RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 COCHO43405 550 aa16.68■□□□□ 0.26
PTPRF-209ENST00000438120 PRAMEF11O60813 436 aa16.68■□□□□ 0.26
PTPRF-209ENST00000438120 STK19P49842 368 aaPredicted RBP16.68■□□□□ 0.26
PTPRF-209ENST00000438120 EOGTQ5NDL2 527 aa16.68■□□□□ 0.26
PTPRF-209ENST00000438120 FAM72AQ5TYM5 149 aa16.68■□□□□ 0.26
PTPRF-209ENST00000438120 FAM72DQ6L9T8 149 aa16.68■□□□□ 0.26
PTPRF-209ENST00000438120 FAM72BQ86X60 149 aa16.68■□□□□ 0.26
PTPRF-209ENST00000438120 NPY6RQ99463 290 aa16.68■□□□□ 0.26
PTPRF-209ENST00000438120 GPR22Q99680 433 aa16.68■□□□□ 0.26
PTPRF-209ENST00000438120 BARD1Q99728 777 aaKnown RBP16.68■□□□□ 0.26
PTPRF-209ENST00000438120 MAGEE1Q9HCI5 957 aa16.68■□□□□ 0.26
PTPRF-209ENST00000438120 RBM47A0AV96 593 aaKnown RBP16.68■□□□□ 0.26
PTPRF-209ENST00000438120 ABLIM1O14639 778 aa16.68■□□□□ 0.26
PTPRF-209ENST00000438120 ZNF30P17039 623 aa16.68■□□□□ 0.26
PTPRF-209ENST00000438120 ARFRP1Q13795 201 aa16.68■□□□□ 0.26
PTPRF-209ENST00000438120 PRRT3Q5FWE3 981 aa16.68■□□□□ 0.26
PTPRF-209ENST00000438120 TMEM164Q5U3C3 297 aa16.68■□□□□ 0.26
PTPRF-209ENST00000438120 CEP97Q8IW35 865 aa16.68■□□□□ 0.26
PTPRF-209ENST00000438120 YIPF7Q8N8F6 280 aa16.68■□□□□ 0.26
PTPRF-209ENST00000438120 AQP11Q8NBQ7 271 aa16.68■□□□□ 0.26
PTPRF-209ENST00000438120 DNAJA4Q8WW22 397 aaPredicted RBP16.68■□□□□ 0.26
PTPRF-209ENST00000438120 CNDP2Q96KP4 475 aaKnown RBP16.68■□□□□ 0.26
PTPRF-209ENST00000438120 CCDC115Q96NT0 180 aa16.68■□□□□ 0.26
PTPRF-209ENST00000438120 TTYH1Q9H313 450 aaPredicted RBP16.68■□□□□ 0.26
PTPRF-209ENST00000438120 FBRSL1Q9HCM7 1045 aaKnown RBP16.68■□□□□ 0.26
PTPRF-209ENST00000438120 ZIM2Q9NZV7 527 aa16.68■□□□□ 0.26
PTPRF-209ENST00000438120 SMIM30A4D0T7 59 aa16.68■□□□□ 0.26
PTPRF-209ENST00000438120 AQP12BA6NM10 295 aa16.68■□□□□ 0.26
PTPRF-209ENST00000438120 CDC123O75794 336 aaPredicted RBP16.68■□□□□ 0.26
PTPRF-209ENST00000438120 MARCH9Q86YJ5 346 aa16.68■□□□□ 0.26
PTPRF-209ENST00000438120 AQP12AQ8IXF9 295 aa16.68■□□□□ 0.26
PTPRF-209ENST00000438120 SH3D21A4FU49 640 aa16.67■□□□□ 0.26
PTPRF-209ENST00000438120 ZNF860A6NHJ4 632 aa16.67■□□□□ 0.26
PTPRF-209ENST00000438120 J3QLW9 94 aa16.67■□□□□ 0.26
PTPRF-209ENST00000438120 TBX10O75333 385 aa16.67■□□□□ 0.26
PTPRF-209ENST00000438120 GATBO75879 557 aaKnown RBP16.67■□□□□ 0.26
PTPRF-209ENST00000438120 CBSLP0DN79 551 aa16.67■□□□□ 0.26
PTPRF-209ENST00000438120 ZNF19P17023 458 aa16.67■□□□□ 0.26
PTPRF-209ENST00000438120 CBSP35520 551 aa16.67■□□□□ 0.26
PTPRF-209ENST00000438120 SERINC3Q13530 473 aa16.67■□□□□ 0.26
PTPRF-209ENST00000438120 BLMHQ13867 455 aa16.67■□□□□ 0.26
PTPRF-209ENST00000438120 OR2T5Q6IEZ7 315 aa16.67■□□□□ 0.26
PTPRF-209ENST00000438120 C1orf94Q6P1W5 598 aa16.67■□□□□ 0.26
PTPRF-209ENST00000438120 AMIGO3Q86WK7 504 aa16.67■□□□□ 0.26
PTPRF-209ENST00000438120 OR2T29Q8NH02 315 aa16.67■□□□□ 0.26
PTPRF-209ENST00000438120 SUN3Q8TAQ9 357 aa16.67■□□□□ 0.26
PTPRF-209ENST00000438120 THEM6Q8WUY1 208 aa16.67■□□□□ 0.26
PTPRF-209ENST00000438120 C17orf62Q9BQA9 187 aa16.67■□□□□ 0.26
PTPRF-209ENST00000438120 TNFRSF10DQ9UBN6 386 aa16.67■□□□□ 0.26
PTPRF-209ENST00000438120 KMOO15229 486 aa16.67■□□□□ 0.26
PTPRF-209ENST00000438120 ETV3P41162 512 aa16.67■□□□□ 0.26
PTPRF-209ENST00000438120 STON2Q8WXE9 905 aa16.67■□□□□ 0.26
PTPRF-209ENST00000438120 SCAMP4Q969E2 229 aa16.67■□□□□ 0.26
PTPRF-209ENST00000438120 HSH2DQ96JZ2 352 aa16.67■□□□□ 0.26
PTPRF-209ENST00000438120 TM9SF2Q99805 663 aa16.67■□□□□ 0.26
PTPRF-209ENST00000438120 GRID2O43424 1007 aa16.67■□□□□ 0.26
PTPRF-209ENST00000438120 MATN1P21941 496 aa16.67■□□□□ 0.26
PTPRF-209ENST00000438120 LASP1Q14847 261 aaKnown RBP16.67■□□□□ 0.26
PTPRF-209ENST00000438120 TGFBIQ15582 683 aa16.67■□□□□ 0.26
PTPRF-209ENST00000438120 AMIGO1Q86WK6 493 aa16.67■□□□□ 0.26
PTPRF-209ENST00000438120 SIAH1Q8IUQ4 282 aa16.67■□□□□ 0.26
PTPRF-209ENST00000438120 OR4K17Q8NGC6 315 aa16.67■□□□□ 0.26
PTPRF-209ENST00000438120 OR4K1Q8NGD4 311 aa16.67■□□□□ 0.26
PTPRF-209ENST00000438120 HERC2P3Q9BVR0 1158 aa16.67■□□□□ 0.26
PTPRF-209ENST00000438120 DERL2Q9GZP9 239 aa16.67■□□□□ 0.26
PTPRF-209ENST00000438120 TELO2Q9Y4R8 837 aa16.67■□□□□ 0.26
PTPRF-209ENST00000438120 MYOM1P52179 1685 aa16.67■□□□□ 0.26
PTPRF-209ENST00000438120 LEFTY1O75610 366 aa16.67■□□□□ 0.26
PTPRF-209ENST00000438120 SOD2P04179 222 aa16.67■□□□□ 0.26
PTPRF-209ENST00000438120 DCDC1P59894 354 aa16.67■□□□□ 0.26
PTPRF-209ENST00000438120 RNF130Q86XS8 419 aa16.67■□□□□ 0.26
PTPRF-209ENST00000438120 GALNT15Q8N3T1 639 aa16.67■□□□□ 0.26
PTPRF-209ENST00000438120 RAB8BQ92930 207 aa16.67■□□□□ 0.26
PTPRF-209ENST00000438120 SH3YL1Q96HL8 342 aaPredicted RBP16.67■□□□□ 0.26
PTPRF-209ENST00000438120 ZNF224Q9NZL3 707 aa16.67■□□□□ 0.26
PTPRF-209ENST00000438120 CCDC59Q9P031 241 aaKnown RBP16.67■□□□□ 0.26
PTPRF-209ENST00000438120 C2orf92A0A1B0GVN3 265 aa16.67■□□□□ 0.26
PTPRF-209ENST00000438120 A0A1W2PRQ8 180 aa16.67■□□□□ 0.26
PTPRF-209ENST00000438120 CDKL1Q00532 357 aa16.67■□□□□ 0.26
PTPRF-209ENST00000438120 DGLUCYQ7Z3D6 616 aa16.67■□□□□ 0.26
PTPRF-209ENST00000438120 PLD6Q8N2A8 252 aaKnown RBP16.67■□□□□ 0.26
PTPRF-209ENST00000438120 C12orf76Q8N812 135 aaPredicted RBP16.67■□□□□ 0.26
PTPRF-209ENST00000438120 PKP2Q99959 881 aa16.67■□□□□ 0.26
PTPRF-209ENST00000438120 TPT1P8Q9HAU6 139 aa16.67■□□□□ 0.26
PTPRF-209ENST00000438120 PCDHB11Q9Y5F2 797 aa16.67■□□□□ 0.26
PTPRF-209ENST00000438120 C5orf51A6NDU8 294 aa16.66■□□□□ 0.26
PTPRF-209ENST00000438120 CCNOP22674 350 aa16.66■□□□□ 0.26
PTPRF-209ENST00000438120 MLLT10P55197 1068 aa16.66■□□□□ 0.26
PTPRF-209ENST00000438120 TMEM115Q12893 351 aaPredicted RBP16.66■□□□□ 0.26
PTPRF-209ENST00000438120 KLHL26Q53HC5 615 aa16.66■□□□□ 0.26
PTPRF-209ENST00000438120 RBM48Q5RL73 367 aaKnown RBP16.66■□□□□ 0.26
PTPRF-209ENST00000438120 RASGEF1AQ8N9B8 481 aa16.66■□□□□ 0.26
PTPRF-209ENST00000438120 DCAF4L2Q8NA75 395 aa16.66■□□□□ 0.26
PTPRF-209ENST00000438120 Q9N2J8 555 aa16.66■□□□□ 0.26
PTPRF-209ENST00000438120 THUMPD1Q9NXG2 353 aaKnown RBP16.66■□□□□ 0.26
PTPRF-209ENST00000438120 UPB1Q9UBR1 384 aa16.66■□□□□ 0.26
PTPRF-209ENST00000438120 H7BY64 318 aa16.66■□□□□ 0.26
PTPRF-209ENST00000438120 BEST1O76090 585 aa16.66■□□□□ 0.26
PTPRF-209ENST00000438120 PAK4O96013 591 aaPredicted RBP16.66■□□□□ 0.26
PTPRF-209ENST00000438120 OAS1P00973 400 aaKnown RBP16.66■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms