RNA–Protein interactions for RNA: ENST00000466538.1

CDC42BPA-211, Transcript of CDC42 binding protein kinase alpha, humanhuman

TSL 3

Gene CDC42BPA, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42BPA-211ENST00000466538 GBP7Q8N8V2 638 aaPredicted RBP3.9□□□□□ -1.79
CDC42BPA-211ENST00000466538 OR4C3Q8NH37 302 aa3.9□□□□□ -1.79
CDC42BPA-211ENST00000466538 OR1L3Q8NH93 324 aa3.9□□□□□ -1.79
CDC42BPA-211ENST00000466538 CABS1Q96KC9 395 aa3.9□□□□□ -1.79
CDC42BPA-211ENST00000466538 C10orf90Q96M02 699 aa3.9□□□□□ -1.79
CDC42BPA-211ENST00000466538 RASL10BQ96S79 203 aa3.9□□□□□ -1.79
CDC42BPA-211ENST00000466538 LPAR4Q99677 370 aa3.9□□□□□ -1.79
CDC42BPA-211ENST00000466538 NKX3-1Q99801 234 aaPredicted RBP3.9□□□□□ -1.79
CDC42BPA-211ENST00000466538 AKIRIN1Q9H9L7 192 aaPredicted RBP3.9□□□□□ -1.79
CDC42BPA-211ENST00000466538 RNPEPL1Q9HAU8 725 aa3.9□□□□□ -1.79
CDC42BPA-211ENST00000466538 CWC25Q9NXE8 425 aaPredicted RBP3.9□□□□□ -1.79
CDC42BPA-211ENST00000466538 MIS18AQ9NYP9 233 aa3.9□□□□□ -1.79
CDC42BPA-211ENST00000466538 ZNF580Q9UK33 172 aa3.9□□□□□ -1.79
CDC42BPA-211ENST00000466538 ELF5Q9UKW6 265 aaPredicted RBP3.9□□□□□ -1.79
CDC42BPA-211ENST00000466538 KIAA1210Q9ULL0 1709 aa3.9□□□□□ -1.79
CDC42BPA-211ENST00000466538 DDX39AO00148 427 aaKnown RBP3.89□□□□□ -1.79
CDC42BPA-211ENST00000466538 TTI1O43156 1089 aa3.89□□□□□ -1.79
CDC42BPA-211ENST00000466538 KHDRBS3O75525 346 aaKnown RBP3.89□□□□□ -1.79
CDC42BPA-211ENST00000466538 ATP1B1P05026 303 aa3.89□□□□□ -1.79
CDC42BPA-211ENST00000466538 PRSS56P0CW18 603 aa3.89□□□□□ -1.79
CDC42BPA-211ENST00000466538 PRKAR1AP10644 381 aa3.89□□□□□ -1.79
CDC42BPA-211ENST00000466538 ALDH1B1P30837 517 aa3.89□□□□□ -1.79
CDC42BPA-211ENST00000466538 DUTP33316 252 aaKnown RBP3.89□□□□□ -1.79
CDC42BPA-211ENST00000466538 DNA2P51530 1060 aa3.89□□□□□ -1.79
CDC42BPA-211ENST00000466538 CLDN17P56750 224 aa3.89□□□□□ -1.79
CDC42BPA-211ENST00000466538 LINC01547P58512 204 aaPredicted RBP3.89□□□□□ -1.79
CDC42BPA-211ENST00000466538 ACTN3Q08043 901 aaPredicted RBP3.89□□□□□ -1.79
CDC42BPA-211ENST00000466538 ABRQ12979 859 aa3.89□□□□□ -1.79
CDC42BPA-211ENST00000466538 TRIM29Q14134 588 aa3.89□□□□□ -1.79
CDC42BPA-211ENST00000466538 PPA1Q15181 289 aa3.89□□□□□ -1.79
CDC42BPA-211ENST00000466538 RPS6KA1Q15418 735 aa3.89□□□□□ -1.79
CDC42BPA-211ENST00000466538 AARDQ4LEZ3 155 aa3.89□□□□□ -1.79
CDC42BPA-211ENST00000466538 FGD3Q5JSP0 725 aa3.89□□□□□ -1.79
CDC42BPA-211ENST00000466538 C9orf50Q5SZB4 431 aa3.89□□□□□ -1.79
CDC42BPA-211ENST00000466538 AGAP6Q5VW22 663 aa3.89□□□□□ -1.79
CDC42BPA-211ENST00000466538 ZNF770Q6IQ21 691 aaPredicted RBP3.89□□□□□ -1.79
CDC42BPA-211ENST00000466538 PLBD1Q6P4A8 553 aa3.89□□□□□ -1.79
CDC42BPA-211ENST00000466538 SH2D5Q6ZV89 423 aa3.89□□□□□ -1.79
CDC42BPA-211ENST00000466538 CROCCP3Q8IVE0 287 aa3.89□□□□□ -1.79
CDC42BPA-211ENST00000466538 TMEM99Q8N816 258 aa3.89□□□□□ -1.79
CDC42BPA-211ENST00000466538 LPCAT1Q8NF37 534 aa3.89□□□□□ -1.79
CDC42BPA-211ENST00000466538 KBTBD8Q8NFY9 601 aa3.89□□□□□ -1.79
CDC42BPA-211ENST00000466538 TMEM190Q8WZ59 177 aa3.89□□□□□ -1.79
CDC42BPA-211ENST00000466538 KRT35Q92764 455 aa3.89□□□□□ -1.79
CDC42BPA-211ENST00000466538 BCL2L2Q92843 193 aaPredicted RBP3.89□□□□□ -1.79
CDC42BPA-211ENST00000466538 ATP6V0A1Q93050 837 aa3.89□□□□□ -1.79
CDC42BPA-211ENST00000466538 NODALQ96S42 347 aa3.89□□□□□ -1.79
CDC42BPA-211ENST00000466538 PRMT1Q99873 361 aaKnown RBP3.89□□□□□ -1.79
CDC42BPA-211ENST00000466538 ALKBH7Q9BT30 221 aaPredicted RBP3.89□□□□□ -1.79
CDC42BPA-211ENST00000466538 CACNG6Q9BXT2 260 aa3.89□□□□□ -1.79
CDC42BPA-211ENST00000466538 THAP2Q9H0W7 228 aa3.89□□□□□ -1.79
CDC42BPA-211ENST00000466538 DBNDD1Q9H9R9 158 aa3.89□□□□□ -1.79
CDC42BPA-211ENST00000466538 RPF1Q9H9Y2 349 aaKnown RBP3.89□□□□□ -1.79
CDC42BPA-211ENST00000466538 EXOC1Q9NV70 894 aa3.89□□□□□ -1.79
CDC42BPA-211ENST00000466538 NOCTQ9UK39 431 aaKnown RBP3.89□□□□□ -1.79
CDC42BPA-211ENST00000466538 FBXL4Q9UKA2 621 aa3.89□□□□□ -1.79
CDC42BPA-211ENST00000466538 HBS1LQ9Y450 684 aaKnown RBP3.89□□□□□ -1.79
CDC42BPA-211ENST00000466538 STK36Q9NRP7 1315 aa3.89□□□□□ -1.79
CDC42BPA-211ENST00000466538 IGHV4-4A0A075B6R2 117 aa3.88□□□□□ -1.79
CDC42BPA-211ENST00000466538 CACNB4O00305 520 aaPredicted RBP3.88□□□□□ -1.79
CDC42BPA-211ENST00000466538 TEX28O15482 410 aa3.88□□□□□ -1.79
CDC42BPA-211ENST00000466538 KERAO60938 352 aa3.88□□□□□ -1.79
CDC42BPA-211ENST00000466538 AKAP3O75969 853 aa3.88□□□□□ -1.79
CDC42BPA-211ENST00000466538 RAF1P04049 648 aa3.88□□□□□ -1.79
CDC42BPA-211ENST00000466538 SLC2A2P11168 524 aaPredicted RBP3.88□□□□□ -1.79
CDC42BPA-211ENST00000466538 ELAVL4P26378 380 aaKnown RBP3.88□□□□□ -1.79
CDC42BPA-211ENST00000466538 RPA4Q13156 261 aa3.88□□□□□ -1.79
CDC42BPA-211ENST00000466538 PPP2R5CQ13362 524 aa3.88□□□□□ -1.79
CDC42BPA-211ENST00000466538 RBM39Q14498 530 aaKnown RBP3.88□□□□□ -1.79
CDC42BPA-211ENST00000466538 PTPN14Q15678 1187 aa3.88□□□□□ -1.79
CDC42BPA-211ENST00000466538 EXT1Q16394 746 aa3.88□□□□□ -1.79
CDC42BPA-211ENST00000466538 SGCBQ16585 318 aa3.88□□□□□ -1.79
CDC42BPA-211ENST00000466538 GTDC1Q4AE62 458 aa3.88□□□□□ -1.79
CDC42BPA-211ENST00000466538 RUSC1-AS1Q66K80 236 aa3.88□□□□□ -1.79
CDC42BPA-211ENST00000466538 SLC25A47Q6Q0C1 308 aa3.88□□□□□ -1.79
CDC42BPA-211ENST00000466538 TMEM207Q6UWW9 146 aa3.88□□□□□ -1.79
CDC42BPA-211ENST00000466538 FCRLAQ7L513 359 aa3.88□□□□□ -1.79
CDC42BPA-211ENST00000466538 COX8CQ7Z4L0 72 aa3.88□□□□□ -1.79
CDC42BPA-211ENST00000466538 KLHDC1Q8N7A1 406 aa3.88□□□□□ -1.79
CDC42BPA-211ENST00000466538 GPATCH11Q8N954 259 aa3.88□□□□□ -1.79
CDC42BPA-211ENST00000466538 SLC37A3Q8NCC5 494 aa3.88□□□□□ -1.79
CDC42BPA-211ENST00000466538 KIAA0895Q8NCT3 520 aa3.88□□□□□ -1.79
CDC42BPA-211ENST00000466538 OR4C15Q8NGM1 316 aa3.88□□□□□ -1.79
CDC42BPA-211ENST00000466538 OR10G8Q8NGN5 311 aa3.88□□□□□ -1.79
CDC42BPA-211ENST00000466538 OR2T11Q8NH01 316 aa3.88□□□□□ -1.79
CDC42BPA-211ENST00000466538 UBE2Q2Q8WVN8 375 aa3.88□□□□□ -1.79
CDC42BPA-211ENST00000466538 APOBEC4Q8WW27 367 aaKnown RBP3.88□□□□□ -1.79
CDC42BPA-211ENST00000466538 EEF2KMTQ96G04 330 aa3.88□□□□□ -1.79
CDC42BPA-211ENST00000466538 CFAP36Q96G28 342 aa3.88□□□□□ -1.79
CDC42BPA-211ENST00000466538 RBM41Q96IZ5 413 aaKnown RBP3.88□□□□□ -1.79
CDC42BPA-211ENST00000466538 EGLN3Q9H6Z9 239 aa3.88□□□□□ -1.79
CDC42BPA-211ENST00000466538 ATP13A3Q9H7F0 1226 aa3.88□□□□□ -1.79
CDC42BPA-211ENST00000466538 MRPL17Q9NRX2 175 aaKnown RBP3.88□□□□□ -1.79
CDC42BPA-211ENST00000466538 PNPLA3Q9NST1 481 aa3.88□□□□□ -1.79
CDC42BPA-211ENST00000466538 PANK4Q9NVE7 773 aa3.88□□□□□ -1.79
CDC42BPA-211ENST00000466538 MAD2L2Q9UI95 211 aa3.88□□□□□ -1.79
CDC42BPA-211ENST00000466538 FBXW2Q9UKT8 454 aa3.88□□□□□ -1.79
CDC42BPA-211ENST00000466538 PCDHGA1Q9Y5H4 931 aa3.88□□□□□ -1.79
CDC42BPA-211ENST00000466538 SCN5AQ14524 2016 aa3.88□□□□□ -1.79
CDC42BPA-211ENST00000466538 NPHP3Q7Z494 1330 aa3.88□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms