RNA–Protein interactions for RNA: ENST00000425280.1

LDB1-202, Transcript of LIM domain binding 1, humanhuman

TSL 5 BASIC

Gene LDB1, Length 2,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB1-202ENST00000425280 PCDH7O60245 1069 aa25.46■■□□□ 1.67
LDB1-202ENST00000425280 EML2O95834 649 aa25.46■■□□□ 1.67
LDB1-202ENST00000425280 SRSF11Q05519 484 aaKnown RBP25.46■■□□□ 1.67
LDB1-202ENST00000425280 IZUMO2Q6UXV1 221 aa25.46■■□□□ 1.67
LDB1-202ENST00000425280 NAF1Q96HR8 494 aaKnown RBP25.46■■□□□ 1.67
LDB1-202ENST00000425280 CDX2Q99626 313 aaPredicted RBP25.46■■□□□ 1.67
LDB1-202ENST00000425280 REXO4Q9GZR2 422 aaKnown RBP25.46■■□□□ 1.67
LDB1-202ENST00000425280 IKZF5Q9H5V7 419 aa25.46■■□□□ 1.67
LDB1-202ENST00000425280 H7BY64 318 aa25.46■■□□□ 1.67
LDB1-202ENST00000425280 RPSAP08865 295 aaKnown RBP25.46■■□□□ 1.67
LDB1-202ENST00000425280 COX7A2P14406 83 aa25.46■■□□□ 1.67
LDB1-202ENST00000425280 NCK1P16333 377 aa25.46■■□□□ 1.67
LDB1-202ENST00000425280 HOXB9P17482 250 aaPredicted RBP25.46■■□□□ 1.67
LDB1-202ENST00000425280 ATP6V1C1P21283 382 aa25.46■■□□□ 1.67
LDB1-202ENST00000425280 SOX11P35716 441 aa25.46■■□□□ 1.67
LDB1-202ENST00000425280 CCR5P51681 352 aa25.46■■□□□ 1.67
LDB1-202ENST00000425280 REEP5Q00765 189 aa25.46■■□□□ 1.67
LDB1-202ENST00000425280 CYP4F3Q08477 520 aa25.46■■□□□ 1.67
LDB1-202ENST00000425280 HKDC1Q2TB90 917 aa25.46■■□□□ 1.67
LDB1-202ENST00000425280 CMPK2Q5EBM0 449 aa25.46■■□□□ 1.67
LDB1-202ENST00000425280 ICE2Q659A1 982 aa25.46■■□□□ 1.67
LDB1-202ENST00000425280 KIAA0895LQ68EN5 471 aa25.46■■□□□ 1.67
LDB1-202ENST00000425280 ABRAXAS1Q6UWZ7 409 aa25.46■■□□□ 1.67
LDB1-202ENST00000425280 Q6ZSR6 202 aa25.46■■□□□ 1.67
LDB1-202ENST00000425280 OR4K1Q8NGD4 311 aa25.46■■□□□ 1.67
LDB1-202ENST00000425280 CCL4L1Q8NHW4 92 aa25.46■■□□□ 1.67
LDB1-202ENST00000425280 PRAP1Q96NZ9 151 aa25.46■■□□□ 1.67
LDB1-202ENST00000425280 RHBGQ9H310 441 aa25.46■■□□□ 1.67
LDB1-202ENST00000425280 HEBP2Q9Y5Z4 205 aa25.46■■□□□ 1.67
LDB1-202ENST00000425280 GNG14A0A1W2PPG7 69 aa25.45■■□□□ 1.66
LDB1-202ENST00000425280 SCAMP2O15127 329 aaKnown RBP25.45■■□□□ 1.66
LDB1-202ENST00000425280 ACADSP16219 412 aa25.45■■□□□ 1.66
LDB1-202ENST00000425280 CXCR2P25025 360 aa25.45■■□□□ 1.66
LDB1-202ENST00000425280 PTPN6P29350 595 aa25.45■■□□□ 1.66
LDB1-202ENST00000425280 WNT3P56703 355 aa25.45■■□□□ 1.66
LDB1-202ENST00000425280 SRP54P61011 504 aaKnown RBP25.45■■□□□ 1.66
LDB1-202ENST00000425280 GAS6Q14393 721 aa25.45■■□□□ 1.66
LDB1-202ENST00000425280 OGFRL1Q5TC84 451 aaPredicted RBP25.45■■□□□ 1.66
LDB1-202ENST00000425280 WDR48Q8TAF3 677 aa25.45■■□□□ 1.66
LDB1-202ENST00000425280 CANT1Q8WVQ1 401 aa25.45■■□□□ 1.66
LDB1-202ENST00000425280 ZNF583Q96ND8 569 aa25.45■■□□□ 1.66
LDB1-202ENST00000425280 ECSITQ9BQ95 431 aa25.45■■□□□ 1.66
LDB1-202ENST00000425280 THUMPD3Q9BV44 507 aaKnown RBP25.45■■□□□ 1.66
LDB1-202ENST00000425280 KLHL4Q9C0H6 718 aa25.45■■□□□ 1.66
LDB1-202ENST00000425280 TMEM168Q9H0V1 697 aa25.45■■□□□ 1.66
LDB1-202ENST00000425280 VCX3BQ9H321 246 aa25.45■■□□□ 1.66
LDB1-202ENST00000425280 PCDHB3Q9Y5E6 796 aa25.45■■□□□ 1.66
LDB1-202ENST00000425280 IL9P15248 144 aa25.44■■□□□ 1.66
LDB1-202ENST00000425280 PTX3P26022 381 aaPredicted RBP25.44■■□□□ 1.66
LDB1-202ENST00000425280 CDKN2CP42773 168 aa25.44■■□□□ 1.66
LDB1-202ENST00000425280 RGS19P49795 217 aa25.44■■□□□ 1.66
LDB1-202ENST00000425280 ALG11Q2TAA5 492 aa25.44■■□□□ 1.66
LDB1-202ENST00000425280 WASH2PQ6VEQ5 465 aa25.44■■□□□ 1.66
LDB1-202ENST00000425280 METTL4Q8N3J2 472 aa25.44■■□□□ 1.66
LDB1-202ENST00000425280 SYNPOQ8N3V7 929 aa25.44■■□□□ 1.66
LDB1-202ENST00000425280 ANKRD53Q8N9V6 530 aa25.44■■□□□ 1.66
LDB1-202ENST00000425280 OR8J2Q8NGG1 315 aa25.44■■□□□ 1.66
LDB1-202ENST00000425280 OR2A1Q8NGT9 310 aa25.44■■□□□ 1.66
LDB1-202ENST00000425280 STARD8Q92502 1023 aa25.44■■□□□ 1.66
LDB1-202ENST00000425280 PRAMEF26H0Y7S4 382 aa25.44■■□□□ 1.66
LDB1-202ENST00000425280 SCN2BO60939 215 aa25.44■■□□□ 1.66
LDB1-202ENST00000425280 RASGRP1O95267 797 aa25.44■■□□□ 1.66
LDB1-202ENST00000425280 HRH2P25021 359 aa25.44■■□□□ 1.66
LDB1-202ENST00000425280 ANKRD26P1Q6NSI1 321 aa25.44■■□□□ 1.66
LDB1-202ENST00000425280 TLDC1Q6P9B6 456 aa25.44■■□□□ 1.66
LDB1-202ENST00000425280 ABI3BPQ7Z7G0 1075 aa25.44■■□□□ 1.66
LDB1-202ENST00000425280 TMEM126BQ8IUX1 230 aa25.44■■□□□ 1.66
LDB1-202ENST00000425280 TMEM102Q8N9M5 508 aaPredicted RBP25.44■■□□□ 1.66
LDB1-202ENST00000425280 GOLM1Q8NBJ4 401 aa25.44■■□□□ 1.66
LDB1-202ENST00000425280 NELL1Q92832 810 aa25.44■■□□□ 1.66
LDB1-202ENST00000425280 SH3GL1Q99961 368 aa25.44■■□□□ 1.66
LDB1-202ENST00000425280 ADGRE2Q9UHX3 823 aa25.44■■□□□ 1.66
LDB1-202ENST00000425280 BTBD3Q9Y2F9 522 aa25.44■■□□□ 1.66
LDB1-202ENST00000425280 PCDHB11Q9Y5F2 797 aa25.44■■□□□ 1.66
LDB1-202ENST00000425280 TBX6O95947 436 aaPredicted RBP25.43■■□□□ 1.66
LDB1-202ENST00000425280 GSNP06396 782 aa25.43■■□□□ 1.66
LDB1-202ENST00000425280 HNRNPFP52597 415 aaKnown RBP25.43■■□□□ 1.66
LDB1-202ENST00000425280 PRKCQQ04759 706 aa25.43■■□□□ 1.66
LDB1-202ENST00000425280 PRDX1Q06830 199 aaKnown RBP25.43■■□□□ 1.66
LDB1-202ENST00000425280 IRAK1BP1Q5VVH5 260 aa25.43■■□□□ 1.66
LDB1-202ENST00000425280 TMEM132CQ8N3T6 1108 aa25.43■■□□□ 1.66
LDB1-202ENST00000425280 OR13H1Q8NG92 308 aa25.43■■□□□ 1.66
LDB1-202ENST00000425280 CPPED1Q9BRF8 314 aaPredicted RBP25.43■■□□□ 1.66
LDB1-202ENST00000425280 KIR3DX1Q9H7L2 352 aa25.43■■□□□ 1.66
LDB1-202ENST00000425280 NT5DC2Q9H857 520 aa25.43■■□□□ 1.66
LDB1-202ENST00000425280 WSB2Q9NYS7 404 aaPredicted RBP25.43■■□□□ 1.66
LDB1-202ENST00000425280 PCOLCE2Q9UKZ9 415 aa25.43■■□□□ 1.66
LDB1-202ENST00000425280 COLEC10Q9Y6Z7 277 aa25.43■■□□□ 1.66
LDB1-202ENST00000425280 FEZF1A0PJY2 475 aa25.43■■□□□ 1.66
LDB1-202ENST00000425280 GABRR3A8MPY1 467 aa25.43■■□□□ 1.66
LDB1-202ENST00000425280 GBAP04062 536 aa25.43■■□□□ 1.66
LDB1-202ENST00000425280 LAMP1P11279 417 aa25.43■■□□□ 1.66
LDB1-202ENST00000425280 ZNF763Q0D2J5 394 aa25.43■■□□□ 1.66
LDB1-202ENST00000425280 LRRC32Q14392 662 aa25.43■■□□□ 1.66
LDB1-202ENST00000425280 AASDHQ4L235 1098 aaPredicted RBP25.43■■□□□ 1.66
LDB1-202ENST00000425280 SLC30A9Q6PML9 568 aa25.43■■□□□ 1.66
LDB1-202ENST00000425280 Q7L0L9 218 aa25.43■■□□□ 1.66
LDB1-202ENST00000425280 TSTD1Q8NFU3 115 aa25.43■■□□□ 1.66
LDB1-202ENST00000425280 PUM2Q8TB72 1066 aaKnown RBP eCLIP25.43■■□□□ 1.66
LDB1-202ENST00000425280 MIEF2Q96C03 454 aa25.43■■□□□ 1.66
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms