RNA–Protein interactions for RNA: ENST00000463007.5

HDAC4-208, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,158 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-208ENST00000463007 AGAP5A6NIR3 686 aa12.02□□□□□ -0.48
HDAC4-208ENST00000463007 SLC16A6O15403 523 aa12.02□□□□□ -0.48
HDAC4-208ENST00000463007 PTHP01270 115 aa12.02□□□□□ -0.48
HDAC4-208ENST00000463007 CSF2P04141 144 aa12.02□□□□□ -0.48
HDAC4-208ENST00000463007 COX7A2P14406 83 aa12.02□□□□□ -0.48
HDAC4-208ENST00000463007 RPIAP49247 311 aa12.02□□□□□ -0.48
HDAC4-208ENST00000463007 CDH12P55289 794 aa12.02□□□□□ -0.48
HDAC4-208ENST00000463007 PLEKHG6Q3KR16 790 aa12.02□□□□□ -0.48
HDAC4-208ENST00000463007 SPATS1Q496A3 300 aa12.02□□□□□ -0.48
HDAC4-208ENST00000463007 INO80DQ53TQ3 878 aaPredicted RBP12.02□□□□□ -0.48
HDAC4-208ENST00000463007 ZMAT1Q5H9K5 638 aa12.02□□□□□ -0.48
HDAC4-208ENST00000463007 ADNP2Q6IQ32 1131 aa12.02□□□□□ -0.48
HDAC4-208ENST00000463007 AADATQ8N5Z0 425 aa12.02□□□□□ -0.48
HDAC4-208ENST00000463007 AMER2Q8N7J2 671 aa12.02□□□□□ -0.48
HDAC4-208ENST00000463007 FOXJ1Q92949 421 aa12.02□□□□□ -0.48
HDAC4-208ENST00000463007 SH3KBP1Q96B97 665 aa12.02□□□□□ -0.48
HDAC4-208ENST00000463007 TMEM121BQ9BXQ6 578 aaPredicted RBP12.02□□□□□ -0.48
HDAC4-208ENST00000463007 CLMPQ9H6B4 373 aa12.02□□□□□ -0.48
HDAC4-208ENST00000463007 TIGARQ9NQ88 270 aa12.02□□□□□ -0.48
HDAC4-208ENST00000463007 PAK6Q9NQU5 681 aaPredicted RBP12.02□□□□□ -0.48
HDAC4-208ENST00000463007 FBXO8Q9NRD0 319 aa12.02□□□□□ -0.48
HDAC4-208ENST00000463007 TBC1D14Q9P2M4 693 aa12.02□□□□□ -0.48
HDAC4-208ENST00000463007 CD84Q9UIB8 345 aa12.02□□□□□ -0.48
HDAC4-208ENST00000463007 DHRS7Q9Y394 339 aa12.02□□□□□ -0.48
HDAC4-208ENST00000463007 APOA1P02647 267 aa12.02□□□□□ -0.49
HDAC4-208ENST00000463007 ESR1P03372 595 aa12.02□□□□□ -0.49
HDAC4-208ENST00000463007 FHP07954 510 aa12.02□□□□□ -0.49
HDAC4-208ENST00000463007 CKMT1AP12532 417 aa12.02□□□□□ -0.49
HDAC4-208ENST00000463007 TGFBR2P37173 567 aa12.02□□□□□ -0.49
HDAC4-208ENST00000463007 PTGER3P43115 390 aa12.02□□□□□ -0.49
HDAC4-208ENST00000463007 KIR3DL1P43629 444 aa12.02□□□□□ -0.49
HDAC4-208ENST00000463007 ST3GAL4Q11206 333 aa12.02□□□□□ -0.49
HDAC4-208ENST00000463007 RFX4Q33E94 735 aa12.02□□□□□ -0.49
HDAC4-208ENST00000463007 BCL7AQ4VC05 210 aa12.02□□□□□ -0.49
HDAC4-208ENST00000463007 TPGS2Q68CL5 300 aa12.02□□□□□ -0.49
HDAC4-208ENST00000463007 RFLNAQ6ZTI6 216 aa12.02□□□□□ -0.49
HDAC4-208ENST00000463007 ANKRD33Q7Z3H0 272 aa12.02□□□□□ -0.49
HDAC4-208ENST00000463007 CHPFQ8IZ52 775 aa12.02□□□□□ -0.49
HDAC4-208ENST00000463007 COPS8Q99627 209 aa12.02□□□□□ -0.49
HDAC4-208ENST00000463007 C19orf43Q9BQ61 176 aa12.02□□□□□ -0.49
HDAC4-208ENST00000463007 CD244Q9BZW8 370 aa12.02□□□□□ -0.49
HDAC4-208ENST00000463007 FAM227AF5H4B4 570 aa12.02□□□□□ -0.49
HDAC4-208ENST00000463007 M0R082 166 aa12.02□□□□□ -0.49
HDAC4-208ENST00000463007 MED26O95402 600 aa12.02□□□□□ -0.49
HDAC4-208ENST00000463007 S100A1P23297 94 aa12.02□□□□□ -0.49
HDAC4-208ENST00000463007 DNAJA1P31689 397 aaKnown RBP12.02□□□□□ -0.49
HDAC4-208ENST00000463007 KDELR2P33947 212 aa12.02□□□□□ -0.49
HDAC4-208ENST00000463007 FEN1P39748 380 aaKnown RBP12.02□□□□□ -0.49
HDAC4-208ENST00000463007 CASP3P42574 277 aa12.02□□□□□ -0.49
HDAC4-208ENST00000463007 CRATP43155 626 aa12.02□□□□□ -0.49
HDAC4-208ENST00000463007 OR2B6P58173 313 aa12.02□□□□□ -0.49
HDAC4-208ENST00000463007 UBE3AQ05086 875 aa12.02□□□□□ -0.49
HDAC4-208ENST00000463007 CDKN3Q16667 212 aa12.02□□□□□ -0.49
HDAC4-208ENST00000463007 HS6ST3Q8IZP7 471 aa12.02□□□□□ -0.49
HDAC4-208ENST00000463007 OR9Q2Q8NGE9 314 aa12.02□□□□□ -0.49
HDAC4-208ENST00000463007 WFDC5Q8TCV5 224 aa12.02□□□□□ -0.49
HDAC4-208ENST00000463007 ZNF675Q8TD23 568 aa12.02□□□□□ -0.49
HDAC4-208ENST00000463007 SLC38A4Q969I6 547 aa12.02□□□□□ -0.49
HDAC4-208ENST00000463007 ZNF689Q96CS4 500 aaPredicted RBP12.02□□□□□ -0.49
HDAC4-208ENST00000463007 OR5M11Q96RB7 305 aa12.02□□□□□ -0.49
HDAC4-208ENST00000463007 SLC22A12Q96S37 553 aa12.02□□□□□ -0.49
HDAC4-208ENST00000463007 CTRCQ99895 268 aa12.02□□□□□ -0.49
HDAC4-208ENST00000463007 PSD2Q9BQI7 771 aa12.02□□□□□ -0.49
HDAC4-208ENST00000463007 CPPED1Q9BRF8 314 aaPredicted RBP12.02□□□□□ -0.49
HDAC4-208ENST00000463007 CNPPD1Q9BV87 410 aa12.02□□□□□ -0.49
HDAC4-208ENST00000463007 IL21Q9HBE4 155 aa12.02□□□□□ -0.49
HDAC4-208ENST00000463007 SERHLQ9NQF3 203 aa12.02□□□□□ -0.49
HDAC4-208ENST00000463007 SAMD4AQ9UPU9 718 aaKnown RBP12.02□□□□□ -0.49
HDAC4-208ENST00000463007 CCL27Q9Y4X3 112 aa12.02□□□□□ -0.49
HDAC4-208ENST00000463007 DYTNA2CJ06 578 aa12.01□□□□□ -0.49
HDAC4-208ENST00000463007 OR2A25A4D2G3 310 aa12.01□□□□□ -0.49
HDAC4-208ENST00000463007 J3KTA2 159 aa12.01□□□□□ -0.49
HDAC4-208ENST00000463007 CLDN9O95484 217 aa12.01□□□□□ -0.49
HDAC4-208ENST00000463007 KRT6AP02538 564 aa12.01□□□□□ -0.49
HDAC4-208ENST00000463007 SOD2P04179 222 aa12.01□□□□□ -0.49
HDAC4-208ENST00000463007 KRT6BP04259 564 aa12.01□□□□□ -0.49
HDAC4-208ENST00000463007 ZNF7P17097 686 aaPredicted RBP12.01□□□□□ -0.49
HDAC4-208ENST00000463007 SDC1P18827 310 aa12.01□□□□□ -0.49
HDAC4-208ENST00000463007 KRT6CP48668 564 aa12.01□□□□□ -0.49
HDAC4-208ENST00000463007 MNX1P50219 401 aaPredicted RBP12.01□□□□□ -0.49
HDAC4-208ENST00000463007 USP43Q70EL4 1123 aa12.01□□□□□ -0.49
HDAC4-208ENST00000463007 SNX20Q7Z614 316 aa12.01□□□□□ -0.49
HDAC4-208ENST00000463007 NRARPQ7Z6K4 114 aa12.01□□□□□ -0.49
HDAC4-208ENST00000463007 TRIM48Q8IWZ4 208 aa12.01□□□□□ -0.49
HDAC4-208ENST00000463007 CYP4Z2PQ8N1L4 340 aa12.01□□□□□ -0.49
HDAC4-208ENST00000463007 UBASH3BQ8TF42 649 aa12.01□□□□□ -0.49
HDAC4-208ENST00000463007 PHF10Q8WUB8 498 aaKnown RBP12.01□□□□□ -0.49
HDAC4-208ENST00000463007 CCDC115Q96NT0 180 aa12.01□□□□□ -0.49
HDAC4-208ENST00000463007 CDADC1Q9BWV3 514 aa12.01□□□□□ -0.49
HDAC4-208ENST00000463007 HOXD1Q9GZZ0 328 aa12.01□□□□□ -0.49
HDAC4-208ENST00000463007 IL1RAPQ9NPH3 570 aa12.01□□□□□ -0.49
HDAC4-208ENST00000463007 THG1LQ9NWX6 298 aaKnown RBP12.01□□□□□ -0.49
HDAC4-208ENST00000463007 IL17CQ9P0M4 197 aa12.01□□□□□ -0.49
HDAC4-208ENST00000463007 PABPN1LA6NDY0 278 aaKnown RBP12.01□□□□□ -0.49
HDAC4-208ENST00000463007 DSCR3O14972 297 aa12.01□□□□□ -0.49
HDAC4-208ENST00000463007 NUAK1O60285 661 aa12.01□□□□□ -0.49
HDAC4-208ENST00000463007 EPN2O95208 641 aa12.01□□□□□ -0.49
HDAC4-208ENST00000463007 RETP07949 1114 aa12.01□□□□□ -0.49
HDAC4-208ENST00000463007 LRRC74AQ0VAA2 488 aa12.01□□□□□ -0.49
HDAC4-208ENST00000463007 TAF12Q16514 161 aa12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms