RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 LSRQ86X29 649 aaPredicted RBP11.32□□□□□ -0.6
CPSF3-202ENST00000460593 APIPQ96GX9 242 aa11.32□□□□□ -0.6
CPSF3-202ENST00000460593 DHRS9Q9BPW9 319 aa11.32□□□□□ -0.6
CPSF3-202ENST00000460593 CCDC32Q9BV29 185 aa11.32□□□□□ -0.6
CPSF3-202ENST00000460593 SRRQ9GZT4 340 aa11.32□□□□□ -0.6
CPSF3-202ENST00000460593 DYRK4Q9NR20 520 aa11.32□□□□□ -0.6
CPSF3-202ENST00000460593 IMPAD1Q9NX62 359 aa11.32□□□□□ -0.6
CPSF3-202ENST00000460593 ABI2Q9NYB9 513 aaPredicted RBP11.32□□□□□ -0.6
CPSF3-202ENST00000460593 RHCGQ9UBD6 479 aa11.32□□□□□ -0.6
CPSF3-202ENST00000460593 PCDHGB2Q9Y5G2 931 aa11.32□□□□□ -0.6
CPSF3-202ENST00000460593 A3GALT2U3KPV4 340 aa11.32□□□□□ -0.6
CPSF3-202ENST00000460593 WNT9AO14904 365 aa11.32□□□□□ -0.6
CPSF3-202ENST00000460593 IL12RB1P42701 662 aa11.32□□□□□ -0.6
CPSF3-202ENST00000460593 CLCN7P51798 805 aa11.32□□□□□ -0.6
CPSF3-202ENST00000460593 TBX4P57082 545 aa11.32□□□□□ -0.6
CPSF3-202ENST00000460593 WDR53Q7Z5U6 358 aaPredicted RBP11.32□□□□□ -0.6
CPSF3-202ENST00000460593 TEX26Q8N6G2 289 aa11.32□□□□□ -0.6
CPSF3-202ENST00000460593 OR52E4Q8NGH9 312 aa11.32□□□□□ -0.6
CPSF3-202ENST00000460593 TADA1Q96BN2 335 aa11.32□□□□□ -0.6
CPSF3-202ENST00000460593 RIPOR3Q96MK2 946 aa11.32□□□□□ -0.6
CPSF3-202ENST00000460593 PRDM5Q9NQX1 630 aaPredicted RBP11.32□□□□□ -0.6
CPSF3-202ENST00000460593 SLC23A1Q9UHI7 598 aa11.32□□□□□ -0.6
CPSF3-202ENST00000460593 CFL2Q9Y281 166 aa11.32□□□□□ -0.6
CPSF3-202ENST00000460593 A8MX80 341 aa11.32□□□□□ -0.6
CPSF3-202ENST00000460593 NFKBIEO00221 500 aa11.32□□□□□ -0.6
CPSF3-202ENST00000460593 TNFRSF11BO00300 401 aa11.32□□□□□ -0.6
CPSF3-202ENST00000460593 FPGTO14772 594 aa11.32□□□□□ -0.6
CPSF3-202ENST00000460593 TNFRSF21O75509 655 aa11.32□□□□□ -0.6
CPSF3-202ENST00000460593 UGT2B17O75795 530 aa11.32□□□□□ -0.6
CPSF3-202ENST00000460593 CYP17A1P05093 508 aa11.32□□□□□ -0.6
CPSF3-202ENST00000460593 IGFBP1P08833 259 aaPredicted RBP11.32□□□□□ -0.6
CPSF3-202ENST00000460593 CSF3P09919 207 aa11.32□□□□□ -0.6
CPSF3-202ENST00000460593 HOXB8P17481 243 aaPredicted RBP11.32□□□□□ -0.6
CPSF3-202ENST00000460593 TIE1P35590 1138 aa11.32□□□□□ -0.6
CPSF3-202ENST00000460593 ARHGEF7Q14155 803 aa11.32□□□□□ -0.6
CPSF3-202ENST00000460593 GANABQ14697 944 aaKnown RBP11.32□□□□□ -0.6
CPSF3-202ENST00000460593 IQCCQ4KMZ1 466 aa11.32□□□□□ -0.6
CPSF3-202ENST00000460593 ANGPTL8Q6UXH0 198 aa11.32□□□□□ -0.6
CPSF3-202ENST00000460593 ZNF683Q8IZ20 524 aa11.32□□□□□ -0.6
CPSF3-202ENST00000460593 CIPCQ9C0C6 399 aa11.32□□□□□ -0.6
CPSF3-202ENST00000460593 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.32□□□□□ -0.6
CPSF3-202ENST00000460593 NUDT4Q9NZJ9 180 aa11.32□□□□□ -0.6
CPSF3-202ENST00000460593 SNX7Q9UNH6 387 aa11.32□□□□□ -0.6
CPSF3-202ENST00000460593 RALGAPA2Q2PPJ7 1873 aa11.31□□□□□ -0.6
CPSF3-202ENST00000460593 SLC25A27O95847 323 aa11.31□□□□□ -0.6
CPSF3-202ENST00000460593 CTSHP09668 335 aa11.31□□□□□ -0.6
CPSF3-202ENST00000460593 PSKH1P11801 424 aa11.31□□□□□ -0.6
CPSF3-202ENST00000460593 RHOQP17081 205 aa11.31□□□□□ -0.6
CPSF3-202ENST00000460593 PCSK1P29120 753 aa11.31□□□□□ -0.6
CPSF3-202ENST00000460593 GRK4P32298 578 aa11.31□□□□□ -0.6
CPSF3-202ENST00000460593 ETV6P41212 452 aa11.31□□□□□ -0.6
CPSF3-202ENST00000460593 KCNQ1P51787 676 aa11.31□□□□□ -0.6
CPSF3-202ENST00000460593 SEMG2Q02383 582 aa11.31□□□□□ -0.6
CPSF3-202ENST00000460593 C19orf57Q0VDD7 668 aa11.31□□□□□ -0.6
CPSF3-202ENST00000460593 SERINC3Q13530 473 aa11.31□□□□□ -0.6
CPSF3-202ENST00000460593 PCBP2Q15366 365 aaKnown RBP eCLIP11.31□□□□□ -0.6
CPSF3-202ENST00000460593 TMC8Q8IU68 726 aa11.31□□□□□ -0.6
CPSF3-202ENST00000460593 OR10G2Q8NGC3 310 aa11.31□□□□□ -0.6
CPSF3-202ENST00000460593 RASSF5Q8WWW0 418 aa11.31□□□□□ -0.6
CPSF3-202ENST00000460593 FRMD6Q96NE9 622 aa11.31□□□□□ -0.6
CPSF3-202ENST00000460593 OPALINQ96PE5 141 aa11.31□□□□□ -0.6
CPSF3-202ENST00000460593 ATP13A2Q9NQ11 1180 aa11.31□□□□□ -0.6
CPSF3-202ENST00000460593 PRSS21Q9Y6M0 314 aa11.31□□□□□ -0.6
CPSF3-202ENST00000460593 PLD2O14939 933 aa11.31□□□□□ -0.6
CPSF3-202ENST00000460593 THP07101 528 aa11.31□□□□□ -0.6
CPSF3-202ENST00000460593 CTPS1P17812 591 aa11.31□□□□□ -0.6
CPSF3-202ENST00000460593 SDC1P18827 310 aa11.31□□□□□ -0.6
CPSF3-202ENST00000460593 ITGA1P56199 1179 aa11.31□□□□□ -0.6
CPSF3-202ENST00000460593 CYP4F8P98187 520 aa11.31□□□□□ -0.6
CPSF3-202ENST00000460593 TATDN3Q17R31 274 aa11.31□□□□□ -0.6
CPSF3-202ENST00000460593 EXOC3L2Q2M3D2 409 aa11.31□□□□□ -0.6
CPSF3-202ENST00000460593 PYDC2Q56P42 97 aa11.31□□□□□ -0.6
CPSF3-202ENST00000460593 LRIF1Q5T3J3 769 aa11.31□□□□□ -0.6
CPSF3-202ENST00000460593 MFSD14CQ5VZR4 134 aa11.31□□□□□ -0.6
CPSF3-202ENST00000460593 TIGD4Q8IY51 512 aa11.31□□□□□ -0.6
CPSF3-202ENST00000460593 SELENOMQ8WWX9 145 aa11.31□□□□□ -0.6
CPSF3-202ENST00000460593 C7orf34Q96L11 122 aa11.31□□□□□ -0.6
CPSF3-202ENST00000460593 TRIB3Q96RU7 358 aa11.31□□□□□ -0.6
CPSF3-202ENST00000460593 HHATLQ9HCP6 504 aa11.31□□□□□ -0.6
CPSF3-202ENST00000460593 OLA1Q9NTK5 396 aaKnown RBP11.31□□□□□ -0.6
CPSF3-202ENST00000460593 TMEM248Q9NWD8 314 aa11.31□□□□□ -0.6
CPSF3-202ENST00000460593 UBA2Q9UBT2 640 aaPredicted RBP11.31□□□□□ -0.6
CPSF3-202ENST00000460593 YARS2Q9Y2Z4 477 aaKnown RBP11.31□□□□□ -0.6
CPSF3-202ENST00000460593 LOC285556D6RIA3 1793 aa11.3□□□□□ -0.6
CPSF3-202ENST00000460593 CIB4A0PJX0 185 aa11.3□□□□□ -0.6
CPSF3-202ENST00000460593 LEUTXA8MZ59 168 aa11.3□□□□□ -0.6
CPSF3-202ENST00000460593 NT5C1B-RDH14C9J2C7 533 aa11.3□□□□□ -0.6
CPSF3-202ENST00000460593 PLA2G10O15496 165 aa11.3□□□□□ -0.6
CPSF3-202ENST00000460593 NOS1APO75052 506 aaPredicted RBP11.3□□□□□ -0.6
CPSF3-202ENST00000460593 CDRT1O95170 752 aa11.3□□□□□ -0.6
CPSF3-202ENST00000460593 SNAI1O95863 264 aaPredicted RBP11.3□□□□□ -0.6
CPSF3-202ENST00000460593 PRLP01236 227 aa11.3□□□□□ -0.6
CPSF3-202ENST00000460593 SEMG1P04279 462 aa11.3□□□□□ -0.6
CPSF3-202ENST00000460593 GPC1P35052 558 aa11.3□□□□□ -0.6
CPSF3-202ENST00000460593 PBX3P40426 434 aa11.3□□□□□ -0.6
CPSF3-202ENST00000460593 KCNJ10P78508 379 aa11.3□□□□□ -0.6
CPSF3-202ENST00000460593 SPIBQ01892 262 aa11.3□□□□□ -0.6
CPSF3-202ENST00000460593 PPIGQ13427 754 aaKnown RBP eCLIP11.3□□□□□ -0.6
CPSF3-202ENST00000460593 LEXMQ3ZCV2 418 aa11.3□□□□□ -0.6
CPSF3-202ENST00000460593 TOR2AQ5JU69 321 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms