RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, human

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-209	ENST00000472044	GPC2	Q8N158	579 aa		3.36	□□□□□ -1.87
PTCD3-209	ENST00000472044	LRTM2	Q8N967	370 aa		3.36	□□□□□ -1.87
PTCD3-209	ENST00000472044	TMEM178A	Q8NBL3	297 aa		3.36	□□□□□ -1.87
PTCD3-209	ENST00000472044	TEKT1	Q969V4	418 aa		3.36	□□□□□ -1.87
PTCD3-209	ENST00000472044	PRAC1	Q96KF2	57 aa		3.36	□□□□□ -1.87
PTCD3-209	ENST00000472044	TSSK2	Q96PF2	358 aa		3.36	□□□□□ -1.87
PTCD3-209	ENST00000472044	NKX3-1	Q99801	234 aa	Predicted RBP	3.36	□□□□□ -1.87
PTCD3-209	ENST00000472044	ASCL2	Q99929	193 aa		3.36	□□□□□ -1.87
PTCD3-209	ENST00000472044	PIGQ	Q9BRB3	760 aa		3.36	□□□□□ -1.87
PTCD3-209	ENST00000472044	ATG101	Q9BSB4	218 aa		3.36	□□□□□ -1.87
PTCD3-209	ENST00000472044	FUCA2	Q9BTY2	467 aa		3.36	□□□□□ -1.87
PTCD3-209	ENST00000472044	UTP14A	Q9BVJ6	771 aa	Known RBP	3.36	□□□□□ -1.87
PTCD3-209	ENST00000472044	FUT8	Q9BYC5	575 aa		3.36	□□□□□ -1.87
PTCD3-209	ENST00000472044	DNAI2	Q9GZS0	605 aa		3.36	□□□□□ -1.87
PTCD3-209	ENST00000472044	LSG1	Q9H089	658 aa	Known RBP	3.36	□□□□□ -1.87
PTCD3-209	ENST00000472044	P2RY12	Q9H244	342 aa		3.36	□□□□□ -1.87
PTCD3-209	ENST00000472044	RNF121	Q9H920	327 aa		3.36	□□□□□ -1.87
PTCD3-209	ENST00000472044	IARS2	Q9NSE4	1012 aa	Known RBP	3.36	□□□□□ -1.87
PTCD3-209	ENST00000472044	ATAD3A	Q9NVI7	634 aa		3.36	□□□□□ -1.87
PTCD3-209	ENST00000472044	GPR132	Q9UNW8	380 aa		3.36	□□□□□ -1.87
PTCD3-209	ENST00000472044	AGTPBP1	Q9UPW5	1226 aa		3.36	□□□□□ -1.87
PTCD3-209	ENST00000472044	RUVBL2	Q9Y230	463 aa	Known RBP	3.36	□□□□□ -1.87
PTCD3-209	ENST00000472044	SPATA31D1	Q6ZQQ2	1576 aa		3.36	□□□□□ -1.87
PTCD3-209	ENST00000472044		A0A087WUV0	522 aa	Predicted RBP	3.35	□□□□□ -1.87
PTCD3-209	ENST00000472044	MTMR11	A4FU01	709 aa		3.35	□□□□□ -1.87
PTCD3-209	ENST00000472044	NR5A2	O00482	541 aa		3.35	□□□□□ -1.87
PTCD3-209	ENST00000472044	LINC01565	O15544	149 aa		3.35	□□□□□ -1.87
PTCD3-209	ENST00000472044	KRT86	O43790	486 aa		3.35	□□□□□ -1.87
PTCD3-209	ENST00000472044	IGLV1-44	P01699	117 aa		3.35	□□□□□ -1.87
PTCD3-209	ENST00000472044	ZNF26	P17031	533 aa	Predicted RBP	3.35	□□□□□ -1.87
PTCD3-209	ENST00000472044	CCND3	P30281	292 aa	Predicted RBP	3.35	□□□□□ -1.87
PTCD3-209	ENST00000472044	OR3A1	P47881	315 aa		3.35	□□□□□ -1.87
PTCD3-209	ENST00000472044	OR3A3	P47888	321 aa		3.35	□□□□□ -1.87
PTCD3-209	ENST00000472044	NPBWR1	P48145	328 aa		3.35	□□□□□ -1.87
PTCD3-209	ENST00000472044	CRIP2	P52943	208 aa	Predicted RBP	3.35	□□□□□ -1.87
PTCD3-209	ENST00000472044	CLDN17	P56750	224 aa		3.35	□□□□□ -1.87
PTCD3-209	ENST00000472044	OR1D5	P58170	312 aa		3.35	□□□□□ -1.87
PTCD3-209	ENST00000472044	ST8SIA6	P61647	398 aa		3.35	□□□□□ -1.87
PTCD3-209	ENST00000472044	CSNK2B	P67870	215 aa		3.35	□□□□□ -1.87
PTCD3-209	ENST00000472044	FOLH1	Q04609	750 aa		3.35	□□□□□ -1.87
PTCD3-209	ENST00000472044	SGCG	Q13326	291 aa		3.35	□□□□□ -1.87
PTCD3-209	ENST00000472044	KRT81	Q14533	505 aa		3.35	□□□□□ -1.87
PTCD3-209	ENST00000472044	PTPN14	Q15678	1187 aa		3.35	□□□□□ -1.87
PTCD3-209	ENST00000472044	GLRA4	Q5JXX5	417 aa		3.35	□□□□□ -1.87
PTCD3-209	ENST00000472044	ADAMTSL4-AS1	Q5T5F5	129 aa		3.35	□□□□□ -1.87
PTCD3-209	ENST00000472044	FAM46C	Q5VWP2	391 aa		3.35	□□□□□ -1.87
PTCD3-209	ENST00000472044	ARHGAP11A	Q6P4F7	1023 aa		3.35	□□□□□ -1.87
PTCD3-209	ENST00000472044	IYD	Q6PHW0	289 aa		3.35	□□□□□ -1.87
PTCD3-209	ENST00000472044		Q6ZTC4	211 aa		3.35	□□□□□ -1.87
PTCD3-209	ENST00000472044	BTN2A1	Q7KYR7	527 aa		3.35	□□□□□ -1.87
PTCD3-209	ENST00000472044	FCRLA	Q7L513	359 aa		3.35	□□□□□ -1.87
PTCD3-209	ENST00000472044	BHLHA9	Q7RTU4	235 aa		3.35	□□□□□ -1.87
PTCD3-209	ENST00000472044	ZNF329	Q86UD4	541 aa		3.35	□□□□□ -1.87
PTCD3-209	ENST00000472044	TUSC5	Q8IXB3	177 aa		3.35	□□□□□ -1.87
PTCD3-209	ENST00000472044	GBP7	Q8N8V2	638 aa	Predicted RBP	3.35	□□□□□ -1.87
PTCD3-209	ENST00000472044	CKAP2	Q8WWK9	683 aa		3.35	□□□□□ -1.87
PTCD3-209	ENST00000472044	PTP4A1	Q93096	173 aa		3.35	□□□□□ -1.87
PTCD3-209	ENST00000472044	AZIN2	Q96A70	460 aa		3.35	□□□□□ -1.87
PTCD3-209	ENST00000472044	PI4K2A	Q9BTU6	479 aa		3.35	□□□□□ -1.87
PTCD3-209	ENST00000472044	EGLN3	Q9H6Z9	239 aa		3.35	□□□□□ -1.87
PTCD3-209	ENST00000472044	ABCB8	Q9NUT2	735 aa		3.35	□□□□□ -1.87
PTCD3-209	ENST00000472044	DNAJC17	Q9NVM6	304 aa	Known RBP	3.35	□□□□□ -1.87
PTCD3-209	ENST00000472044	TMEM181	Q9P2C4	612 aa		3.35	□□□□□ -1.87
PTCD3-209	ENST00000472044	EPHA6	Q9UF33	1036 aa		3.35	□□□□□ -1.87
PTCD3-209	ENST00000472044	FBXL4	Q9UKA2	621 aa		3.35	□□□□□ -1.87
PTCD3-209	ENST00000472044	PILRB	Q9UKJ0	227 aa		3.35	□□□□□ -1.87
PTCD3-209	ENST00000472044	WDR37	Q9Y2I8	494 aa		3.35	□□□□□ -1.87
PTCD3-209	ENST00000472044	PYGO1	Q9Y3Y4	419 aa		3.35	□□□□□ -1.87
PTCD3-209	ENST00000472044	CNTNAP2	Q9UHC6	1331 aa		3.35	□□□□□ -1.87
PTCD3-209	ENST00000472044	SCO2	O43819	266 aa		3.34	□□□□□ -1.87
PTCD3-209	ENST00000472044	FMO6P	O60774	539 aa		3.34	□□□□□ -1.87
PTCD3-209	ENST00000472044	RAD51D	O75771	328 aa		3.34	□□□□□ -1.87
PTCD3-209	ENST00000472044	ZFAND5	O76080	213 aa		3.34	□□□□□ -1.87
PTCD3-209	ENST00000472044	SLC16A8	O95907	504 aa		3.34	□□□□□ -1.87
PTCD3-209	ENST00000472044	GH1	P01241	217 aa		3.34	□□□□□ -1.87
PTCD3-209	ENST00000472044	RPL35A	P18077	110 aa	Known RBP	3.34	□□□□□ -1.87
PTCD3-209	ENST00000472044	ITIH1	P19827	911 aa		3.34	□□□□□ -1.87
PTCD3-209	ENST00000472044	ELAVL4	P26378	380 aa	Known RBP	3.34	□□□□□ -1.87
PTCD3-209	ENST00000472044	PIK3R1	P27986	724 aa		3.34	□□□□□ -1.87
PTCD3-209	ENST00000472044	RBMS1	P29558	406 aa	Known RBP	3.34	□□□□□ -1.87
PTCD3-209	ENST00000472044	COPB2	P35606	906 aa		3.34	□□□□□ -1.87
PTCD3-209	ENST00000472044	OR3A2	P47893	321 aa		3.34	□□□□□ -1.87
PTCD3-209	ENST00000472044	SNU13	P55769	128 aa	Known RBP	3.34	□□□□□ -1.87
PTCD3-209	ENST00000472044	STX1B	P61266	288 aa		3.34	□□□□□ -1.87
PTCD3-209	ENST00000472044	SP3	Q02447	781 aa		3.34	□□□□□ -1.87
PTCD3-209	ENST00000472044	GUCY2D	Q02846	1103 aa		3.34	□□□□□ -1.87
PTCD3-209	ENST00000472044	ARHGAP1	Q07960	439 aa		3.34	□□□□□ -1.87
PTCD3-209	ENST00000472044	MORF4L2	Q15014	288 aa		3.34	□□□□□ -1.87
PTCD3-209	ENST00000472044	EFTUD2	Q15029	972 aa	Known RBP eCLIP	3.34	□□□□□ -1.87	1e-9	■■□□□ 11.5
PTCD3-209	ENST00000472044	FUT11	Q495W5	492 aa		3.34	□□□□□ -1.87
PTCD3-209	ENST00000472044	IQCC	Q4KMZ1	466 aa		3.34	□□□□□ -1.87
PTCD3-209	ENST00000472044	FIP1L1	Q6UN15	594 aa	Known RBP	3.34	□□□□□ -1.87
PTCD3-209	ENST00000472044	SLC24A5	Q71RS6	500 aa		3.34	□□□□□ -1.87
PTCD3-209	ENST00000472044	IQCA1	Q86XH1	822 aa		3.34	□□□□□ -1.87
PTCD3-209	ENST00000472044	SYCP3	Q8IZU3	236 aa		3.34	□□□□□ -1.87
PTCD3-209	ENST00000472044	TMCO5A	Q8N6Q1	288 aa		3.34	□□□□□ -1.87
PTCD3-209	ENST00000472044	GPRC5A	Q8NFJ5	357 aa		3.34	□□□□□ -1.87
PTCD3-209	ENST00000472044	UBLCP1	Q8WVY7	318 aa	Predicted RBP	3.34	□□□□□ -1.87
PTCD3-209	ENST00000472044	RBM41	Q96IZ5	413 aa	Known RBP	3.34	□□□□□ -1.87
PTCD3-209	ENST00000472044	MAGED4	Q96JG8	741 aa		3.34	□□□□□ -1.87

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