RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 ARIH1Q9Y4X5 557 aaPredicted RBP10.35□□□□□ -0.75
USP54-204ENST00000422491 LEUTXA8MZ59 168 aa10.35□□□□□ -0.75
USP54-204ENST00000422491 TMEM229AB2RXF0 380 aa10.35□□□□□ -0.75
USP54-204ENST00000422491 COL6A1P12109 1028 aa10.35□□□□□ -0.75
USP54-204ENST00000422491 ENGP17813 658 aa10.35□□□□□ -0.75
USP54-204ENST00000422491 CHMP24386 653 aa10.35□□□□□ -0.75
USP54-204ENST00000422491 KIR2DL3P43628 341 aa10.35□□□□□ -0.75
USP54-204ENST00000422491 HOXC5Q00444 222 aa10.35□□□□□ -0.75
USP54-204ENST00000422491 TWF2Q6IBS0 349 aaKnown RBP10.35□□□□□ -0.75
USP54-204ENST00000422491 FBXL22Q6P050 247 aa10.35□□□□□ -0.75
USP54-204ENST00000422491 XKRXQ6PP77 449 aa10.35□□□□□ -0.75
USP54-204ENST00000422491 PAMR1Q6UXH9 720 aa10.35□□□□□ -0.75
USP54-204ENST00000422491 ZNF767PQ75MW2 155 aa10.35□□□□□ -0.75
USP54-204ENST00000422491 CIR1Q86X95 450 aaPredicted RBP10.35□□□□□ -0.75
USP54-204ENST00000422491 GRAMD2AQ8IUY3 354 aa10.35□□□□□ -0.75
USP54-204ENST00000422491 SLC5A8Q8N695 610 aa10.35□□□□□ -0.75
USP54-204ENST00000422491 VANGL1Q8TAA9 524 aaPredicted RBP10.35□□□□□ -0.75
USP54-204ENST00000422491 UBASH3BQ8TF42 649 aa10.35□□□□□ -0.75
USP54-204ENST00000422491 TPD52L3Q96J77 140 aa10.35□□□□□ -0.75
USP54-204ENST00000422491 TSSK3Q96PN8 268 aa10.35□□□□□ -0.75
USP54-204ENST00000422491 NTMT1Q9BV86 223 aa10.35□□□□□ -0.75
USP54-204ENST00000422491 UCK2Q9BZX2 261 aa10.35□□□□□ -0.75
USP54-204ENST00000422491 P2RY12Q9H244 342 aa10.35□□□□□ -0.75
USP54-204ENST00000422491 C12orf10Q9HB07 376 aa10.35□□□□□ -0.75
USP54-204ENST00000422491 TMPRSS11EQ9UL52 423 aa10.35□□□□□ -0.75
USP54-204ENST00000422491 COMMD10Q9Y6G5 202 aa10.35□□□□□ -0.75
USP54-204ENST00000422491 GJA3Q9Y6H8 435 aa10.35□□□□□ -0.75
USP54-204ENST00000422491 NLRC5Q86WI3 1866 aa10.34□□□□□ -0.75
USP54-204ENST00000422491 IQCMA0A1B0GVH7 501 aa10.34□□□□□ -0.75
USP54-204ENST00000422491 C2orf81A6NN90 581 aa10.34□□□□□ -0.75
USP54-204ENST00000422491 LOC730098B7Z3J9 87 aa10.34□□□□□ -0.75
USP54-204ENST00000422491 AKR7A2O43488 359 aa10.34□□□□□ -0.75
USP54-204ENST00000422491 C1QBP02746 253 aa10.34□□□□□ -0.75
USP54-204ENST00000422491 SLC10A3P09131 477 aa10.34□□□□□ -0.75
USP54-204ENST00000422491 CCNYL3P0C7X3 344 aa10.34□□□□□ -0.75
USP54-204ENST00000422491 EBLN1P0CF75 366 aa10.34□□□□□ -0.75
USP54-204ENST00000422491 SMIM10L2AP0DMW4 78 aa10.34□□□□□ -0.75
USP54-204ENST00000422491 SMIM10L2BP0DMW5 78 aa10.34□□□□□ -0.75
USP54-204ENST00000422491 CYP2A6P11509 494 aaPredicted RBP10.34□□□□□ -0.75
USP54-204ENST00000422491 ZNF30P17039 623 aa10.34□□□□□ -0.75
USP54-204ENST00000422491 POLR2CP19387 275 aaPredicted RBP10.34□□□□□ -0.75
USP54-204ENST00000422491 TGM4P49221 684 aa10.34□□□□□ -0.75
USP54-204ENST00000422491 RORCP51449 518 aa10.34□□□□□ -0.75
USP54-204ENST00000422491 PCDH1Q08174 1060 aa10.34□□□□□ -0.75
USP54-204ENST00000422491 PPIGQ13427 754 aaKnown RBP eCLIP10.34□□□□□ -0.75
USP54-204ENST00000422491 PTCHD3Q3KNS1 767 aa10.34□□□□□ -0.75
USP54-204ENST00000422491 CCNJQ5T5M9 372 aa10.34□□□□□ -0.75
USP54-204ENST00000422491 LRRC66Q68CR7 880 aa10.34□□□□□ -0.75
USP54-204ENST00000422491 OVOS1Q6IE37 1185 aa10.34□□□□□ -0.75
USP54-204ENST00000422491 CREB3L2Q70SY1 520 aa10.34□□□□□ -0.75
USP54-204ENST00000422491 SLC51BQ86UW2 128 aa10.34□□□□□ -0.75
USP54-204ENST00000422491 GPR152Q8TDT2 470 aa10.34□□□□□ -0.75
USP54-204ENST00000422491 CD244Q9BZW8 370 aa10.34□□□□□ -0.75
USP54-204ENST00000422491 VPS4AQ9UN37 437 aa10.34□□□□□ -0.75
USP54-204ENST00000422491 PADI2Q9Y2J8 665 aa10.34□□□□□ -0.75
USP54-204ENST00000422491 CMAHPQ9Y471 501 aa10.34□□□□□ -0.75
USP54-204ENST00000422491 NUP214P35658 2090 aaPredicted RBP10.34□□□□□ -0.75
USP54-204ENST00000422491 MYO16Q9Y6X6 1858 aa10.34□□□□□ -0.75
USP54-204ENST00000422491 STX7O15400 261 aaKnown RBP10.34□□□□□ -0.75
USP54-204ENST00000422491 PLA2G10O15496 165 aa10.34□□□□□ -0.75
USP54-204ENST00000422491 GPR39O43194 453 aa10.34□□□□□ -0.75
USP54-204ENST00000422491 NOS1APO75052 506 aaPredicted RBP10.34□□□□□ -0.75
USP54-204ENST00000422491 PRLP01236 227 aa10.34□□□□□ -0.75
USP54-204ENST00000422491 CSF2P04141 144 aa10.34□□□□□ -0.75
USP54-204ENST00000422491 SCG5P05408 212 aa10.34□□□□□ -0.75
USP54-204ENST00000422491 SDC1P18827 310 aa10.34□□□□□ -0.75
USP54-204ENST00000422491 UQCRC1P31930 480 aa10.34□□□□□ -0.75
USP54-204ENST00000422491 DAB2P98082 770 aa10.34□□□□□ -0.75
USP54-204ENST00000422491 KHDRBS1Q07666 443 aaKnown RBP eCLIP10.34□□□□□ -0.75
USP54-204ENST00000422491 SAXO2Q658L1 398 aa10.34□□□□□ -0.75
USP54-204ENST00000422491 LAMTOR1Q6IAA8 161 aa10.34□□□□□ -0.75
USP54-204ENST00000422491 MSANTD1Q6ZTZ1 278 aa10.34□□□□□ -0.75
USP54-204ENST00000422491 TTC16Q8NEE8 873 aa10.34□□□□□ -0.75
USP54-204ENST00000422491 OR10G2Q8NGC3 310 aa10.34□□□□□ -0.75
USP54-204ENST00000422491 TRPM4Q8TD43 1214 aa10.34□□□□□ -0.75
USP54-204ENST00000422491 BTN2A2Q8WVV5 523 aa10.34□□□□□ -0.75
USP54-204ENST00000422491 MARVELD3Q96A59 401 aa10.34□□□□□ -0.75
USP54-204ENST00000422491 MTFMTQ96DP5 389 aaKnown RBP10.34□□□□□ -0.75
USP54-204ENST00000422491 TRMT61AQ96FX7 289 aaKnown RBP10.34□□□□□ -0.75
USP54-204ENST00000422491 NECTIN4Q96NY8 510 aa10.34□□□□□ -0.75
USP54-204ENST00000422491 NIPSNAP1Q9BPW8 284 aa10.34□□□□□ -0.75
USP54-204ENST00000422491 MGME1Q9BQP7 344 aa10.34□□□□□ -0.75
USP54-204ENST00000422491 TRAF4Q9BUZ4 470 aaPredicted RBP10.34□□□□□ -0.75
USP54-204ENST00000422491 FAM83DQ9H4H8 585 aa10.34□□□□□ -0.75
USP54-204ENST00000422491 ZNF556Q9HAH1 456 aa10.34□□□□□ -0.75
USP54-204ENST00000422491 TMEM39AQ9NV64 488 aa10.34□□□□□ -0.75
USP54-204ENST00000422491 MAT2BQ9NZL9 334 aa10.34□□□□□ -0.75
USP54-204ENST00000422491 CNOT2Q9NZN8 540 aaKnown RBP10.34□□□□□ -0.75
USP54-204ENST00000422491 OARD1Q9Y530 152 aa10.34□□□□□ -0.75
USP54-204ENST00000422491 ACTL7AQ9Y615 435 aa10.34□□□□□ -0.75
USP54-204ENST00000422491 LTBP3Q9NS15 1303 aa10.34□□□□□ -0.75
USP54-204ENST00000422491 CASTOR2A6NHX0 329 aa10.33□□□□□ -0.76
USP54-204ENST00000422491 TNFRSF11BO00300 401 aa10.33□□□□□ -0.76
USP54-204ENST00000422491 ARHGEF9O43307 516 aa10.33□□□□□ -0.76
USP54-204ENST00000422491 PRPS2P11908 318 aa10.33□□□□□ -0.76
USP54-204ENST00000422491 LPOP22079 712 aaPredicted RBP10.33□□□□□ -0.76
USP54-204ENST00000422491 ALAS2P22557 587 aa10.33□□□□□ -0.76
USP54-204ENST00000422491 CPN2P22792 545 aa10.33□□□□□ -0.76
USP54-204ENST00000422491 PTGER3P43115 390 aa10.33□□□□□ -0.76
USP54-204ENST00000422491 TBX4P57082 545 aa10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms