RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 ZNF358Q9NW07 568 aa6.68□□□□□ -1.34
SCN1A-204ENST00000423058 VNN3Q9NY84 501 aa6.68□□□□□ -1.34
SCN1A-204ENST00000423058 RABL2AQ9UBK7 228 aaPredicted RBP6.68□□□□□ -1.34
SCN1A-204ENST00000423058 RABL2BQ9UNT1 228 aa6.68□□□□□ -1.34
SCN1A-204ENST00000423058 M0R2N6 131 aa6.67□□□□□ -1.34
SCN1A-204ENST00000423058 SAP18O00422 153 aaKnown RBP6.67□□□□□ -1.34
SCN1A-204ENST00000423058 EIF1AYO14602 144 aaKnown RBP6.67□□□□□ -1.34
SCN1A-204ENST00000423058 IFNA7P01567 189 aa6.67□□□□□ -1.34
SCN1A-204ENST00000423058 P04436 131 aa6.67□□□□□ -1.34
SCN1A-204ENST00000423058 ICAM3P32942 547 aa6.67□□□□□ -1.34
SCN1A-204ENST00000423058 RPS14P62263 151 aaKnown RBP6.67□□□□□ -1.34
SCN1A-204ENST00000423058 RPP30P78346 268 aaKnown RBP6.67□□□□□ -1.34
SCN1A-204ENST00000423058 SLBPQ14493 270 aaKnown RBP eCLIP6.67□□□□□ -1.34
SCN1A-204ENST00000423058 NFE2L1Q14494 772 aa6.67□□□□□ -1.34
SCN1A-204ENST00000423058 ANKRD46Q86W74 232 aa6.67□□□□□ -1.34
SCN1A-204ENST00000423058 SPRYD4Q8WW59 207 aaPredicted RBP6.67□□□□□ -1.34
SCN1A-204ENST00000423058 BLOC1S4Q9NUP1 217 aa6.67□□□□□ -1.34
SCN1A-204ENST00000423058 GRHL1Q9NZI5 618 aa6.67□□□□□ -1.34
SCN1A-204ENST00000423058 FZD1Q9UP38 647 aa6.67□□□□□ -1.34
SCN1A-204ENST00000423058 STXBP5LQ9Y2K9 1186 aa6.67□□□□□ -1.34
SCN1A-204ENST00000423058 ZNF175Q9Y473 711 aa6.67□□□□□ -1.34
SCN1A-204ENST00000423058 PIP5K1BO14986 540 aa6.67□□□□□ -1.34
SCN1A-204ENST00000423058 ARL6IP5O75915 188 aa6.67□□□□□ -1.34
SCN1A-204ENST00000423058 OAS1P00973 400 aaKnown RBP6.67□□□□□ -1.34
SCN1A-204ENST00000423058 HRH2P25021 359 aa6.67□□□□□ -1.34
SCN1A-204ENST00000423058 UGT2B10P36537 528 aa6.67□□□□□ -1.34
SCN1A-204ENST00000423058 EIF1AXP47813 144 aaKnown RBP6.67□□□□□ -1.34
SCN1A-204ENST00000423058 FMO1Q01740 532 aa6.67□□□□□ -1.34
SCN1A-204ENST00000423058 TLE3Q04726 772 aa6.67□□□□□ -1.34
SCN1A-204ENST00000423058 RCAN2Q14206 197 aa6.67□□□□□ -1.34
SCN1A-204ENST00000423058 ADGRF1Q5T601 910 aa6.67□□□□□ -1.34
SCN1A-204ENST00000423058 GK5Q6ZS86 529 aa6.67□□□□□ -1.34
SCN1A-204ENST00000423058 CYB5D2Q8WUJ1 264 aa6.67□□□□□ -1.34
SCN1A-204ENST00000423058 SMPDL3AQ92484 453 aa6.67□□□□□ -1.34
SCN1A-204ENST00000423058 CENPNQ96H22 339 aaPredicted RBP6.67□□□□□ -1.34
SCN1A-204ENST00000423058 MYNNQ9NPC7 610 aa6.67□□□□□ -1.34
SCN1A-204ENST00000423058 GNG8Q9UK08 70 aa6.67□□□□□ -1.34
SCN1A-204ENST00000423058 COL5A2P05997 1499 aaPredicted RBP6.67□□□□□ -1.34
SCN1A-204ENST00000423058 ASTN1O14525 1302 aa6.67□□□□□ -1.34
SCN1A-204ENST00000423058 NAV1Q8NEY1 1877 aa6.67□□□□□ -1.34
SCN1A-204ENST00000423058 UPK3BL1B0FP48 263 aa6.67□□□□□ -1.34
SCN1A-204ENST00000423058 UPK3BL2E5RIL1 263 aa6.67□□□□□ -1.34
SCN1A-204ENST00000423058 E7ENX8 843 aa6.67□□□□□ -1.34
SCN1A-204ENST00000423058 CILPO75339 1184 aa6.67□□□□□ -1.34
SCN1A-204ENST00000423058 SHMT2P34897 504 aa6.67□□□□□ -1.34
SCN1A-204ENST00000423058 PREPP48147 710 aa6.67□□□□□ -1.34
SCN1A-204ENST00000423058 NRIP1P48552 1158 aa6.67□□□□□ -1.34
SCN1A-204ENST00000423058 RAB31Q13636 194 aa6.67□□□□□ -1.34
SCN1A-204ENST00000423058 LRP8Q14114 963 aa6.67□□□□□ -1.34
SCN1A-204ENST00000423058 FBXO43Q4G163 708 aa6.67□□□□□ -1.34
SCN1A-204ENST00000423058 PKDCCQ504Y2 493 aa6.67□□□□□ -1.34
SCN1A-204ENST00000423058 SWT1Q5T5J6 900 aaKnown RBP6.67□□□□□ -1.34
SCN1A-204ENST00000423058 TSTD2Q5T7W7 516 aa6.67□□□□□ -1.34
SCN1A-204ENST00000423058 TNFAIP8L2Q6P589 184 aaPredicted RBP6.67□□□□□ -1.34
SCN1A-204ENST00000423058 P2RY8Q86VZ1 359 aa6.67□□□□□ -1.34
SCN1A-204ENST00000423058 XYLT1Q86Y38 959 aa6.67□□□□□ -1.34
SCN1A-204ENST00000423058 OR10A6Q8NH74 314 aa6.67□□□□□ -1.34
SCN1A-204ENST00000423058 AENQ8WTP8 325 aaKnown RBP6.67□□□□□ -1.34
SCN1A-204ENST00000423058 NXNL1Q96CM4 212 aa6.67□□□□□ -1.34
SCN1A-204ENST00000423058 RAB39BQ96DA2 213 aa6.67□□□□□ -1.34
SCN1A-204ENST00000423058 KLRG1Q96E93 195 aa6.67□□□□□ -1.34
SCN1A-204ENST00000423058 RADILQ96JH8 1075 aa6.67□□□□□ -1.34
SCN1A-204ENST00000423058 FNIP2Q9P278 1114 aa6.67□□□□□ -1.34
SCN1A-204ENST00000423058 MKLN1Q9UL63 735 aa6.67□□□□□ -1.34
SCN1A-204ENST00000423058 SLC45A1Q9Y2W3 748 aa6.67□□□□□ -1.34
SCN1A-204ENST00000423058 H7C417 338 aa6.67□□□□□ -1.34
SCN1A-204ENST00000423058 ANKRD28O15084 1053 aa6.67□□□□□ -1.34
SCN1A-204ENST00000423058 B4GALT2O60909 372 aa6.67□□□□□ -1.34
SCN1A-204ENST00000423058 NUDT17P0C025 328 aa6.67□□□□□ -1.34
SCN1A-204ENST00000423058 ANXA8P13928 327 aa6.67□□□□□ -1.34
SCN1A-204ENST00000423058 FAM43BQ6ZT52 329 aaPredicted RBP6.67□□□□□ -1.34
SCN1A-204ENST00000423058 HTRA1Q92743 480 aa6.67□□□□□ -1.34
SCN1A-204ENST00000423058 HNRNPABQ99729 332 aaKnown RBP6.67□□□□□ -1.34
SCN1A-204ENST00000423058 TXN2Q99757 166 aa6.67□□□□□ -1.34
SCN1A-204ENST00000423058 PAK1IP1Q9NWT1 392 aaPredicted RBP6.67□□□□□ -1.34
SCN1A-204ENST00000423058 PCDHGC4Q9Y5F7 938 aa6.67□□□□□ -1.34
SCN1A-204ENST00000423058 ANKRD34BA5PLL1 514 aa6.67□□□□□ -1.34
SCN1A-204ENST00000423058 SLC7A4O43246 635 aa6.67□□□□□ -1.34
SCN1A-204ENST00000423058 MAFKO60675 156 aa6.67□□□□□ -1.34
SCN1A-204ENST00000423058 ZBTB11O95625 1053 aaPredicted RBP6.67□□□□□ -1.34
SCN1A-204ENST00000423058 IFNA1P01562 189 aa6.67□□□□□ -1.34
SCN1A-204ENST00000423058 C2P06681 752 aa6.67□□□□□ -1.34
SCN1A-204ENST00000423058 HEXAP06865 529 aa6.67□□□□□ -1.34
SCN1A-204ENST00000423058 S1PR1P21453 382 aa6.67□□□□□ -1.34
SCN1A-204ENST00000423058 ACADVLP49748 655 aa6.67□□□□□ -1.34
SCN1A-204ENST00000423058 SEPHS1P49903 392 aa6.67□□□□□ -1.34
SCN1A-204ENST00000423058 RUNX2Q13950 521 aa6.67□□□□□ -1.34
SCN1A-204ENST00000423058 C1orf94Q6P1W5 598 aa6.67□□□□□ -1.34
SCN1A-204ENST00000423058 SLC39A4Q6P5W5 647 aa6.67□□□□□ -1.34
SCN1A-204ENST00000423058 PLXDC1Q8IUK5 500 aa6.67□□□□□ -1.34
SCN1A-204ENST00000423058 FAM47BQ8NA70 645 aa6.67□□□□□ -1.34
SCN1A-204ENST00000423058 RAB7BQ96AH8 199 aa6.67□□□□□ -1.34
SCN1A-204ENST00000423058 UBXN10Q96LJ8 280 aa6.67□□□□□ -1.34
SCN1A-204ENST00000423058 TLR10Q9BXR5 811 aa6.67□□□□□ -1.34
SCN1A-204ENST00000423058 CHIAQ9BZP6 476 aa6.67□□□□□ -1.34
SCN1A-204ENST00000423058 TTYH3Q9C0H2 523 aa6.67□□□□□ -1.34
SCN1A-204ENST00000423058 PDZD7Q9H5P4 517 aa6.67□□□□□ -1.34
SCN1A-204ENST00000423058 SFXN1Q9H9B4 322 aa6.67□□□□□ -1.34
SCN1A-204ENST00000423058 ZCCHC3Q9NUD5 404 aaKnown RBP6.67□□□□□ -1.34
SCN1A-204ENST00000423058 RAB21Q9UL25 225 aa6.67□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms