RNA–Protein interactions for RNA: ENST00000453046.5

SQSTM1-204, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 572 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-204ENST00000453046 CEACAM4O75871 244 aa17.22■□□□□ 0.35
SQSTM1-204ENST00000453046 IGHEP01854 428 aa17.22■□□□□ 0.35
SQSTM1-204ENST00000453046 DHRS4L1P0CG22 281 aa17.22■□□□□ 0.35
SQSTM1-204ENST00000453046 PIM1P11309 404 aaPredicted RBP17.22■□□□□ 0.35
SQSTM1-204ENST00000453046 PSMB5P28074 263 aa17.22■□□□□ 0.35
SQSTM1-204ENST00000453046 ETV4P43268 484 aa17.22■□□□□ 0.35
SQSTM1-204ENST00000453046 RAPSNQ13702 412 aa17.22■□□□□ 0.35
SQSTM1-204ENST00000453046 GRM7Q14831 915 aa17.22■□□□□ 0.35
SQSTM1-204ENST00000453046 LRRC8EQ6NSJ5 796 aa17.22■□□□□ 0.35
SQSTM1-204ENST00000453046 MRGPREQ86SM8 312 aa17.22■□□□□ 0.35
SQSTM1-204ENST00000453046 PLD6Q8N2A8 252 aaKnown RBP17.22■□□□□ 0.35
SQSTM1-204ENST00000453046 CLEC1AQ8NC01 280 aa17.22■□□□□ 0.35
SQSTM1-204ENST00000453046 INPP5DQ92835 1189 aa17.22■□□□□ 0.35
SQSTM1-204ENST00000453046 MIB2Q96AX9 1013 aa17.22■□□□□ 0.35
SQSTM1-204ENST00000453046 PTERQ96BW5 349 aa17.22■□□□□ 0.35
SQSTM1-204ENST00000453046 FAM111AQ96PZ2 611 aa17.22■□□□□ 0.35
SQSTM1-204ENST00000453046 DERL2Q9GZP9 239 aa17.22■□□□□ 0.35
SQSTM1-204ENST00000453046 IGSF5Q9NSI5 407 aa17.22■□□□□ 0.35
SQSTM1-204ENST00000453046 CUTCQ9NTM9 273 aa17.22■□□□□ 0.35
SQSTM1-204ENST00000453046 TNRC6AQ8NDV7 1962 aaKnown RBP17.21■□□□□ 0.35
SQSTM1-204ENST00000453046 PRICKLE3O43900 615 aaPredicted RBP17.21■□□□□ 0.35
SQSTM1-204ENST00000453046 PLIN3O60664 434 aa17.21■□□□□ 0.35
SQSTM1-204ENST00000453046 MATN4O95460 622 aa17.21■□□□□ 0.35
SQSTM1-204ENST00000453046 CCDC166P0CW27 439 aa17.21■□□□□ 0.35
SQSTM1-204ENST00000453046 RGS4P49798 205 aa17.21■□□□□ 0.35
SQSTM1-204ENST00000453046 PGGT1BP53609 377 aa17.21■□□□□ 0.35
SQSTM1-204ENST00000453046 ATP6V0D1P61421 351 aa17.21■□□□□ 0.35
SQSTM1-204ENST00000453046 TSTA3Q13630 321 aaPredicted RBP17.21■□□□□ 0.35
SQSTM1-204ENST00000453046 CSHL1Q14406 222 aa17.21■□□□□ 0.35
SQSTM1-204ENST00000453046 CYP2A13Q16696 494 aa17.21■□□□□ 0.35
SQSTM1-204ENST00000453046 FAM214AQ32MH5 1076 aa17.21■□□□□ 0.35
SQSTM1-204ENST00000453046 TUBB8Q3ZCM7 444 aa17.21■□□□□ 0.35
SQSTM1-204ENST00000453046 NADK2Q4G0N4 442 aa17.21■□□□□ 0.35
SQSTM1-204ENST00000453046 YOD1Q5VVQ6 348 aaPredicted RBP17.21■□□□□ 0.35
SQSTM1-204ENST00000453046 MRPL14Q6P1L8 145 aaKnown RBP17.21■□□□□ 0.35
SQSTM1-204ENST00000453046 PAQR3Q6TCH7 311 aa17.21■□□□□ 0.35
SQSTM1-204ENST00000453046 TMEM207Q6UWW9 146 aa17.21■□□□□ 0.35
SQSTM1-204ENST00000453046 HMGCLL1Q8TB92 370 aa17.21■□□□□ 0.35
SQSTM1-204ENST00000453046 MGARPQ8TDB4 240 aa17.21■□□□□ 0.35
SQSTM1-204ENST00000453046 NUDT9Q9BW91 350 aa17.21■□□□□ 0.35
SQSTM1-204ENST00000453046 ACAT2Q9BWD1 397 aa17.21■□□□□ 0.35
SQSTM1-204ENST00000453046 NMRAL1Q9HBL8 299 aa17.21■□□□□ 0.35
SQSTM1-204ENST00000453046 SLC17A7Q9P2U7 560 aa17.21■□□□□ 0.35
SQSTM1-204ENST00000453046 EMCNQ9ULC0 261 aa17.21■□□□□ 0.35
SQSTM1-204ENST00000453046 DSCR3O14972 297 aa17.2■□□□□ 0.34
SQSTM1-204ENST00000453046 SRPX2O60687 465 aaPredicted RBP17.2■□□□□ 0.34
SQSTM1-204ENST00000453046 VPS4BO75351 444 aa17.2■□□□□ 0.34
SQSTM1-204ENST00000453046 CATP04040 527 aaKnown RBP17.2■□□□□ 0.34
SQSTM1-204ENST00000453046 PROCP04070 461 aa17.2■□□□□ 0.34
SQSTM1-204ENST00000453046 ENO3P13929 434 aaPredicted RBP17.2■□□□□ 0.34
SQSTM1-204ENST00000453046 CMPK1P30085 196 aa17.2■□□□□ 0.34
SQSTM1-204ENST00000453046 GMPRP36959 345 aa17.2■□□□□ 0.34
SQSTM1-204ENST00000453046 MDH1P40925 334 aaKnown RBP17.2■□□□□ 0.34
SQSTM1-204ENST00000453046 WDR4P57081 412 aaKnown RBP17.2■□□□□ 0.34
SQSTM1-204ENST00000453046 FOXL2P58012 376 aa17.2■□□□□ 0.34
SQSTM1-204ENST00000453046 VSX2P58304 361 aaPredicted RBP17.2■□□□□ 0.34
SQSTM1-204ENST00000453046 IL2P60568 153 aa17.2■□□□□ 0.34
SQSTM1-204ENST00000453046 DLG1Q12959 904 aa17.2■□□□□ 0.34
SQSTM1-204ENST00000453046 GBX1Q14549 363 aa17.2■□□□□ 0.34
SQSTM1-204ENST00000453046 NAA25Q14CX7 972 aa17.2■□□□□ 0.34
SQSTM1-204ENST00000453046 ACSBG2Q5FVE4 666 aa17.2■□□□□ 0.34
SQSTM1-204ENST00000453046 HHATQ5VTY9 493 aa17.2■□□□□ 0.34
SQSTM1-204ENST00000453046 HPS6Q86YV9 775 aa17.2■□□□□ 0.34
SQSTM1-204ENST00000453046 CPNE9Q8IYJ1 553 aa17.2■□□□□ 0.34
SQSTM1-204ENST00000453046 OR2L3Q8NG85 312 aa17.2■□□□□ 0.34
SQSTM1-204ENST00000453046 OR2A1Q8NGT9 310 aa17.2■□□□□ 0.34
SQSTM1-204ENST00000453046 OR9A1PQ8NGU1 263 aa17.2■□□□□ 0.34
SQSTM1-204ENST00000453046 RDH11Q8TC12 318 aa17.2■□□□□ 0.34
SQSTM1-204ENST00000453046 CPT1CQ8TCG5 803 aa17.2■□□□□ 0.34
SQSTM1-204ENST00000453046 ANKRD49Q8WVL7 239 aa17.2■□□□□ 0.34
SQSTM1-204ENST00000453046 NXNL1Q96CM4 212 aa17.2■□□□□ 0.34
SQSTM1-204ENST00000453046 LINGO1Q96FE5 620 aa17.2■□□□□ 0.34
SQSTM1-204ENST00000453046 PDLIM5Q96HC4 596 aaKnown RBP17.2■□□□□ 0.34
SQSTM1-204ENST00000453046 GPR78Q96P69 363 aa17.2■□□□□ 0.34
SQSTM1-204ENST00000453046 SLC30A3Q99726 388 aa17.2■□□□□ 0.34
SQSTM1-204ENST00000453046 MFRPQ9BY79 579 aa17.2■□□□□ 0.34
SQSTM1-204ENST00000453046 P4HTMQ9NXG6 502 aa17.2■□□□□ 0.34
SQSTM1-204ENST00000453046 TMEM216Q9P0N5 145 aa17.2■□□□□ 0.34
SQSTM1-204ENST00000453046 GALPQ9UBC7 116 aa17.2■□□□□ 0.34
SQSTM1-204ENST00000453046 XPR1Q9UBH6 696 aa17.2■□□□□ 0.34
SQSTM1-204ENST00000453046 VPS4AQ9UN37 437 aa17.2■□□□□ 0.34
SQSTM1-204ENST00000453046 HECTD1Q9ULT8 2610 aa17.2■□□□□ 0.34
SQSTM1-204ENST00000453046 A0A0J9YVX5 310 aa17.19■□□□□ 0.34
SQSTM1-204ENST00000453046 CTSVO60911 334 aa17.19■□□□□ 0.34
SQSTM1-204ENST00000453046 CNOT3O75175 753 aaKnown RBP17.19■□□□□ 0.34
SQSTM1-204ENST00000453046 TSPAN12O95859 305 aa17.19■□□□□ 0.34
SQSTM1-204ENST00000453046 EIF2S1P05198 315 aaKnown RBP17.19■□□□□ 0.34
SQSTM1-204ENST00000453046 RBP1P09455 135 aa17.19■□□□□ 0.34
SQSTM1-204ENST00000453046 CD1DP15813 335 aa17.19■□□□□ 0.34
SQSTM1-204ENST00000453046 SERPINB4P48594 390 aa17.19■□□□□ 0.34
SQSTM1-204ENST00000453046 UBAP2LQ14157 1087 aaKnown RBP17.19■□□□□ 0.34
SQSTM1-204ENST00000453046 FASTKQ14296 549 aaKnown RBP17.19■□□□□ 0.34
SQSTM1-204ENST00000453046 ACAP2Q15057 778 aa17.19■□□□□ 0.34
SQSTM1-204ENST00000453046 TECRLQ5HYJ1 363 aa17.19■□□□□ 0.34
SQSTM1-204ENST00000453046 DCAF10Q5QP82 559 aa17.19■□□□□ 0.34
SQSTM1-204ENST00000453046 WASHC2DQ5SRD0 308 aa17.19■□□□□ 0.34
SQSTM1-204ENST00000453046 OVCH1Q7RTY7 1134 aa17.19■□□□□ 0.34
SQSTM1-204ENST00000453046 DYDC1Q8WWB3 177 aa17.19■□□□□ 0.34
SQSTM1-204ENST00000453046 SMPDL3AQ92484 453 aa17.19■□□□□ 0.34
SQSTM1-204ENST00000453046 FKBP10Q96AY3 582 aa17.19■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms