RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 FAAH2Q6GMR7 532 aa13.37□□□□□ -0.27
UPF3A-204ENST00000475218 TMEM205Q6UW68 189 aa13.37□□□□□ -0.27
UPF3A-204ENST00000475218 PDSS2Q86YH6 399 aa13.37□□□□□ -0.27
UPF3A-204ENST00000475218 IQCKQ8N0W5 287 aa13.37□□□□□ -0.27
UPF3A-204ENST00000475218 KCT2Q8NC54 265 aa13.37□□□□□ -0.27
UPF3A-204ENST00000475218 SNF8Q96H20 258 aa13.37□□□□□ -0.27
UPF3A-204ENST00000475218 THOC3Q96J01 351 aaKnown RBP13.37□□□□□ -0.27
UPF3A-204ENST00000475218 SPNS1Q9H2V7 528 aa13.37□□□□□ -0.27
UPF3A-204ENST00000475218 MKKSQ9NPJ1 570 aaPredicted RBP13.37□□□□□ -0.27
UPF3A-204ENST00000475218 PPANQ9NQ55 473 aaKnown RBP13.37□□□□□ -0.27
UPF3A-204ENST00000475218 UTP6Q9NYH9 597 aaKnown RBP13.37□□□□□ -0.27
UPF3A-204ENST00000475218 NOVA2Q9UNW9 492 aaKnown RBP13.37□□□□□ -0.27
UPF3A-204ENST00000475218 ICE1Q9Y2F5 2266 aa13.36□□□□□ -0.27
UPF3A-204ENST00000475218 BLACEA4D250 179 aa13.36□□□□□ -0.27
UPF3A-204ENST00000475218 OR2W5A6NFC9 320 aa13.36□□□□□ -0.27
UPF3A-204ENST00000475218 CCDC188H7C350 402 aa13.36□□□□□ -0.27
UPF3A-204ENST00000475218 BMP10O95393 424 aa13.36□□□□□ -0.27
UPF3A-204ENST00000475218 CBX6O95503 412 aa13.36□□□□□ -0.27
UPF3A-204ENST00000475218 HRH2P25021 359 aa13.36□□□□□ -0.27
UPF3A-204ENST00000475218 IL2P60568 153 aa13.36□□□□□ -0.27
UPF3A-204ENST00000475218 RPS15AP62244 130 aaKnown RBP13.36□□□□□ -0.27
UPF3A-204ENST00000475218 EEF1A2Q05639 463 aaKnown RBP13.36□□□□□ -0.27
UPF3A-204ENST00000475218 PCOLCEQ15113 449 aa13.36□□□□□ -0.27
UPF3A-204ENST00000475218 EIF2S3LQ2VIR3 472 aaKnown RBP13.36□□□□□ -0.27
UPF3A-204ENST00000475218 AGAP7PQ5VUJ5 663 aa13.36□□□□□ -0.27
UPF3A-204ENST00000475218 LCTLQ6UWM7 567 aa13.36□□□□□ -0.27
UPF3A-204ENST00000475218 ZC3HC1Q86WB0 502 aaKnown RBP13.36□□□□□ -0.27
UPF3A-204ENST00000475218 ZADH2Q8N4Q0 377 aa13.36□□□□□ -0.27
UPF3A-204ENST00000475218 FBXO36Q8NEA4 188 aa13.36□□□□□ -0.27
UPF3A-204ENST00000475218 ABHD11Q8NFV4 315 aa13.36□□□□□ -0.27
UPF3A-204ENST00000475218 OR4K1Q8NGD4 311 aa13.36□□□□□ -0.27
UPF3A-204ENST00000475218 PPP4R1Q8TF05 950 aa13.36□□□□□ -0.27
UPF3A-204ENST00000475218 MOCOSQ96EN8 888 aa13.36□□□□□ -0.27
UPF3A-204ENST00000475218 PDLIM5Q96HC4 596 aaKnown RBP13.36□□□□□ -0.27
UPF3A-204ENST00000475218 AGAP4Q96P64 663 aa13.36□□□□□ -0.27
UPF3A-204ENST00000475218 KRT12Q99456 494 aa13.36□□□□□ -0.27
UPF3A-204ENST00000475218 WDR77Q9BQA1 342 aaPredicted RBP13.36□□□□□ -0.27
UPF3A-204ENST00000475218 PCBD2Q9H0N5 130 aa13.36□□□□□ -0.27
UPF3A-204ENST00000475218 C14orf105Q9NVL8 296 aa13.36□□□□□ -0.27
UPF3A-204ENST00000475218 CORO1CQ9ULV4 474 aaPredicted RBP13.36□□□□□ -0.27
UPF3A-204ENST00000475218 SNX24Q9Y343 169 aa13.36□□□□□ -0.27
UPF3A-204ENST00000475218 TXNDC9O14530 226 aa13.35□□□□□ -0.27
UPF3A-204ENST00000475218 MAP2K7O14733 419 aa13.35□□□□□ -0.27
UPF3A-204ENST00000475218 DNAJB6O75190 326 aa13.35□□□□□ -0.27
UPF3A-204ENST00000475218 PRR35P0CG20 571 aa13.35□□□□□ -0.27
UPF3A-204ENST00000475218 ZNF37AP17032 561 aaPredicted RBP13.35□□□□□ -0.27
UPF3A-204ENST00000475218 IL1RNP18510 177 aa13.35□□□□□ -0.27
UPF3A-204ENST00000475218 SOX11P35716 441 aa13.35□□□□□ -0.27
UPF3A-204ENST00000475218 ARL4CP56559 192 aa13.35□□□□□ -0.27
UPF3A-204ENST00000475218 MEF2AQ02078 507 aaPredicted RBP13.35□□□□□ -0.27
UPF3A-204ENST00000475218 MGAT5Q09328 741 aa13.35□□□□□ -0.27
UPF3A-204ENST00000475218 PDIA2Q13087 525 aaKnown RBP13.35□□□□□ -0.27
UPF3A-204ENST00000475218 PDAP1Q13442 181 aaKnown RBP13.35□□□□□ -0.27
UPF3A-204ENST00000475218 FAM45BPQ6NSW5 357 aa13.35□□□□□ -0.27
UPF3A-204ENST00000475218 SLC26A11Q86WA9 606 aa13.35□□□□□ -0.27
UPF3A-204ENST00000475218 C17orf64Q86WR6 236 aa13.35□□□□□ -0.27
UPF3A-204ENST00000475218 ZNF740Q8NDX6 193 aa13.35□□□□□ -0.27
UPF3A-204ENST00000475218 CATSPER1Q8NEC5 780 aa13.35□□□□□ -0.27
UPF3A-204ENST00000475218 FAM45AQ8TCE6 357 aa13.35□□□□□ -0.27
UPF3A-204ENST00000475218 ANKRD49Q8WVL7 239 aa13.35□□□□□ -0.27
UPF3A-204ENST00000475218 ALKBH8Q96BT7 664 aaKnown RBP13.35□□□□□ -0.27
UPF3A-204ENST00000475218 FBXL8Q96CD0 374 aa13.35□□□□□ -0.27
UPF3A-204ENST00000475218 RUNDC3BQ96NL0 473 aa13.35□□□□□ -0.27
UPF3A-204ENST00000475218 SARGQ9BW04 601 aa13.35□□□□□ -0.27
UPF3A-204ENST00000475218 VN1R1Q9GZP7 353 aa13.35□□□□□ -0.27
UPF3A-204ENST00000475218 ILKAPQ9H0C8 392 aaPredicted RBP13.35□□□□□ -0.27
UPF3A-204ENST00000475218 CRYBG3Q68DQ2 2970 aa13.35□□□□□ -0.27
UPF3A-204ENST00000475218 SPTBN1Q01082 2364 aaKnown RBP13.35□□□□□ -0.27
UPF3A-204ENST00000475218 EFCAB8A8MWE9 144 aa13.35□□□□□ -0.27
UPF3A-204ENST00000475218 H0YIG0 161 aa13.35□□□□□ -0.27
UPF3A-204ENST00000475218 SGK494L7N484 410 aa13.35□□□□□ -0.27
UPF3A-204ENST00000475218 CDC7O00311 574 aa13.35□□□□□ -0.27
UPF3A-204ENST00000475218 PRPF4O43172 522 aaKnown RBP eCLIP13.35□□□□□ -0.27
UPF3A-204ENST00000475218 KLHL41O60662 606 aa13.35□□□□□ -0.27
UPF3A-204ENST00000475218 WISP3O95389 354 aaPredicted RBP13.35□□□□□ -0.27
UPF3A-204ENST00000475218 NSA2O95478 260 aaKnown RBP13.35□□□□□ -0.27
UPF3A-204ENST00000475218 C1QAP02745 245 aa13.35□□□□□ -0.27
UPF3A-204ENST00000475218 TAS2R39P59534 338 aa13.35□□□□□ -0.27
UPF3A-204ENST00000475218 MFAP5Q13361 173 aa13.35□□□□□ -0.27
UPF3A-204ENST00000475218 NR6A1Q15406 480 aa13.35□□□□□ -0.27
UPF3A-204ENST00000475218 CATSPEREQ5SY80 951 aa13.35□□□□□ -0.27
UPF3A-204ENST00000475218 DUPD1Q68J44 220 aa13.35□□□□□ -0.27
UPF3A-204ENST00000475218 LINC00696Q6ZRV3 163 aa13.35□□□□□ -0.27
UPF3A-204ENST00000475218 NDUFAF7Q7L592 441 aa13.35□□□□□ -0.27
UPF3A-204ENST00000475218 CEP97Q8IW35 865 aa13.35□□□□□ -0.27
UPF3A-204ENST00000475218 C17orf53Q8N3J3 647 aaPredicted RBP13.35□□□□□ -0.27
UPF3A-204ENST00000475218 TM9SF4Q92544 642 aa13.35□□□□□ -0.27
UPF3A-204ENST00000475218 THAP11Q96EK4 314 aa13.35□□□□□ -0.27
UPF3A-204ENST00000475218 IMMP1LQ96LU5 166 aa13.35□□□□□ -0.27
UPF3A-204ENST00000475218 YIPF2Q9BWQ6 316 aa13.35□□□□□ -0.27
UPF3A-204ENST00000475218 ZNF700Q9H0M5 742 aa13.35□□□□□ -0.27
UPF3A-204ENST00000475218 ARL15Q9NXU5 204 aa13.35□□□□□ -0.27
UPF3A-204ENST00000475218 GRHL1Q9NZI5 618 aa13.35□□□□□ -0.27
UPF3A-204ENST00000475218 MKL2Q9ULH7 1088 aa13.35□□□□□ -0.27
UPF3A-204ENST00000475218 NBPF19A0A087WUL8 3843 aa13.34□□□□□ -0.27
UPF3A-204ENST00000475218 NSG1A0A0A6YYJ2 146 aa13.34□□□□□ -0.27
UPF3A-204ENST00000475218 CXorf49A8MYA2 514 aaPredicted RBP13.34□□□□□ -0.27
UPF3A-204ENST00000475218 ANXA5P08758 320 aa13.34□□□□□ -0.27
UPF3A-204ENST00000475218 CCND1P24385 295 aa13.34□□□□□ -0.27
UPF3A-204ENST00000475218 AP1S2P56377 157 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 61.3 ms