RNA–Protein interactions for RNA: ENST00000467985.1

COL7A1-207, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 709 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-207ENST00000467985 SHANK1Q9Y566 2161 aa18.11■□□□□ 0.49
COL7A1-207ENST00000467985 A0A1W2PQ72 361 aa18.11■□□□□ 0.49
COL7A1-207ENST00000467985 H0YIG0 161 aa18.11■□□□□ 0.49
COL7A1-207ENST00000467985 TP73O15350 636 aa18.11■□□□□ 0.49
COL7A1-207ENST00000467985 ALOX12BO75342 701 aa18.11■□□□□ 0.49
COL7A1-207ENST00000467985 NPPBP16860 134 aa18.11■□□□□ 0.49
COL7A1-207ENST00000467985 RPL21P46778 160 aaKnown RBP18.11■□□□□ 0.49
COL7A1-207ENST00000467985 C2orf54Q08AI8 447 aa18.11■□□□□ 0.49
COL7A1-207ENST00000467985 Q6ZS92 163 aa18.11■□□□□ 0.49
COL7A1-207ENST00000467985 MAATS1Q7Z4T9 603 aa18.11■□□□□ 0.49
COL7A1-207ENST00000467985 VN1R4Q7Z5H5 301 aa18.11■□□□□ 0.49
COL7A1-207ENST00000467985 LAPTM4BQ86VI4 370 aa18.11■□□□□ 0.49
COL7A1-207ENST00000467985 KBTBD2Q8IY47 623 aa18.11■□□□□ 0.49
COL7A1-207ENST00000467985 NKAPQ8N5F7 415 aaKnown RBP18.11■□□□□ 0.49
COL7A1-207ENST00000467985 SPATA4Q8NEY3 305 aa18.11■□□□□ 0.49
COL7A1-207ENST00000467985 OR56A3Q8NH54 315 aa18.11■□□□□ 0.49
COL7A1-207ENST00000467985 PPP4R1Q8TF05 950 aa18.11■□□□□ 0.49
COL7A1-207ENST00000467985 ANKRD7Q92527 254 aa18.11■□□□□ 0.49
COL7A1-207ENST00000467985 ALKBH8Q96BT7 664 aaKnown RBP18.11■□□□□ 0.49
COL7A1-207ENST00000467985 FBXL8Q96CD0 374 aa18.11■□□□□ 0.49
COL7A1-207ENST00000467985 THOC3Q96J01 351 aaKnown RBP18.11■□□□□ 0.49
COL7A1-207ENST00000467985 WDR77Q9BQA1 342 aaPredicted RBP18.11■□□□□ 0.49
COL7A1-207ENST00000467985 EPS8L2Q9H6S3 715 aa18.11■□□□□ 0.49
COL7A1-207ENST00000467985 ZNF160Q9HCG1 818 aa18.11■□□□□ 0.49
COL7A1-207ENST00000467985 MOCS1Q9NZB8 636 aa18.11■□□□□ 0.49
COL7A1-207ENST00000467985 NOVA2Q9UNW9 492 aaKnown RBP18.11■□□□□ 0.49
COL7A1-207ENST00000467985 NAV2Q8IVL1 2488 aa18.11■□□□□ 0.49
COL7A1-207ENST00000467985 NSG1A0A0A6YYJ2 146 aa18.1■□□□□ 0.49
COL7A1-207ENST00000467985 CTAGE15A4D2H0 777 aa18.1■□□□□ 0.49
COL7A1-207ENST00000467985 FAM187AA6NFU0 413 aa18.1■□□□□ 0.49
COL7A1-207ENST00000467985 NSA2O95478 260 aaKnown RBP18.1■□□□□ 0.49
COL7A1-207ENST00000467985 CYC1P08574 325 aa18.1■□□□□ 0.49
COL7A1-207ENST00000467985 CTAGE8P0CG41 777 aa18.1■□□□□ 0.49
COL7A1-207ENST00000467985 GNLYP22749 145 aa18.1■□□□□ 0.49
COL7A1-207ENST00000467985 CCR8P51685 355 aa18.1■□□□□ 0.49
COL7A1-207ENST00000467985 AP2B1P63010 937 aa18.1■□□□□ 0.49
COL7A1-207ENST00000467985 CALCOCO2Q13137 446 aa18.1■□□□□ 0.49
COL7A1-207ENST00000467985 PRR30Q53SZ7 412 aaPredicted RBP18.1■□□□□ 0.49
COL7A1-207ENST00000467985 STRA8Q7Z7C7 330 aa18.1■□□□□ 0.49
COL7A1-207ENST00000467985 CTAGE6Q86UF2 777 aa18.1■□□□□ 0.49
COL7A1-207ENST00000467985 CTAGE4Q8IX94 777 aa18.1■□□□□ 0.49
COL7A1-207ENST00000467985 TBC1D19Q8N5T2 526 aa18.1■□□□□ 0.49
COL7A1-207ENST00000467985 ABHD11Q8NFV4 315 aa18.1■□□□□ 0.49
COL7A1-207ENST00000467985 TM4SF19Q96DZ7 209 aa18.1■□□□□ 0.49
COL7A1-207ENST00000467985 VPS39Q96JC1 886 aa18.1■□□□□ 0.49
COL7A1-207ENST00000467985 OLFM1Q99784 485 aa18.1■□□□□ 0.49
COL7A1-207ENST00000467985 ZBTB20Q9HC78 741 aaPredicted RBP18.1■□□□□ 0.49
COL7A1-207ENST00000467985 SNX24Q9Y343 169 aa18.1■□□□□ 0.49
COL7A1-207ENST00000467985 SPTBN1Q01082 2364 aaKnown RBP18.1■□□□□ 0.49
COL7A1-207ENST00000467985 CNTRLQ7Z7A1 2325 aa18.1■□□□□ 0.49
COL7A1-207ENST00000467985 SLC35G6P0C7Q6 338 aa18.09■□□□□ 0.49
COL7A1-207ENST00000467985 COX6A1P12074 109 aa18.09■□□□□ 0.49
COL7A1-207ENST00000467985 CDH1P12830 882 aa18.09■□□□□ 0.49
COL7A1-207ENST00000467985 ZNF37AP17032 561 aaPredicted RBP18.09■□□□□ 0.49
COL7A1-207ENST00000467985 UQCRFS1P47985 274 aa18.09■□□□□ 0.49
COL7A1-207ENST00000467985 Q0VFX4 171 aa18.09■□□□□ 0.49
COL7A1-207ENST00000467985 TMEM214Q6NUQ4 689 aaKnown RBP18.09■□□□□ 0.49
COL7A1-207ENST00000467985 ISLR2Q6UXK2 745 aa18.09■□□□□ 0.49
COL7A1-207ENST00000467985 RIPOR1Q6ZS17 1223 aa18.09■□□□□ 0.49
COL7A1-207ENST00000467985 ASPGQ86U10 573 aa18.09■□□□□ 0.49
COL7A1-207ENST00000467985 ZC3HC1Q86WB0 502 aaKnown RBP18.09■□□□□ 0.49
COL7A1-207ENST00000467985 ZC3H7AQ8IWR0 971 aaKnown RBP18.09■□□□□ 0.49
COL7A1-207ENST00000467985 ZBED8Q8IZ13 594 aa18.09■□□□□ 0.49
COL7A1-207ENST00000467985 OR9A4Q8NGU2 314 aa18.09■□□□□ 0.49
COL7A1-207ENST00000467985 SLC13A3Q8WWT9 602 aa18.09■□□□□ 0.49
COL7A1-207ENST00000467985 C8orf44Q96CB5 159 aa18.09■□□□□ 0.49
COL7A1-207ENST00000467985 SNRNP40Q96DI7 357 aaKnown RBP18.09■□□□□ 0.49
COL7A1-207ENST00000467985 LMF1Q96S06 567 aa18.09■□□□□ 0.49
COL7A1-207ENST00000467985 ERP44Q9BS26 406 aa18.09■□□□□ 0.49
COL7A1-207ENST00000467985 SARGQ9BW04 601 aa18.09■□□□□ 0.49
COL7A1-207ENST00000467985 RIC8BQ9NVN3 520 aa18.09■□□□□ 0.49
COL7A1-207ENST00000467985 WHRNQ9P202 907 aa18.09■□□□□ 0.49
COL7A1-207ENST00000467985 MKL2Q9ULH7 1088 aa18.09■□□□□ 0.49
COL7A1-207ENST00000467985 SH2B3Q9UQQ2 575 aa18.09■□□□□ 0.49
COL7A1-207ENST00000467985 PSAT1Q9Y617 370 aa18.09■□□□□ 0.49
COL7A1-207ENST00000467985 LOC102723996A0A087X1L8 192 aa18.08■□□□□ 0.48
COL7A1-207ENST00000467985 FAM95CA0A1B0GW59 222 aa18.08■□□□□ 0.48
COL7A1-207ENST00000467985 FFAR3O14843 346 aa18.08■□□□□ 0.48
COL7A1-207ENST00000467985 GPR42O15529 346 aa18.08■□□□□ 0.48
COL7A1-207ENST00000467985 BMP10O95393 424 aa18.08■□□□□ 0.48
COL7A1-207ENST00000467985 SERPINA7P05543 415 aa18.08■□□□□ 0.48
COL7A1-207ENST00000467985 ICAM2P13598 275 aa18.08■□□□□ 0.48
COL7A1-207ENST00000467985 BCL6P41182 706 aa18.08■□□□□ 0.48
COL7A1-207ENST00000467985 SRSF1Q07955 248 aaKnown RBP eCLIP18.08■□□□□ 0.481e-6■■■■□ 19.6
COL7A1-207ENST00000467985 FASTKD3Q14CZ7 662 aaKnown RBP18.08■□□□□ 0.48
COL7A1-207ENST00000467985 CRB2Q5IJ48 1285 aa18.08■□□□□ 0.48
COL7A1-207ENST00000467985 FHL5Q5TD97 284 aa18.08■□□□□ 0.48
COL7A1-207ENST00000467985 SBSNQ6UWP8 590 aa18.08■□□□□ 0.48
COL7A1-207ENST00000467985 ZNF572Q7Z3I7 529 aaPredicted RBP18.08■□□□□ 0.48
COL7A1-207ENST00000467985 MFSD9Q8NBP5 474 aa18.08■□□□□ 0.48
COL7A1-207ENST00000467985 OR4K1Q8NGD4 311 aa18.08■□□□□ 0.48
COL7A1-207ENST00000467985 DNAJB14Q8TBM8 379 aa18.08■□□□□ 0.48
COL7A1-207ENST00000467985 PYROXD1Q8WU10 500 aa18.08■□□□□ 0.48
COL7A1-207ENST00000467985 METTL21AQ8WXB1 218 aa18.08■□□□□ 0.48
COL7A1-207ENST00000467985 PYCR2Q96C36 320 aa18.08■□□□□ 0.48
COL7A1-207ENST00000467985 ZNF700Q9H0M5 742 aa18.08■□□□□ 0.48
COL7A1-207ENST00000467985 POPDC3Q9HBV1 291 aa18.08■□□□□ 0.48
COL7A1-207ENST00000467985 ANKHQ9HCJ1 492 aa18.08■□□□□ 0.48
COL7A1-207ENST00000467985 MRPS2Q9Y399 296 aaKnown RBP18.08■□□□□ 0.48
COL7A1-207ENST00000467985 PCDHGA10Q9Y5H3 936 aa18.08■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms