RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 STRADBQ9C0K7 418 aa11.72□□□□□ -0.53
SDC1-206ENST00000482879 TNFRSF12AQ9NP84 129 aa11.72□□□□□ -0.53
SDC1-206ENST00000482879 AKAP7Q9P0M2 348 aaPredicted RBP11.72□□□□□ -0.53
SDC1-206ENST00000482879 ZDHHC2Q9UIJ5 367 aa11.72□□□□□ -0.53
SDC1-206ENST00000482879 PLCL2Q9UPR0 1127 aa11.72□□□□□ -0.53
SDC1-206ENST00000482879 CLCA2Q9UQC9 943 aa11.72□□□□□ -0.53
SDC1-206ENST00000482879 EPB41L3Q9Y2J2 1087 aaPredicted RBP11.72□□□□□ -0.53
SDC1-206ENST00000482879 FIS1Q9Y3D6 152 aa11.72□□□□□ -0.53
SDC1-206ENST00000482879 RAP2CQ9Y3L5 183 aa11.72□□□□□ -0.53
SDC1-206ENST00000482879 TRAF6Q9Y4K3 522 aa11.72□□□□□ -0.53
SDC1-206ENST00000482879 TIMM22Q9Y584 194 aa11.72□□□□□ -0.53
SDC1-206ENST00000482879 PCDHGA11Q9Y5H2 935 aa11.72□□□□□ -0.53
SDC1-206ENST00000482879 SPTBN2O15020 2390 aa11.71□□□□□ -0.53
SDC1-206ENST00000482879 DMXL1Q9Y485 3027 aa11.71□□□□□ -0.53
SDC1-206ENST00000482879 ANKDD1BA6NHY2 528 aa11.71□□□□□ -0.53
SDC1-206ENST00000482879 TCP11X1B4DZS4 312 aa11.71□□□□□ -0.53
SDC1-206ENST00000482879 H0YGG7 62 aa11.71□□□□□ -0.53
SDC1-206ENST00000482879 H0YIV9 168 aa11.71□□□□□ -0.53
SDC1-206ENST00000482879 HGSO14964 777 aaPredicted RBP11.71□□□□□ -0.53
SDC1-206ENST00000482879 HCRTR1O43613 425 aa11.71□□□□□ -0.53
SDC1-206ENST00000482879 KRT6AP02538 564 aa11.71□□□□□ -0.53
SDC1-206ENST00000482879 KRT6BP04259 564 aa11.71□□□□□ -0.53
SDC1-206ENST00000482879 FGF4P08620 206 aa11.71□□□□□ -0.53
SDC1-206ENST00000482879 UROSP10746 265 aa11.71□□□□□ -0.53
SDC1-206ENST00000482879 FOLR1P15328 257 aa11.71□□□□□ -0.53
SDC1-206ENST00000482879 SERPINB3P29508 390 aa11.71□□□□□ -0.53
SDC1-206ENST00000482879 AHRP35869 848 aa11.71□□□□□ -0.53
SDC1-206ENST00000482879 KRT6CP48668 564 aa11.71□□□□□ -0.53
SDC1-206ENST00000482879 FOXA1P55317 472 aa11.71□□□□□ -0.53
SDC1-206ENST00000482879 VSX2P58304 361 aaPredicted RBP11.71□□□□□ -0.53
SDC1-206ENST00000482879 ARF3P61204 181 aaPredicted RBP11.71□□□□□ -0.53
SDC1-206ENST00000482879 IFT88Q13099 833 aa11.71□□□□□ -0.53
SDC1-206ENST00000482879 DEFB110Q30KQ9 67 aa11.71□□□□□ -0.53
SDC1-206ENST00000482879 SGO1Q5FBB7 561 aa11.71□□□□□ -0.53
SDC1-206ENST00000482879 FAM219BQ5XKK7 198 aa11.71□□□□□ -0.53
SDC1-206ENST00000482879 CLEC6AQ6EIG7 209 aa11.71□□□□□ -0.53
SDC1-206ENST00000482879 FRMPD2BQ6IN97 320 aa11.71□□□□□ -0.53
SDC1-206ENST00000482879 RGS9BPQ6ZS82 235 aa11.71□□□□□ -0.53
SDC1-206ENST00000482879 TMPRSS12Q86WS5 348 aa11.71□□□□□ -0.53
SDC1-206ENST00000482879 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP11.71□□□□□ -0.53
SDC1-206ENST00000482879 LAS2Q8IYD9 372 aa11.71□□□□□ -0.53
SDC1-206ENST00000482879 CLYBLQ8N0X4 340 aa11.71□□□□□ -0.53
SDC1-206ENST00000482879 ZNF781Q8N8C0 355 aa11.71□□□□□ -0.53
SDC1-206ENST00000482879 ANKRD53Q8N9V6 530 aa11.71□□□□□ -0.53
SDC1-206ENST00000482879 TTLQ8NG68 377 aa11.71□□□□□ -0.53
SDC1-206ENST00000482879 OR7G3Q8NG95 312 aa11.71□□□□□ -0.53
SDC1-206ENST00000482879 ADAMTS14Q8WXS8 1223 aa11.71□□□□□ -0.53
SDC1-206ENST00000482879 RERGQ96A58 199 aaPredicted RBP11.71□□□□□ -0.53
SDC1-206ENST00000482879 MTFMTQ96DP5 389 aaKnown RBP11.71□□□□□ -0.53
SDC1-206ENST00000482879 OR2A5Q96R48 311 aa11.71□□□□□ -0.53
SDC1-206ENST00000482879 ELOVL6Q9H5J4 265 aa11.71□□□□□ -0.53
SDC1-206ENST00000482879 SLCO1B3Q9NPD5 702 aa11.71□□□□□ -0.53
SDC1-206ENST00000482879 PNPOQ9NVS9 261 aa11.71□□□□□ -0.53
SDC1-206ENST00000482879 OCIAD1Q9NX40 245 aa11.71□□□□□ -0.53
SDC1-206ENST00000482879 DLL3Q9NYJ7 618 aa11.71□□□□□ -0.53
SDC1-206ENST00000482879 SNX6Q9UNH7 406 aa11.71□□□□□ -0.53
SDC1-206ENST00000482879 PCDHGA4Q9Y5G9 962 aa11.71□□□□□ -0.53
SDC1-206ENST00000482879 AP1M2Q9Y6Q5 423 aa11.71□□□□□ -0.53
SDC1-206ENST00000482879 SPTBN4Q9H254 2564 aa11.71□□□□□ -0.54
SDC1-206ENST00000482879 LOC105369274A0A096LPK9 316 aa11.7□□□□□ -0.54
SDC1-206ENST00000482879 LOC102723532A0A0G2JNH3 316 aa11.7□□□□□ -0.54
SDC1-206ENST00000482879 EFCAB7A8K855 629 aa11.7□□□□□ -0.54
SDC1-206ENST00000482879 TMEM233B4DJY2 109 aa11.7□□□□□ -0.54
SDC1-206ENST00000482879 TMEM150CB9EJG8 249 aa11.7□□□□□ -0.54
SDC1-206ENST00000482879 MANBAO00462 879 aa11.7□□□□□ -0.54
SDC1-206ENST00000482879 SRPX2O60687 465 aaPredicted RBP11.7□□□□□ -0.54
SDC1-206ENST00000482879 STATHP02808 62 aa11.7□□□□□ -0.54
SDC1-206ENST00000482879 EIF2S1P05198 315 aaKnown RBP11.7□□□□□ -0.54
SDC1-206ENST00000482879 SERPIND1P05546 499 aa11.7□□□□□ -0.54
SDC1-206ENST00000482879 GABRA4P48169 554 aa11.7□□□□□ -0.54
SDC1-206ENST00000482879 RPL14P50914 215 aaKnown RBP11.7□□□□□ -0.54
SDC1-206ENST00000482879 NEK2P51955 445 aa11.7□□□□□ -0.54
SDC1-206ENST00000482879 CYP4F2P78329 520 aa11.7□□□□□ -0.54
SDC1-206ENST00000482879 ACY1Q03154 408 aa11.7□□□□□ -0.54
SDC1-206ENST00000482879 FOXM1Q08050 763 aa11.7□□□□□ -0.54
SDC1-206ENST00000482879 DDX39BQ13838 428 aaKnown RBP11.7□□□□□ -0.54
SDC1-206ENST00000482879 GPR19Q15760 415 aa11.7□□□□□ -0.54
SDC1-206ENST00000482879 TCHHL1Q5QJ38 904 aaPredicted RBP11.7□□□□□ -0.54
SDC1-206ENST00000482879 KANK2Q63ZY3 851 aa11.7□□□□□ -0.54
SDC1-206ENST00000482879 FRG2Q64ET8 278 aa11.7□□□□□ -0.54
SDC1-206ENST00000482879 ADNP2Q6IQ32 1131 aa11.7□□□□□ -0.54
SDC1-206ENST00000482879 FAM47EQ6ZV65 393 aa11.7□□□□□ -0.54
SDC1-206ENST00000482879 CRLF3Q8IUI8 442 aa11.7□□□□□ -0.54
SDC1-206ENST00000482879 KIRREL3Q8IZU9 778 aa11.7□□□□□ -0.54
SDC1-206ENST00000482879 OR4N4Q8N0Y3 316 aa11.7□□□□□ -0.54
SDC1-206ENST00000482879 CACTIN-AS1Q8N1I8 211 aa11.7□□□□□ -0.54
SDC1-206ENST00000482879 AFAP1L2Q8N4X5 818 aa11.7□□□□□ -0.54
SDC1-206ENST00000482879 HUS1BQ8NHY5 278 aa11.7□□□□□ -0.54
SDC1-206ENST00000482879 SELENOMQ8WWX9 145 aa11.7□□□□□ -0.54
SDC1-206ENST00000482879 CCT6BQ92526 530 aa11.7□□□□□ -0.54
SDC1-206ENST00000482879 C7orf26Q96N11 449 aa11.7□□□□□ -0.54
SDC1-206ENST00000482879 FRG2BQ96QU4 278 aa11.7□□□□□ -0.54
SDC1-206ENST00000482879 CMKLR1Q99788 373 aa11.7□□□□□ -0.54
SDC1-206ENST00000482879 RHBGQ9H310 441 aa11.7□□□□□ -0.54
SDC1-206ENST00000482879 CCDC134Q9H6E4 229 aa11.7□□□□□ -0.54
SDC1-206ENST00000482879 SYNPO2LQ9H987 977 aa11.7□□□□□ -0.54
SDC1-206ENST00000482879 FANCEQ9HB96 536 aa11.7□□□□□ -0.54
SDC1-206ENST00000482879 FGF21Q9NSA1 209 aa11.7□□□□□ -0.54
SDC1-206ENST00000482879 IRAK4Q9NWZ3 460 aa11.7□□□□□ -0.54
SDC1-206ENST00000482879 ADGRE2Q9UHX3 823 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms