RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 MPP2Q14168 576 aa6.53□□□□□ -1.36
CCDC88A-213ENST00000476903 NCF4Q15080 339 aa6.53□□□□□ -1.36
CCDC88A-213ENST00000476903 ZIC1Q15915 447 aa6.53□□□□□ -1.36
CCDC88A-213ENST00000476903 CYP1B1Q16678 543 aa6.53□□□□□ -1.36
CCDC88A-213ENST00000476903 TYSND1Q2T9J0 566 aa6.53□□□□□ -1.36
CCDC88A-213ENST00000476903 DEFB110Q30KQ9 67 aa6.53□□□□□ -1.36
CCDC88A-213ENST00000476903 PTCHD3Q3KNS1 767 aa6.53□□□□□ -1.36
CCDC88A-213ENST00000476903 CTSL3PQ5NE16 218 aa6.53□□□□□ -1.36
CCDC88A-213ENST00000476903 KIAA0930Q6ICG6 404 aaPredicted RBP6.53□□□□□ -1.36
CCDC88A-213ENST00000476903 LCN10Q6JVE6 187 aa6.53□□□□□ -1.36
CCDC88A-213ENST00000476903 RHBDD2Q6NTF9 364 aa6.53□□□□□ -1.36
CCDC88A-213ENST00000476903 TCTN3Q6NUS6 607 aa6.53□□□□□ -1.36
CCDC88A-213ENST00000476903 TTC27Q6P3X3 843 aa6.53□□□□□ -1.36
CCDC88A-213ENST00000476903 TLDC1Q6P9B6 456 aa6.53□□□□□ -1.36
CCDC88A-213ENST00000476903 CCDC137Q6PK04 289 aaKnown RBP6.53□□□□□ -1.36
CCDC88A-213ENST00000476903 PAQR3Q6TCH7 311 aa6.53□□□□□ -1.36
CCDC88A-213ENST00000476903 FAM198BQ6UWH4 519 aa6.53□□□□□ -1.36
CCDC88A-213ENST00000476903 CES3Q6UWW8 571 aa6.53□□□□□ -1.36
CCDC88A-213ENST00000476903 Q8N1X5 172 aa6.53□□□□□ -1.36
CCDC88A-213ENST00000476903 DNAJC22Q8N4W6 341 aa6.53□□□□□ -1.36
CCDC88A-213ENST00000476903 ENDOVQ8N8Q3 282 aaKnown RBP6.53□□□□□ -1.36
CCDC88A-213ENST00000476903 LINC01555Q8NAE3 123 aa6.53□□□□□ -1.36
CCDC88A-213ENST00000476903 MCUQ8NE86 351 aa6.53□□□□□ -1.36
CCDC88A-213ENST00000476903 OR2L8Q8NGY9 312 aa6.53□□□□□ -1.36
CCDC88A-213ENST00000476903 PROKR1Q8TCW9 393 aa6.53□□□□□ -1.36
CCDC88A-213ENST00000476903 MAGEC3Q8TD91 643 aa6.53□□□□□ -1.36
CCDC88A-213ENST00000476903 GRK7Q8WTQ7 553 aa6.53□□□□□ -1.36
CCDC88A-213ENST00000476903 LPGAT1Q92604 370 aa6.53□□□□□ -1.36
CCDC88A-213ENST00000476903 MS4A14Q96JA4 679 aa6.53□□□□□ -1.36
CCDC88A-213ENST00000476903 FOPNLQ96NB1 174 aa6.53□□□□□ -1.36
CCDC88A-213ENST00000476903 BIRC8Q96P09 236 aa6.53□□□□□ -1.36
CCDC88A-213ENST00000476903 DHRS4Q9BTZ2 278 aa6.53□□□□□ -1.36
CCDC88A-213ENST00000476903 MENTQ9BUN1 341 aa6.53□□□□□ -1.36
CCDC88A-213ENST00000476903 CDADC1Q9BWV3 514 aa6.53□□□□□ -1.36
CCDC88A-213ENST00000476903 TRIM4Q9C037 500 aa6.53□□□□□ -1.36
CCDC88A-213ENST00000476903 GRPEL1Q9HAV7 217 aa6.53□□□□□ -1.36
CCDC88A-213ENST00000476903 XAB2Q9HCS7 855 aaKnown RBP6.53□□□□□ -1.36
CCDC88A-213ENST00000476903 FAM60AQ9NP50 221 aa6.53□□□□□ -1.36
CCDC88A-213ENST00000476903 ACSS2Q9NR19 701 aa6.53□□□□□ -1.36
CCDC88A-213ENST00000476903 INTS7Q9NVH2 962 aaKnown RBP6.53□□□□□ -1.36
CCDC88A-213ENST00000476903 IRAK4Q9NWZ3 460 aa6.53□□□□□ -1.36
CCDC88A-213ENST00000476903 CAMSAP3Q9P1Y5 1249 aaPredicted RBP6.53□□□□□ -1.36
CCDC88A-213ENST00000476903 TLK1Q9UKI8 766 aa6.53□□□□□ -1.36
CCDC88A-213ENST00000476903 SRPK3Q9UPE1 567 aa6.53□□□□□ -1.36
CCDC88A-213ENST00000476903 PLCL2Q9UPR0 1127 aa6.53□□□□□ -1.36
CCDC88A-213ENST00000476903 TP53TG5Q9Y2B4 290 aa6.53□□□□□ -1.36
CCDC88A-213ENST00000476903 TENM4Q6N022 2769 aa6.52□□□□□ -1.37
CCDC88A-213ENST00000476903 FAM237BA0A1B0GVD1 139 aa6.52□□□□□ -1.37
CCDC88A-213ENST00000476903 MAGEB16A2A368 324 aa6.52□□□□□ -1.37
CCDC88A-213ENST00000476903 SDR42E2A6NKP2 422 aa6.52□□□□□ -1.37
CCDC88A-213ENST00000476903 GOLGA8KD6RF30 607 aa6.52□□□□□ -1.37
CCDC88A-213ENST00000476903 E5RI56 91 aa6.52□□□□□ -1.37
CCDC88A-213ENST00000476903 H3BMH7 237 aa6.52□□□□□ -1.37
CCDC88A-213ENST00000476903 GOLGA8TH3BQL2 631 aa6.52□□□□□ -1.37
CCDC88A-213ENST00000476903 CES2O00748 559 aa6.52□□□□□ -1.37
CCDC88A-213ENST00000476903 HCRTR1O43613 425 aa6.52□□□□□ -1.37
CCDC88A-213ENST00000476903 KIF5CO60282 957 aa6.52□□□□□ -1.37
CCDC88A-213ENST00000476903 PHF2O75151 1096 aa6.52□□□□□ -1.37
CCDC88A-213ENST00000476903 AVILO75366 819 aa6.52□□□□□ -1.37
CCDC88A-213ENST00000476903 DNAJB5O75953 348 aa6.52□□□□□ -1.37
CCDC88A-213ENST00000476903 TMEM63AO94886 807 aa6.52□□□□□ -1.37
CCDC88A-213ENST00000476903 FKBP9O95302 570 aa6.52□□□□□ -1.37
CCDC88A-213ENST00000476903 C1orf105O95561 183 aa6.52□□□□□ -1.37
CCDC88A-213ENST00000476903 SLPIP03973 132 aa6.52□□□□□ -1.37
CCDC88A-213ENST00000476903 CD63P08962 238 aa6.52□□□□□ -1.37
CCDC88A-213ENST00000476903 ZNF16P17020 682 aaPredicted RBP6.52□□□□□ -1.37
CCDC88A-213ENST00000476903 CHRM3P20309 590 aa6.52□□□□□ -1.37
CCDC88A-213ENST00000476903 MAGP20916 626 aa6.52□□□□□ -1.37
CCDC88A-213ENST00000476903 ENDOUP21128 410 aaKnown RBP6.52□□□□□ -1.37
CCDC88A-213ENST00000476903 BDKRB1P46663 353 aa6.52□□□□□ -1.37
CCDC88A-213ENST00000476903 GABRA4P48169 554 aa6.52□□□□□ -1.37
CCDC88A-213ENST00000476903 FNTAP49354 379 aa6.52□□□□□ -1.37
CCDC88A-213ENST00000476903 THOC5Q13769 683 aaKnown RBP6.52□□□□□ -1.37
CCDC88A-213ENST00000476903 DHX34Q14147 1143 aaKnown RBP6.52□□□□□ -1.37
CCDC88A-213ENST00000476903 GRB7Q14451 532 aa6.52□□□□□ -1.37
CCDC88A-213ENST00000476903 GBX1Q14549 363 aa6.52□□□□□ -1.37
CCDC88A-213ENST00000476903 NAA25Q14CX7 972 aa6.52□□□□□ -1.37
CCDC88A-213ENST00000476903 SF1Q15637 639 aaKnown RBP6.52□□□□□ -1.37
CCDC88A-213ENST00000476903 KCTD19Q17RG1 926 aaPredicted RBP6.52□□□□□ -1.37
CCDC88A-213ENST00000476903 ZC3H12BQ5HYM0 836 aaKnown RBP6.52□□□□□ -1.37
CCDC88A-213ENST00000476903 C1orf189Q5VU69 101 aa6.52□□□□□ -1.37
CCDC88A-213ENST00000476903 ANKRD22Q5VYY1 191 aa6.52□□□□□ -1.37
CCDC88A-213ENST00000476903 ZNF470Q6ECI4 717 aa6.52□□□□□ -1.37
CCDC88A-213ENST00000476903 NEPROQ6NW34 567 aa6.52□□□□□ -1.37
CCDC88A-213ENST00000476903 CNSTQ6PJW8 725 aa6.52□□□□□ -1.37
CCDC88A-213ENST00000476903 ASB18Q6ZVZ8 466 aa6.52□□□□□ -1.37
CCDC88A-213ENST00000476903 TAX1BP1Q86VP1 789 aa6.52□□□□□ -1.37
CCDC88A-213ENST00000476903 CAND1Q86VP6 1230 aaKnown RBP6.52□□□□□ -1.37
CCDC88A-213ENST00000476903 RAB43Q86YS6 212 aa6.52□□□□□ -1.37
CCDC88A-213ENST00000476903 SLC35F6Q8N357 371 aa6.52□□□□□ -1.37
CCDC88A-213ENST00000476903 C2orf73Q8N5S3 287 aaPredicted RBP6.52□□□□□ -1.37
CCDC88A-213ENST00000476903 GPATCH11Q8N954 259 aa6.52□□□□□ -1.37
CCDC88A-213ENST00000476903 ACTRT1Q8TDG2 376 aa6.52□□□□□ -1.37
CCDC88A-213ENST00000476903 ADAMTS17Q8TE56 1095 aa6.52□□□□□ -1.37
CCDC88A-213ENST00000476903 DENND1AQ8TEH3 1009 aa6.52□□□□□ -1.37
CCDC88A-213ENST00000476903 COG1Q8WTW3 980 aa6.52□□□□□ -1.37
CCDC88A-213ENST00000476903 DLG3Q92796 817 aa6.52□□□□□ -1.37
CCDC88A-213ENST00000476903 RAD51AP1Q96B01 352 aa6.52□□□□□ -1.37
CCDC88A-213ENST00000476903 ZNF669Q96BR6 464 aaPredicted RBP6.52□□□□□ -1.37
CCDC88A-213ENST00000476903 SERPINB12Q96P63 405 aa6.52□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms