RNA–Protein interactions for RNA: ENST00000425048.1

LINC01040-201, Transcript of long intergenic non-protein coding RNA 1040, humanhuman

TSL 2 BASIC

Gene LINC01040, Length 666 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01040-201ENST00000425048 LINC00242Q5T6M2 205 aa3.26□□□□□ -1.89
LINC01040-201ENST00000425048 MARC1Q5VT66 337 aa3.26□□□□□ -1.89
LINC01040-201ENST00000425048 PRR27Q6MZM9 219 aa3.26□□□□□ -1.89
LINC01040-201ENST00000425048 NHLRC1Q6VVB1 395 aa3.26□□□□□ -1.89
LINC01040-201ENST00000425048 KBTBD6Q86V97 674 aa3.26□□□□□ -1.89
LINC01040-201ENST00000425048 TICAM2Q86XR7 235 aa3.26□□□□□ -1.89
LINC01040-201ENST00000425048 RCOR2Q8IZ40 523 aa3.26□□□□□ -1.89
LINC01040-201ENST00000425048 OR4Q3Q8NH05 313 aa3.26□□□□□ -1.89
LINC01040-201ENST00000425048 ATL1Q8WXF7 558 aa3.26□□□□□ -1.89
LINC01040-201ENST00000425048 SLC35C2Q9NQQ7 365 aa3.26□□□□□ -1.89
LINC01040-201ENST00000425048 AUP1Q9Y679 476 aa3.26□□□□□ -1.89
LINC01040-201ENST00000425048 PRDM2Q13029 1718 aa3.25□□□□□ -1.89
LINC01040-201ENST00000425048 LOC102723996A0A087X1L8 192 aa3.25□□□□□ -1.89
LINC01040-201ENST00000425048 IGHV3-16A0A0C4DH30 117 aa3.25□□□□□ -1.89
LINC01040-201ENST00000425048 A0A1W2PPQ1 181 aa3.25□□□□□ -1.89
LINC01040-201ENST00000425048 PGPEP1LA6NFU8 196 aa3.25□□□□□ -1.89
LINC01040-201ENST00000425048 F5H0A9 414 aaPredicted RBP3.25□□□□□ -1.89
LINC01040-201ENST00000425048 NPHP1O15259 732 aa3.25□□□□□ -1.89
LINC01040-201ENST00000425048 CYTIPO60759 359 aa3.25□□□□□ -1.89
LINC01040-201ENST00000425048 BAIAP3O94812 1187 aa3.25□□□□□ -1.89
LINC01040-201ENST00000425048 ACSL3O95573 720 aa3.25□□□□□ -1.89
LINC01040-201ENST00000425048 CD27P26842 260 aa3.25□□□□□ -1.89
LINC01040-201ENST00000425048 HNRNPA3P51991 378 aaKnown RBP3.25□□□□□ -1.89
LINC01040-201ENST00000425048 RIPK4P57078 832 aa3.25□□□□□ -1.89
LINC01040-201ENST00000425048 ARF3P61204 181 aaPredicted RBP3.25□□□□□ -1.89
LINC01040-201ENST00000425048 IRX3P78415 501 aaPredicted RBP3.25□□□□□ -1.89
LINC01040-201ENST00000425048 ARF1P84077 181 aaKnown RBP3.25□□□□□ -1.89
LINC01040-201ENST00000425048 TMEM266Q2M3C6 531 aa3.25□□□□□ -1.89
LINC01040-201ENST00000425048 C15orf59Q2T9L4 293 aaPredicted RBP3.25□□□□□ -1.89
LINC01040-201ENST00000425048 FGD3Q5JSP0 725 aa3.25□□□□□ -1.89
LINC01040-201ENST00000425048 ATP1A1-AS1Q5TC04 95 aa3.25□□□□□ -1.89
LINC01040-201ENST00000425048 TMED8Q6PL24 325 aaPredicted RBP3.25□□□□□ -1.89
LINC01040-201ENST00000425048 SLC22A15Q8IZD6 547 aa3.25□□□□□ -1.89
LINC01040-201ENST00000425048 CCDC185Q8N715 623 aa3.25□□□□□ -1.89
LINC01040-201ENST00000425048 ZNF285Q96NJ3 590 aa3.25□□□□□ -1.89
LINC01040-201ENST00000425048 DGAT2Q96PD7 388 aa3.25□□□□□ -1.89
LINC01040-201ENST00000425048 MRPS18CQ9Y3D5 142 aaKnown RBP3.25□□□□□ -1.89
LINC01040-201ENST00000425048 CFAP65Q6ZU64 1925 aaKnown RBP3.25□□□□□ -1.89
LINC01040-201ENST00000425048 BAZ1BQ9UIG0 1483 aaKnown RBP3.24□□□□□ -1.89
LINC01040-201ENST00000425048 RNF103O00237 685 aa3.24□□□□□ -1.89
LINC01040-201ENST00000425048 CD4P01730 458 aa3.24□□□□□ -1.89
LINC01040-201ENST00000425048 SUPT20HL2P0C7V6 817 aa3.24□□□□□ -1.89
LINC01040-201ENST00000425048 ADORA3P0DMS8 318 aa3.24□□□□□ -1.89
LINC01040-201ENST00000425048 PFKFB1P16118 471 aa3.24□□□□□ -1.89
LINC01040-201ENST00000425048 GSK3BP49841 420 aa3.24□□□□□ -1.89
LINC01040-201ENST00000425048 JAKMIP3Q5VZ66 844 aa3.24□□□□□ -1.89
LINC01040-201ENST00000425048 RPAP2Q8IXW5 612 aaPredicted RBP3.24□□□□□ -1.89
LINC01040-201ENST00000425048 OR10S1Q8NGN2 331 aa3.24□□□□□ -1.89
LINC01040-201ENST00000425048 RPLP0P6Q8NHW5 317 aa3.24□□□□□ -1.89
LINC01040-201ENST00000425048 ITLN1Q8WWA0 313 aa3.24□□□□□ -1.89
LINC01040-201ENST00000425048 TAAR6Q96RI8 345 aa3.24□□□□□ -1.89
LINC01040-201ENST00000425048 MARCH7Q9H992 704 aa3.24□□□□□ -1.89
LINC01040-201ENST00000425048 TBC1D13Q9NVG8 400 aa3.24□□□□□ -1.89
LINC01040-201ENST00000425048 PTRH2Q9Y3E5 179 aaKnown RBP3.24□□□□□ -1.89
LINC01040-201ENST00000425048 DHX57Q6P158 1386 aaKnown RBP3.24□□□□□ -1.89
LINC01040-201ENST00000425048 A0A1B0GTH9 108 aa3.23□□□□□ -1.89
LINC01040-201ENST00000425048 CASTOR2A6NHX0 329 aa3.23□□□□□ -1.89
LINC01040-201ENST00000425048 J3KRW8 73 aa3.23□□□□□ -1.89
LINC01040-201ENST00000425048 AP3D1O14617 1153 aa3.23□□□□□ -1.89
LINC01040-201ENST00000425048 PTP4A3O75365 173 aa3.23□□□□□ -1.89
LINC01040-201ENST00000425048 RPLP0P05388 317 aaKnown RBP3.23□□□□□ -1.89
LINC01040-201ENST00000425048 RAB40ALP0C0E4 278 aa3.23□□□□□ -1.89
LINC01040-201ENST00000425048 ALDH1B1P30837 517 aa3.23□□□□□ -1.89
LINC01040-201ENST00000425048 GPR183P32249 361 aa3.23□□□□□ -1.89
LINC01040-201ENST00000425048 FAM106AQ4KMX7 169 aa3.23□□□□□ -1.89
LINC01040-201ENST00000425048 CTR9Q6PD62 1173 aa3.23□□□□□ -1.89
LINC01040-201ENST00000425048 FAM43BQ6ZT52 329 aaPredicted RBP3.23□□□□□ -1.89
LINC01040-201ENST00000425048 RPAINQ86UA6 219 aa3.23□□□□□ -1.89
LINC01040-201ENST00000425048 ZNF622Q969S3 477 aaKnown RBP eCLIP3.23□□□□□ -1.89
LINC01040-201ENST00000425048 NXNL1Q96CM4 212 aa3.23□□□□□ -1.89
LINC01040-201ENST00000425048 BTBD9Q96Q07 612 aa3.23□□□□□ -1.89
LINC01040-201ENST00000425048 IL17CQ9P0M4 197 aa3.23□□□□□ -1.89
LINC01040-201ENST00000425048 KLK11Q9UBX7 282 aa3.23□□□□□ -1.89
LINC01040-201ENST00000425048 NPHP3Q7Z494 1330 aa3.22□□□□□ -1.89
LINC01040-201ENST00000425048 SMARCA2P51531 1590 aa3.22□□□□□ -1.89
LINC01040-201ENST00000425048 FSD2A1L4K1 749 aa3.22□□□□□ -1.89
LINC01040-201ENST00000425048 ZNF32P17041 273 aa3.22□□□□□ -1.89
LINC01040-201ENST00000425048 NRIP1P48552 1158 aa3.22□□□□□ -1.89
LINC01040-201ENST00000425048 ABCE1P61221 599 aaKnown RBP3.22□□□□□ -1.89
LINC01040-201ENST00000425048 CUL3Q13618 768 aa3.22□□□□□ -1.89
LINC01040-201ENST00000425048 DUSP5Q16690 384 aa3.22□□□□□ -1.89
LINC01040-201ENST00000425048 CBWD6Q4V339 395 aa3.22□□□□□ -1.89
LINC01040-201ENST00000425048 CBWD3Q5JTY5 395 aa3.22□□□□□ -1.89
LINC01040-201ENST00000425048 EMBQ6PCB8 327 aa3.22□□□□□ -1.89
LINC01040-201ENST00000425048 IL17RELQ6ZVW7 336 aa3.22□□□□□ -1.89
LINC01040-201ENST00000425048 GBP7Q8N8V2 638 aaPredicted RBP3.22□□□□□ -1.89
LINC01040-201ENST00000425048 C11orf52Q96A22 123 aa3.22□□□□□ -1.89
LINC01040-201ENST00000425048 NUS1Q96E22 293 aa3.22□□□□□ -1.89
LINC01040-201ENST00000425048 KLHL5Q96PQ7 755 aa3.22□□□□□ -1.89
LINC01040-201ENST00000425048 STRADBQ9C0K7 418 aa3.22□□□□□ -1.89
LINC01040-201ENST00000425048 SYNCQ9H7C4 482 aa3.22□□□□□ -1.89
LINC01040-201ENST00000425048 MOB1AQ9H8S9 216 aa3.22□□□□□ -1.89
LINC01040-201ENST00000425048 IL1RAPQ9NPH3 570 aa3.22□□□□□ -1.89
LINC01040-201ENST00000425048 ZNF69Q9UC07 566 aa3.22□□□□□ -1.89
LINC01040-201ENST00000425048 ZCCHC6Q5VYS8 1495 aaKnown RBP3.22□□□□□ -1.89
LINC01040-201ENST00000425048 RNF123Q5XPI4 1314 aa3.21□□□□□ -1.89
LINC01040-201ENST00000425048 A0A1W2PQ09 198 aa3.21□□□□□ -1.9
LINC01040-201ENST00000425048 GLTPD2A6NH11 291 aa3.21□□□□□ -1.9
LINC01040-201ENST00000425048 SNX3O60493 162 aa3.21□□□□□ -1.9
LINC01040-201ENST00000425048 LETM1O95202 739 aaPredicted RBP3.21□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 83.4 ms