RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 SALL3Q9BXA9 1300 aa4.65□□□□□ -1.67
CCDC88A-209ENST00000456975 A0A1W2PQ45 241 aaPredicted RBP4.65□□□□□ -1.67
CCDC88A-209ENST00000456975 A0A1W2PQY0 241 aa4.65□□□□□ -1.67
CCDC88A-209ENST00000456975 ZNF839A8K0R7 811 aa4.65□□□□□ -1.67
CCDC88A-209ENST00000456975 FAM171A2A8MVW0 826 aa4.65□□□□□ -1.67
CCDC88A-209ENST00000456975 A8MXQ7 604 aa4.65□□□□□ -1.67
CCDC88A-209ENST00000456975 PTGES3LE9PB15 166 aa4.65□□□□□ -1.67
CCDC88A-209ENST00000456975 F2RL2O00254 374 aa4.65□□□□□ -1.67
CCDC88A-209ENST00000456975 NR5A2O00482 541 aa4.65□□□□□ -1.67
CCDC88A-209ENST00000456975 SLC16A3O15427 465 aaKnown RBP4.65□□□□□ -1.67
CCDC88A-209ENST00000456975 DFNA5O60443 496 aa4.65□□□□□ -1.67
CCDC88A-209ENST00000456975 CCNT2O60583 730 aaKnown RBP4.65□□□□□ -1.67
CCDC88A-209ENST00000456975 GATBO75879 557 aaKnown RBP4.65□□□□□ -1.67
CCDC88A-209ENST00000456975 ESRRBO95718 433 aa4.65□□□□□ -1.67
CCDC88A-209ENST00000456975 AGTP01019 485 aa4.65□□□□□ -1.67
CCDC88A-209ENST00000456975 IGHV2-70P01814 119 aa4.65□□□□□ -1.67
CCDC88A-209ENST00000456975 GLI4P10075 376 aa4.65□□□□□ -1.67
CCDC88A-209ENST00000456975 PRF1P14222 555 aa4.65□□□□□ -1.67
CCDC88A-209ENST00000456975 ETS1P14921 441 aa4.65□□□□□ -1.67
CCDC88A-209ENST00000456975 ERCC2P18074 760 aa4.65□□□□□ -1.67
CCDC88A-209ENST00000456975 XRCC1P18887 633 aaPredicted RBP4.65□□□□□ -1.67
CCDC88A-209ENST00000456975 CXCR5P32302 372 aa4.65□□□□□ -1.67
CCDC88A-209ENST00000456975 OMPP47874 163 aa4.65□□□□□ -1.67
CCDC88A-209ENST00000456975 FHITP49789 147 aa4.65□□□□□ -1.67
CCDC88A-209ENST00000456975 RAB13P51153 203 aa4.65□□□□□ -1.67
CCDC88A-209ENST00000456975 MAPK12P53778 367 aa4.65□□□□□ -1.67
CCDC88A-209ENST00000456975 ERVK-8P63133 956 aa4.65□□□□□ -1.67
CCDC88A-209ENST00000456975 ILF3Q12906 894 aaKnown RBP eCLIP4.65□□□□□ -1.671e-7■■□□□ 13
CCDC88A-209ENST00000456975 ZNHIT3Q15649 155 aaPredicted RBP4.65□□□□□ -1.67
CCDC88A-209ENST00000456975 MAN2A1Q16706 1144 aa4.65□□□□□ -1.67
CCDC88A-209ENST00000456975 TRIM16LQ309B1 348 aa4.65□□□□□ -1.67
CCDC88A-209ENST00000456975 PRRT3Q5FWE3 981 aa4.65□□□□□ -1.67
CCDC88A-209ENST00000456975 UBAP2Q5T6F2 1119 aaKnown RBP4.65□□□□□ -1.67
CCDC88A-209ENST00000456975 SULT1C3Q6IMI6 304 aa4.65□□□□□ -1.67
CCDC88A-209ENST00000456975 PRR23BQ6ZRT6 265 aa4.65□□□□□ -1.67
CCDC88A-209ENST00000456975 Q7L0L9 218 aa4.65□□□□□ -1.67
CCDC88A-209ENST00000456975 GDPD3Q7L5L3 318 aa4.65□□□□□ -1.67
CCDC88A-209ENST00000456975 AACSQ86V21 672 aa4.65□□□□□ -1.67
CCDC88A-209ENST00000456975 GLB1L2Q8IW92 636 aa4.65□□□□□ -1.67
CCDC88A-209ENST00000456975 ADHFE1Q8IWW8 467 aa4.65□□□□□ -1.67
CCDC88A-209ENST00000456975 ADGRF2Q8IZF7 708 aa4.65□□□□□ -1.67
CCDC88A-209ENST00000456975 CDK20Q8IZL9 346 aa4.65□□□□□ -1.67
CCDC88A-209ENST00000456975 FAM185AQ8N0U4 392 aa4.65□□□□□ -1.67
CCDC88A-209ENST00000456975 DEFB123Q8N688 67 aa4.65□□□□□ -1.67
CCDC88A-209ENST00000456975 METTL25Q8N6Q8 603 aa4.65□□□□□ -1.67
CCDC88A-209ENST00000456975 TERB1Q8NA31 727 aa4.65□□□□□ -1.67
CCDC88A-209ENST00000456975 IL17RCQ8NAC3 791 aa4.65□□□□□ -1.67
CCDC88A-209ENST00000456975 REPS2Q8NFH8 660 aa4.65□□□□□ -1.67
CCDC88A-209ENST00000456975 BEST2Q8NFU1 509 aa4.65□□□□□ -1.67
CCDC88A-209ENST00000456975 NDNFQ8TB73 568 aa4.65□□□□□ -1.67
CCDC88A-209ENST00000456975 PHOSPHO1Q8TCT1 267 aa4.65□□□□□ -1.67
CCDC88A-209ENST00000456975 BRIX1Q8TDN6 353 aaKnown RBP4.65□□□□□ -1.67
CCDC88A-209ENST00000456975 KBTBD7Q8WVZ9 684 aa4.65□□□□□ -1.67
CCDC88A-209ENST00000456975 KAT2AQ92830 837 aa4.65□□□□□ -1.67
CCDC88A-209ENST00000456975 BORCS5Q969J3 196 aa4.65□□□□□ -1.67
CCDC88A-209ENST00000456975 TP53INP1Q96A56 240 aa4.65□□□□□ -1.67
CCDC88A-209ENST00000456975 TESCQ96BS2 214 aa4.65□□□□□ -1.67
CCDC88A-209ENST00000456975 APOLD1Q96LR9 279 aa4.65□□□□□ -1.67
CCDC88A-209ENST00000456975 SAMD8Q96LT4 415 aa4.65□□□□□ -1.67
CCDC88A-209ENST00000456975 C10orf90Q96M02 699 aa4.65□□□□□ -1.67
CCDC88A-209ENST00000456975 ZBTB18Q99592 522 aa4.65□□□□□ -1.67
CCDC88A-209ENST00000456975 CITED1Q99966 193 aa4.65□□□□□ -1.67
CCDC88A-209ENST00000456975 SEMA3CQ99985 751 aa4.65□□□□□ -1.67
CCDC88A-209ENST00000456975 ZNF251Q9BRH9 671 aa4.65□□□□□ -1.67
CCDC88A-209ENST00000456975 GPR87Q9BY21 358 aa4.65□□□□□ -1.67
CCDC88A-209ENST00000456975 RNF32Q9H0A6 362 aa4.65□□□□□ -1.67
CCDC88A-209ENST00000456975 FBXO44Q9H4M3 255 aa4.65□□□□□ -1.67
CCDC88A-209ENST00000456975 MAGEF1Q9HAY2 307 aa4.65□□□□□ -1.67
CCDC88A-209ENST00000456975 LRRC4Q9HBW1 653 aa4.65□□□□□ -1.67
CCDC88A-209ENST00000456975 RAVER2Q9HCJ3 691 aaKnown RBP4.65□□□□□ -1.67
CCDC88A-209ENST00000456975 CNIH4Q9P003 139 aa4.65□□□□□ -1.67
CCDC88A-209ENST00000456975 CHKBQ9Y259 395 aa4.65□□□□□ -1.67
CCDC88A-209ENST00000456975 STK36Q9NRP7 1315 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 A0A1W2PPC1 479 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 ZNF213O14771 459 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 SLC22A2O15244 555 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 INSIG1O15503 277 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 SUV39H1O43463 412 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 AKAP8O43823 692 aaKnown RBP4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 GH2P01242 217 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 FGBP02675 491 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 IFNA6P05013 189 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 F13BP05160 661 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 CRHP06850 196 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 HCKP08631 526 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 ADRB3P13945 408 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 NDUFB7P17568 137 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 PTPN3P26045 913 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 ACVR2AP27037 513 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 GABRB3P28472 473 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 GCH1P30793 250 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 RORAP35398 523 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 BMPR1AP36894 532 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 SLC6A11P48066 632 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 CARSP49589 748 aaKnown RBP4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 CEBPDP49716 269 aaPredicted RBP4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 PER3P56645 1201 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 LRRC63Q05C16 580 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 TSPAN31Q12999 210 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 SLC12A1Q13621 1099 aa4.64□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms