RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 RAB11FIP5Q9BXF6 653 aa11.68□□□□□ -0.54
PTPRF-208ENST00000437607 ERVK-6Q9BXR3 956 aa11.68□□□□□ -0.54
PTPRF-208ENST00000437607 TWSG1Q9GZX9 223 aa11.68□□□□□ -0.54
PTPRF-208ENST00000437607 RAB33BQ9H082 229 aa11.68□□□□□ -0.54
PTPRF-208ENST00000437607 NSRP1Q9H0G5 558 aaKnown RBP11.68□□□□□ -0.54
PTPRF-208ENST00000437607 CCDC134Q9H6E4 229 aa11.68□□□□□ -0.54
PTPRF-208ENST00000437607 MVB12BQ9H7P6 319 aa11.68□□□□□ -0.54
PTPRF-208ENST00000437607 MANSC1Q9H8J5 431 aa11.68□□□□□ -0.54
PTPRF-208ENST00000437607 LHX9Q9NQ69 397 aa11.68□□□□□ -0.54
PTPRF-208ENST00000437607 POT1Q9NUX5 634 aa11.68□□□□□ -0.54
PTPRF-208ENST00000437607 SPATA7Q9P0W8 599 aa11.68□□□□□ -0.54
PTPRF-208ENST00000437607 SEMA5BQ9P283 1151 aa11.68□□□□□ -0.54
PTPRF-208ENST00000437607 EPHA6Q9UF33 1036 aa11.68□□□□□ -0.54
PTPRF-208ENST00000437607 LNPEPQ9UIQ6 1025 aa11.68□□□□□ -0.54
PTPRF-208ENST00000437607 TDRKHQ9Y2W6 561 aaKnown RBP11.68□□□□□ -0.54
PTPRF-208ENST00000437607 TNPO3Q9Y5L0 923 aaKnown RBP11.68□□□□□ -0.54
PTPRF-208ENST00000437607 PCM1Q15154 2024 aa11.68□□□□□ -0.54
PTPRF-208ENST00000437607 TMEM114B3SHH9 223 aa11.67□□□□□ -0.54
PTPRF-208ENST00000437607 MYO1CO00159 1063 aa11.67□□□□□ -0.54
PTPRF-208ENST00000437607 KLF11O14901 512 aa11.67□□□□□ -0.54
PTPRF-208ENST00000437607 KLK8O60259 260 aa11.67□□□□□ -0.54
PTPRF-208ENST00000437607 RPS17P08708 135 aaKnown RBP11.67□□□□□ -0.54
PTPRF-208ENST00000437607 FOLR1P15328 257 aa11.67□□□□□ -0.54
PTPRF-208ENST00000437607 LSP1P33241 339 aa11.67□□□□□ -0.54
PTPRF-208ENST00000437607 SERPINB5P36952 375 aa11.67□□□□□ -0.54
PTPRF-208ENST00000437607 PIK3CGP48736 1102 aa11.67□□□□□ -0.54
PTPRF-208ENST00000437607 RPS18P62269 152 aaKnown RBP11.67□□□□□ -0.54
PTPRF-208ENST00000437607 STX3Q13277 289 aa11.67□□□□□ -0.54
PTPRF-208ENST00000437607 RCN2Q14257 317 aa11.67□□□□□ -0.54
PTPRF-208ENST00000437607 KCNAB1Q14722 419 aa11.67□□□□□ -0.54
PTPRF-208ENST00000437607 RPE65Q16518 533 aa11.67□□□□□ -0.54
PTPRF-208ENST00000437607 PWWP2BQ6NUJ5 590 aa11.67□□□□□ -0.54
PTPRF-208ENST00000437607 IRGCQ6NXR0 463 aa11.67□□□□□ -0.54
PTPRF-208ENST00000437607 RGS9BPQ6ZS82 235 aa11.67□□□□□ -0.54
PTPRF-208ENST00000437607 LRRC70Q7Z2Q7 622 aa11.67□□□□□ -0.54
PTPRF-208ENST00000437607 PPP1R3BQ86XI6 285 aa11.67□□□□□ -0.54
PTPRF-208ENST00000437607 APLFQ8IW19 511 aaPredicted RBP11.67□□□□□ -0.54
PTPRF-208ENST00000437607 SYTL1Q8IYJ3 562 aa11.67□□□□□ -0.54
PTPRF-208ENST00000437607 OR9A1PQ8NGU1 263 aa11.67□□□□□ -0.54
PTPRF-208ENST00000437607 ZNF75CPQ92670 426 aaPredicted RBP11.67□□□□□ -0.54
PTPRF-208ENST00000437607 RAD51AP1Q96B01 352 aa11.67□□□□□ -0.54
PTPRF-208ENST00000437607 RHBDF1Q96CC6 855 aa11.67□□□□□ -0.54
PTPRF-208ENST00000437607 FBXL8Q96CD0 374 aa11.67□□□□□ -0.54
PTPRF-208ENST00000437607 L3HYPDHQ96EM0 354 aa11.67□□□□□ -0.54
PTPRF-208ENST00000437607 SLC41A2Q96JW4 573 aa11.67□□□□□ -0.54
PTPRF-208ENST00000437607 CCDC138Q96M89 665 aa11.67□□□□□ -0.54
PTPRF-208ENST00000437607 FERD3LQ96RJ6 166 aa11.67□□□□□ -0.54
PTPRF-208ENST00000437607 INSM2Q96T92 566 aaPredicted RBP11.67□□□□□ -0.54
PTPRF-208ENST00000437607 TMEM79Q9BSE2 394 aa11.67□□□□□ -0.54
PTPRF-208ENST00000437607 ACTL8Q9H568 366 aa11.67□□□□□ -0.54
