RNA–Protein interactions for RNA: ENST00000430118.1

HMGB3-203, Transcript of high mobility group box 3, humanhuman

TSL 1 (best)

Gene HMGB3, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-203ENST00000430118 CACNA1HO95180 2353 aa3.91□□□□□ -1.78
HMGB3-203ENST00000430118 ARHGEF17Q96PE2 2063 aaPredicted RBP3.91□□□□□ -1.78
HMGB3-203ENST00000430118 ZNF532Q9HCE3 1301 aa3.91□□□□□ -1.78
HMGB3-203ENST00000430118 MCM3APO60318 1980 aa3.91□□□□□ -1.78
HMGB3-203ENST00000430118 ASPMQ8IZT6 3477 aa3.9□□□□□ -1.78
HMGB3-203ENST00000430118 FAM186AA6NE01 2351 aa3.9□□□□□ -1.78
HMGB3-203ENST00000430118 CFAP47Q6ZTR5 3102 aa3.9□□□□□ -1.79
HMGB3-203ENST00000430118 A0A1W2PP11 408 aa3.9□□□□□ -1.79
HMGB3-203ENST00000430118 SDR42E2A6NKP2 422 aa3.9□□□□□ -1.79
HMGB3-203ENST00000430118 C15orf62A8K5M9 175 aa3.9□□□□□ -1.79
HMGB3-203ENST00000430118 HEPACAM2A8MVW5 462 aa3.9□□□□□ -1.79
HMGB3-203ENST00000430118 M0QZ92 97 aa3.9□□□□□ -1.79
HMGB3-203ENST00000430118 LIN7AO14910 233 aaPredicted RBP3.9□□□□□ -1.79
HMGB3-203ENST00000430118 TIMM23O14925 209 aa3.9□□□□□ -1.79
HMGB3-203ENST00000430118 PGRMC2O15173 223 aa3.9□□□□□ -1.79
HMGB3-203ENST00000430118 ZBTB43O43298 467 aa3.9□□□□□ -1.79
HMGB3-203ENST00000430118 ZBTB14O43829 449 aa3.9□□□□□ -1.79
HMGB3-203ENST00000430118 NDUFS7O75251 213 aa3.9□□□□□ -1.79
HMGB3-203ENST00000430118 RFPL2O75678 378 aa3.9□□□□□ -1.79
HMGB3-203ENST00000430118 MOCS3O95396 460 aa3.9□□□□□ -1.79
HMGB3-203ENST00000430118 LDLRP01130 860 aa3.9□□□□□ -1.79
HMGB3-203ENST00000430118 CCDC159P0C7I6 412 aa3.9□□□□□ -1.79
HMGB3-203ENST00000430118 PNMA6AP0CW24 399 aaPredicted RBP3.9□□□□□ -1.79
HMGB3-203ENST00000430118 SAGP10523 405 aaPredicted RBP3.9□□□□□ -1.79
HMGB3-203ENST00000430118 ZNF24P17028 368 aa3.9□□□□□ -1.79
HMGB3-203ENST00000430118 GNAZP19086 355 aa3.9□□□□□ -1.79
HMGB3-203ENST00000430118 IL10P22301 178 aa3.9□□□□□ -1.79
HMGB3-203ENST00000430118 ACAT1P24752 427 aaKnown RBP3.9□□□□□ -1.79
HMGB3-203ENST00000430118 CALML3P27482 149 aa3.9□□□□□ -1.79
HMGB3-203ENST00000430118 HOXD9P28356 352 aaPredicted RBP3.9□□□□□ -1.79
HMGB3-203ENST00000430118 STIP1P31948 543 aaKnown RBP3.9□□□□□ -1.79
HMGB3-203ENST00000430118 PRKCIP41743 596 aa3.9□□□□□ -1.79
HMGB3-203ENST00000430118 NUDT6P53370 316 aa3.9□□□□□ -1.79
HMGB3-203ENST00000430118 ACTN3Q08043 901 aaPredicted RBP3.9□□□□□ -1.79
HMGB3-203ENST00000430118 MZT1Q08AG7 82 aa3.9□□□□□ -1.79
HMGB3-203ENST00000430118 GPR18Q14330 331 aa3.9□□□□□ -1.79
HMGB3-203ENST00000430118 WASHC2DQ5SRD0 308 aa3.9□□□□□ -1.79
HMGB3-203ENST00000430118 TXNRD3NBQ6F5E7 133 aa3.9□□□□□ -1.79
HMGB3-203ENST00000430118 SLC18B1Q6NT16 456 aa3.9□□□□□ -1.79
HMGB3-203ENST00000430118 ENPP7Q6UWV6 458 aa3.9□□□□□ -1.79
HMGB3-203ENST00000430118 Q6ZSV7 163 aa3.9□□□□□ -1.79
HMGB3-203ENST00000430118 ZNF367Q7RTV3 350 aa3.9□□□□□ -1.79
HMGB3-203ENST00000430118 PIP4P1Q86T03 277 aa3.9□□□□□ -1.79
HMGB3-203ENST00000430118 SERINC5Q86VE9 423 aa3.9□□□□□ -1.79
HMGB3-203ENST00000430118 KLHL7Q8IXQ5 586 aa3.9□□□□□ -1.79
HMGB3-203ENST00000430118 C7orf57Q8NEG2 295 aa3.9□□□□□ -1.79
HMGB3-203ENST00000430118 PRSS3P2Q8NHM4 247 aa3.9□□□□□ -1.79
HMGB3-203ENST00000430118 C16orf52Q8NHV5 167 aa3.9□□□□□ -1.79
HMGB3-203ENST00000430118 PPTC7Q8NI37 304 aa3.9□□□□□ -1.79
HMGB3-203ENST00000430118 FAM76AQ8TAV0 307 aa3.9□□□□□ -1.79
HMGB3-203ENST00000430118 UTP15Q8TED0 518 aaKnown RBP3.9□□□□□ -1.79
HMGB3-203ENST00000430118 ZFAND2BQ8WV99 257 aa3.9□□□□□ -1.79
HMGB3-203ENST00000430118 LZICQ8WZA0 190 aa3.9□□□□□ -1.79
HMGB3-203ENST00000430118 KRT35Q92764 455 aa3.9□□□□□ -1.79
HMGB3-203ENST00000430118 INPP5DQ92835 1189 aa3.9□□□□□ -1.79
HMGB3-203ENST00000430118 RHBDF1Q96CC6 855 aa3.9□□□□□ -1.79
HMGB3-203ENST00000430118 BICD1Q96G01 975 aa3.9□□□□□ -1.79
HMGB3-203ENST00000430118 APOLD1Q96LR9 279 aa3.9□□□□□ -1.79
HMGB3-203ENST00000430118 SFXN2Q96NB2 322 aa3.9□□□□□ -1.79
HMGB3-203ENST00000430118 QRFPRQ96P65 431 aa3.9□□□□□ -1.79
HMGB3-203ENST00000430118 MEIS3Q99687 375 aa3.9□□□□□ -1.79
HMGB3-203ENST00000430118 OLFM1Q99784 485 aa3.9□□□□□ -1.79
HMGB3-203ENST00000430118 PCED1AQ9H1Q7 454 aa3.9□□□□□ -1.79
HMGB3-203ENST00000430118 FN3KQ9H479 309 aa3.9□□□□□ -1.79
HMGB3-203ENST00000430118 PLAC1Q9HBJ0 212 aa3.9□□□□□ -1.79
HMGB3-203ENST00000430118 DNAJC17Q9NVM6 304 aaKnown RBP3.9□□□□□ -1.79
HMGB3-203ENST00000430118 CPSF3Q9UKF6 684 aaKnown RBP3.9□□□□□ -1.79
HMGB3-203ENST00000430118 DUSP12Q9UNI6 340 aa3.9□□□□□ -1.79
HMGB3-203ENST00000430118 R4GN57 208 aa3.9□□□□□ -1.79
HMGB3-203ENST00000430118 PTPRZ1P23471 2315 aaPredicted RBP3.9□□□□□ -1.79
HMGB3-203ENST00000430118 DMXL1Q9Y485 3027 aa3.9□□□□□ -1.79
HMGB3-203ENST00000430118 PLIN4Q96Q06 1357 aa3.89□□□□□ -1.79
HMGB3-203ENST00000430118 GVINP1Q7Z2Y8 2422 aa3.89□□□□□ -1.79
HMGB3-203ENST00000430118 FEZF1A0PJY2 475 aa3.89□□□□□ -1.79
HMGB3-203ENST00000430118 OR2M5A3KFT3 312 aa3.89□□□□□ -1.79
HMGB3-203ENST00000430118 ANKRD66B4E2M5 251 aa3.89□□□□□ -1.79
HMGB3-203ENST00000430118 C2CD4DB7Z1M9 353 aa3.89□□□□□ -1.79
HMGB3-203ENST00000430118 TMEM189-UBE2V1I3L0A0 370 aa3.89□□□□□ -1.79
HMGB3-203ENST00000430118 J3KR12 359 aa3.89□□□□□ -1.79
HMGB3-203ENST00000430118 SPRY3O43610 288 aa3.89□□□□□ -1.79
HMGB3-203ENST00000430118 OR10H2O60403 315 aa3.89□□□□□ -1.79
HMGB3-203ENST00000430118 KERAO60938 352 aa3.89□□□□□ -1.79
HMGB3-203ENST00000430118 SURF6O75683 361 aaKnown RBP3.89□□□□□ -1.79
HMGB3-203ENST00000430118 ERLIN2O94905 339 aa3.89□□□□□ -1.79
HMGB3-203ENST00000430118 OLFM2O95897 454 aa3.89□□□□□ -1.79
HMGB3-203ENST00000430118 CH25HO95992 272 aa3.89□□□□□ -1.79
HMGB3-203ENST00000430118 CYP1A2P05177 515 aa3.89□□□□□ -1.79
HMGB3-203ENST00000430118 PLA2G4BP0C869 781 aa3.89□□□□□ -1.79
HMGB3-203ENST00000430118 FRKP42685 505 aaPredicted RBP3.89□□□□□ -1.79
HMGB3-203ENST00000430118 LHX1P48742 406 aa3.89□□□□□ -1.79
HMGB3-203ENST00000430118 MXI1P50539 228 aa3.89□□□□□ -1.79
HMGB3-203ENST00000430118 CCNHP51946 323 aaPredicted RBP3.89□□□□□ -1.79
HMGB3-203ENST00000430118 CLDN20P56880 219 aa3.89□□□□□ -1.79
HMGB3-203ENST00000430118 BPIFB3P59826 476 aa3.89□□□□□ -1.79
HMGB3-203ENST00000430118 HNRNPKP61978 463 aaKnown RBP eCLIP3.89□□□□□ -1.79
HMGB3-203ENST00000430118 ROR2Q01974 943 aaKnown RBP3.89□□□□□ -1.79
HMGB3-203ENST00000430118 CRYZQ08257 329 aaKnown RBP3.89□□□□□ -1.79
HMGB3-203ENST00000430118 RPA4Q13156 261 aa3.89□□□□□ -1.79
HMGB3-203ENST00000430118 UBE2V1Q13404 147 aa3.89□□□□□ -1.79
HMGB3-203ENST00000430118 RCN2Q14257 317 aa3.89□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms