□ -1.06
USP4-213	ENST00000488520	SYF2	O95926	243 aa	Known RBP	8.4	□□□□□ -1.06
USP4-213	ENST00000488520	CAT	P04040	527 aa	Known RBP	8.4	□□□□□ -1.06
USP4-213	ENST00000488520	F7	P08709	466 aa	Predicted RBP	8.4	□□□□□ -1.06
USP4-213	ENST00000488520	CCDC166	P0CW27	439 aa		8.4	□□□□□ -1.06
USP4-213	ENST00000488520	BRAF	P15056	766 aa		8.4	□□□□□ -1.06
USP4-213	ENST00000488520	NELFE	P18615	380 aa	Known RBP	8.4	□□□□□ -1.06
USP4-213	ENST00000488520	FDXR	P22570	491 aa		8.4	□□□□□ -1.06
USP4-213	ENST00000488520	PTPN4	P29074	926 aa		8.4	□□□□□ -1.06
USP4-213	ENST00000488520	ATP5D	P30049	168 aa		8.4	□□□□□ -1.06
USP4-213	ENST00000488520	CAPZB	P47756	277 aa		8.4	□□□□□ -1.06
USP4-213	ENST00000488520	CLCN7	P51798	805 aa		8.4	□□□□□ -1.06
USP4-213	ENST00000488520	KPNA2	P52292	529 aa	Known RBP	8.4	□□□□□ -1.06
USP4-213	ENST00000488520	CDKN2D	P55273	166 aa		8.4	□□□□□ -1.06
USP4-213	ENST00000488520	TAS2R39	P59534	338 aa		8.4	□□□□□ -1.06
USP4-213	ENST00000488520	PRKAA1	Q13131	559 aa		8.4	□□□□□ -1.06
USP4-213	ENST00000488520	PRKG2	Q13237	762 aa		8.4	□□□□□ -1.06
USP4-213	ENST00000488520	RAPSN	Q13702	412 aa		8.4	□□□□□ -1.06
USP4-213	ENST00000488520	EFTUD2	Q15029	972 aa	Known RBP eCLIP	8.4	□□□□□ -1.06
USP4-213	ENST00000488520	FAM83E	Q2M2I3	478 aa		8.4	□□□□□ -1.06
USP4-213	ENST00000488520	ACSBG2	Q5FVE4	666 aa		8.4	□□□□□ -1.06
USP4-213	ENST00000488520	RBM20	Q5T481	1227 aa	Known RBP	8.4	□□□□□ -1.06
USP4-213	ENST00000488520	FAM69B	Q5VUD6	431 aa		8.4	□□□□□ -1.06
USP4-213	ENST00000488520	PAQR3	Q6TCH7	311 aa		8.4	□□□□□ -1.06
USP4-213	ENST00000488520	UNC5D	Q6UXZ4	953 aa		8.4	□□□□□ -1.06
USP4-213	ENST00000488520	FAM83H	Q6ZRV2	1179 aa	Predicted RBP	8.4	□□□□□ -1.06
USP4-213	ENST00000488520	NEK10	Q6ZWH5	1172 aa		8.4	□□□□□ -1.06
USP4-213	ENST00000488520	FRA10AC1	Q70Z53	315 aa		8.4	□□□□□ -1.06
USP4-213	ENST00000488520	HDX	Q7Z353	690 aa		8.4	□□□□□ -1.06
USP4-213	ENST00000488520	PRSS42	Q7Z5A4	293 aa		8.4	□□□□□ -1.06
USP4-213	ENST00000488520	TBC1D21	Q8IYX1	336 aa		8.4	□□□□□ -1.06
USP4-213	ENST00000488520	SLC22A15	Q8IZD6	547 aa		8.4	□□□□□ -1.06
USP4-213	ENST00000488520	RIBC1	Q8N443	379 aa	Predicted RBP	8.4	□□□□□ -1.06
USP4-213	ENST00000488520	MREG	Q8N565	214 aa		8.4	□□□□□ -1.06
USP4-213	ENST00000488520		Q8NA96	180 aa		8.4	□□□□□ -1.06
USP4-213	ENST00000488520	FDCSP	Q8NFU4	85 aa		8.4	□□□□□ -1.06
USP4-213	ENST00000488520	THAP4	Q8WY91	577 aa		8.4	□□□□□ -1.06
USP4-213	ENST00000488520	MR1	Q95460	341 aa		8.4	□□□□□ -1.06
USP4-213	ENST00000488520	RAD51AP1	Q96B01	352 aa		8.4	□□□□□ -1.06
USP4-213	ENST00000488520	LINGO1	Q96FE5	620 aa		8.4	□□□□□ -1.06
USP4-213	ENST00000488520	ZDHHC12	Q96GR4	267 aa		8.4	□□□□□ -1.06
USP4-213	ENST00000488520	TCTN2	Q96GX1	697 aa		8.4	□□□□□ -1.06
USP4-213	ENST00000488520	MAP3K3	Q99759	626 aa		8.4	□□□□□ -1.06
USP4-213	ENST00000488520	SLC29A3	Q9BZD2	475 aa		8.4	□□□□□ -1.06
USP4-213	ENST00000488520	STMN4	Q9H169	189 aa	Predicted RBP	8.4	□□□□□ -1.06
USP4-213	ENST00000488520	VPS11	Q9H270	941 aa		8.4	□□□□□ -1.06
USP4-213	ENST00000488520	ACBD3	Q9H3P7	528 aa		8.4	□□□□□ -1.06
USP4-213	ENST00000488520	UCK1	Q9HA47	277 aa		8.4	□□□□□ -1.06
USP4-213	ENST00000488520	NMRAL1	Q9HBL8	299 aa		8.4	□□□□□ -1.06
USP4-213	ENST00000488520	SLC40A1	Q9NP59	571 aa		8.4	□□□□□ -1.06
USP4-213	ENST00000488520	MLXIPL	Q9NP71	852 aa		8.4	□□□□□ -1.06
USP4-213	ENST00000488520	POT1	Q9NUX5	634 aa		8.4	□□□□□ -1.06
USP4-213	ENST00000488520	GALP	Q9UBC7	116 aa		8.4	□□□□□ -1.06
USP4-213	ENST00000488520	CTNNAL1	Q9UBT7	734 aa		8.4	□□□□□ -1.06
USP4-213	ENST00000488520	RUVBL2	Q9Y230	463 aa	Known RBP	8.4	□□□□□ -1.06
USP4-213	ENST00000488520	FARSA	Q9Y285	508 aa	Known RBP	8.4	□□□□□ -1.06
USP4-213	ENST00000488520	ZNF451	Q9Y4E5	1061 aa		8.4	□□□□□ -1.06
USP4-213	ENST00000488520	PCDHGA9	Q9Y5G4	932 aa	Known RBP	8.4	□□□□□ -1.06
USP4-213	ENST00000488520	CFAP20	Q9Y6A4	193 aa	Known RBP	8.4	□□□□□ -1.06
USP4-213	ENST00000488520	APC	P25054	2843 aa		8.39	□□□□□ -1.07
USP4-213	ENST00000488520	POLQ	O75417	2590 aa		8.39	□□□□□ -1.07
USP4-213	ENST00000488520	CSMD1	Q96PZ7	3565 aa		8.39	□□□□□ -1.07
USP4-213	ENST00000488520	C2CD3	Q4AC94	2353 aa		8.39	□□□□□ -1.07
USP4-213	ENST00000488520	UQCRHL	A0A096LP55	91 aa		8.39	□□□□□ -1.07
USP4-213	ENST00000488520	ZNF839	A8K0R7	811 aa		8.39	□□□□□ -1.07
USP4-213	ENST00000488520	TRIM49D1	C9J1S8	452 aa		8.39	□□□□□ -1.07
USP4-213	ENST00000488520	SLC16A5	O15375	505 aa		8.39	□□□□□ -1.07
USP4-213	ENST00000488520	RGS16	O15492	202 aa	Predicted RBP	8.39	□□□□□ -1.07
USP4-213	ENST00000488520	RECK	O95980	971 aa		8.39	□□□□□ -1.07
USP4-213	ENST00000488520	LDLR	P01130	860 aa		8.39	□□□□□ -1.07
USP4-213	ENST00000488520	S100B	P04271	92 aa	Predicted RBP	8.39	□□□□□ -1.07
USP4-213	ENST00000488520	C8G	P07360	202 aa		8.39	□□□□□ -1.07
USP4-213	ENST00000488520	UQCRH	P07919	91 aa		8.39	□□□□□ -1.07
USP4-213	ENST00000488520	NUDT17	P0C025	328 aa		8.39	□□□□□ -1.07
USP4-213	ENST00000488520	MTHFD1	P11586	935 aa	Known RBP	8.39	□□□□□ -1.07
USP4-213	ENST00000488520	HSD17B2	P37059	387 aa		8.39	□□□□□ -1.07
USP4-213	ENST00000488520	SLC26A3	P40879	764 aa		8.39	□□□□□ -1.07
USP4-213	ENST00000488520	SLCO1A2	P46721	670 aa		8.39	□□□□□ -1.07
USP4-213	ENST00000488520	CCT5	P48643	541 aa		8.39	□□□□□ -1.07
USP4-213	ENST00000488520	ARL4D	P49703	201 aa		8.39	□□□□□ -1.07
USP4-213	ENST00000488520	ATP6V0D1	P61421	351 aa		8.39	□□□□□ -1.07
USP4-213	ENST00000488520	BMPR2	Q13873	1038 aa		8.39	□□□□□ -1.07
USP4-213	ENST00000488520	KRT71	Q3SY84	523 aa		8.39	□□□□□ -1.07
USP4-213	ENST00000488520	SLC6A19	Q695T7	634 aa		8.39	□□□□□ -1.07
USP4-213	ENST00000488520	UBE2R2	Q712K3	238 aa	Predicted RBP	8.39	□□□□□ -1.07
USP4-213	ENST00000488520	SYVN1	Q86TM6	617 aa		8.39	□□□□□ -1.07
USP4-213	ENST00000488520	TMEM126B	Q8IUX1	230 aa		8.39	□□□□□ -1.07
USP4-213	ENST00000488520	GALNT12	Q8IXK2	581 aa		8.39	□□□□□ -1.07
USP4-213	ENST00000488520	CPNE9	Q8IYJ1	553 aa		8.39	□□□□□ -1.07
USP4-213	ENST00000488520	LILRA3	Q8N6C8	439 aa	Predicted RBP	8.39	□□□□□ -1.07
USP4-213	ENST00000488520	RBMXL3	Q8N7X1	1067 aa	Known RBP	8.39	□□□□□ -1.07
USP4-213	ENST00000488520	ACVR1C	Q8NER5	493 aa		8.39	□□□□□ -1.07
USP4-213	ENST00000488520	LKAAEAR1	Q8TD35	194 aa		8.39	□□□□□ -1.07
USP4-213	ENST00000488520	CD200R1	Q8TD46	325 aa		8.39	□□□□□ -1.07
USP4-213	ENST00000488520	DCAKD	Q8WVC6	231 aa		8.39	□□□□□ -1.07
USP4-213	ENST00000488520	LCN9	Q8WX39	176 aa		8.39	□□□□□ -1.07
USP4-213	ENST00000488520	PDLIM5	Q96HC4	596 aa	Known RBP	8.39	□□□□□ -1.07
USP4-213	ENST00000488520	SCYL1	Q96KG9	808 aa		8.39	□□□□□ -1.07
USP4-213	ENST00000488520	PKNOX2	Q96KN3	472 aa		8.39	□□□□□ -1.07

Retrieved 100 of 20,778 RNA–protein pairs in 60.2 ms