PTPRF-208ENST00000437607 OPTCQ9UBM4 332 aa11.67□□□□□ -0.54
PTPRF-208ENST00000437607 POLG2Q9UHN1 485 aa11.67□□□□□ -0.54
PTPRF-208ENST00000437607 KCND3Q9UK17 655 aa11.67□□□□□ -0.54
PTPRF-208ENST00000437607 ADAM21Q9UKJ8 722 aa11.67□□□□□ -0.54
PTPRF-208ENST00000437607 PADI1Q9ULC6 663 aa11.67□□□□□ -0.54
PTPRF-208ENST00000437607 ANGPTL3Q9Y5C1 460 aa11.67□□□□□ -0.54
PTPRF-208ENST00000437607 COLEC10Q9Y6Z7 277 aa11.67□□□□□ -0.54
PTPRF-208ENST00000437607 PIPSLA2A3N6 862 aa11.66□□□□□ -0.54
PTPRF-208ENST00000437607 TCP11X1B4DZS4 312 aa11.66□□□□□ -0.54
PTPRF-208ENST00000437607 NPHS1O60500 1241 aa11.66□□□□□ -0.54
PTPRF-208ENST00000437607 CCNT2O60583 730 aaKnown RBP11.66□□□□□ -0.54
PTPRF-208ENST00000437607 SUPT7LO94864 414 aa11.66□□□□□ -0.54
PTPRF-208ENST00000437607 HSPA4LO95757 839 aa11.66□□□□□ -0.54
PTPRF-208ENST00000437607 RECKO95980 971 aa11.66□□□□□ -0.54
PTPRF-208ENST00000437607 VIMP08670 466 aaKnown RBP11.66□□□□□ -0.54
PTPRF-208ENST00000437607 CCNYL3P0C7X3 344 aa11.66□□□□□ -0.54
PTPRF-208ENST00000437607 ARL1P40616 181 aaPredicted RBP11.66□□□□□ -0.54
PTPRF-208ENST00000437607 KCNC1P48547 511 aa11.66□□□□□ -0.54
PTPRF-208ENST00000437607 HSPA7P48741 367 aa11.66□□□□□ -0.54
PTPRF-208ENST00000437607 NAGLUP54802 743 aa11.66□□□□□ -0.54
PTPRF-208ENST00000437607 BST1Q10588 318 aa11.66□□□□□ -0.54
PTPRF-208ENST00000437607 PLCL1Q15111 1095 aa11.66□□□□□ -0.54
PTPRF-208ENST00000437607 FBXO48Q5FWF7 155 aa11.66□□□□□ -0.54
PTPRF-208ENST00000437607 ZNF678Q5SXM1 525 aa11.66□□□□□ -0.54
PTPRF-208ENST00000437607 CPZQ66K79 652 aa11.66□□□□□ -0.54
PTPRF-208ENST00000437607 METTL2BQ6P1Q9 378 aaKnown RBP11.66□□□□□ -0.54
PTPRF-208ENST00000437607 FAM199XQ6PEV8 388 aaPredicted RBP11.66□□□□□ -0.54
PTPRF-208ENST00000437607 FRMD7Q6ZUT3 714 aa11.66□□□□□ -0.54
PTPRF-208ENST00000437607 ATCAYQ86WG3 371 aa11.66□□□□□ -0.54
PTPRF-208ENST00000437607 RBM12BQ8IXT5 1001 aaKnown RBP11.66□□□□□ -0.54
PTPRF-208ENST00000437607 PHC3Q8NDX5 983 aa11.66□□□□□ -0.54
PTPRF-208ENST00000437607 ZDHHC12Q96GR4 267 aa11.66□□□□□ -0.54
PTPRF-208ENST00000437607 PKP4Q99569 1192 aa11.66□□□□□ -0.54
PTPRF-208ENST00000437607 TRMOQ9BU70 441 aa11.66□□□□□ -0.54
PTPRF-208ENST00000437607 GATA5Q9BWX5 397 aaPredicted RBP11.66□□□□□ -0.54
PTPRF-208ENST00000437607 STOX2Q9P2F5 926 aaPredicted RBP11.66□□□□□ -0.54
PTPRF-208ENST00000437607 CIDEBQ9UHD4 219 aa11.66□□□□□ -0.54
PTPRF-208ENST00000437607 STK38LQ9Y2H1 464 aa11.66□□□□□ -0.54
PTPRF-208ENST00000437607 KRT87PA6NCN2 255 aa11.65□□□□□ -0.54
PTPRF-208ENST00000437607 C21orf140B9A014 251 aa11.65□□□□□ -0.54
PTPRF-208ENST00000437607 STK16O75716 305 aa11.65□□□□□ -0.54
PTPRF-208ENST00000437607 WDR47O94967 919 aa11.65□□□□□ -0.54
PTPRF-208ENST00000437607 SNUPNO95149 360 aaKnown RBP11.65□□□□□ -0.54
PTPRF-208ENST00000437607 SIX3O95343 332 aaPredicted RBP11.65□□□□□ -0.54
PTPRF-208ENST00000437607 SLC16A8O95907 504 aa11.65□□□□□ -0.54
PTPRF-208ENST00000437607 EBLN1P0CF75 366 aa11.65□□□□□ -0.54
PTPRF-208ENST00000437607 RNF224P0DH78 156 aa11.65□□□□□ -0.54
PTPRF-208ENST00000437607 IMPDH1P20839 514 aa11.65□□□□□ -0.54
PTPRF-208ENST00000437607 GNLYP22749 145 aa11.65□□□□□ -0.54
PTPRF-208ENST00000437607 IMPA1P29218 277 aa11.65□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms