RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 SMOC1Q9H4F8 434 aa16.44■□□□□ 0.22
CCDC28B-202ENST00000421922 TXLNGQ9NUQ3 528 aa16.44■□□□□ 0.22
CCDC28B-202ENST00000421922 TSC22D4Q9Y3Q8 395 aa16.44■□□□□ 0.22
CCDC28B-202ENST00000421922 MAGEB17A8MXT2 336 aa16.43■□□□□ 0.22
CCDC28B-202ENST00000421922 HAT1O14929 419 aa16.43■□□□□ 0.22
CCDC28B-202ENST00000421922 PRR35P0CG20 571 aa16.43■□□□□ 0.22
CCDC28B-202ENST00000421922 MAGP20916 626 aa16.43■□□□□ 0.22
CCDC28B-202ENST00000421922 ADSLP30566 484 aaPredicted RBP16.43■□□□□ 0.22
CCDC28B-202ENST00000421922 GRIA3P42263 894 aa16.43■□□□□ 0.22
CCDC28B-202ENST00000421922 GPR3P46089 330 aa16.43■□□□□ 0.22
CCDC28B-202ENST00000421922 RPS15AP62244 130 aaKnown RBP16.43■□□□□ 0.22
CCDC28B-202ENST00000421922 CYP4F2P78329 520 aa16.43■□□□□ 0.22
CCDC28B-202ENST00000421922 EMX2Q04743 252 aa16.43■□□□□ 0.22
CCDC28B-202ENST00000421922 MAPRE2Q15555 327 aa16.43■□□□□ 0.22
CCDC28B-202ENST00000421922 FIGLAQ6QHK4 219 aa16.43■□□□□ 0.22
CCDC28B-202ENST00000421922 KANSL1Q7Z3B3 1105 aa16.43■□□□□ 0.22
CCDC28B-202ENST00000421922 MIER2Q8N344 545 aa16.43■□□□□ 0.22
CCDC28B-202ENST00000421922 RNF175Q8N4F7 328 aa16.43■□□□□ 0.22
CCDC28B-202ENST00000421922 MINDY1Q8N5J2 469 aa16.43■□□□□ 0.22
CCDC28B-202ENST00000421922 EID2Q8N6I1 236 aa16.43■□□□□ 0.22
CCDC28B-202ENST00000421922 OR2I1PQ8NGU4 316 aa16.43■□□□□ 0.22
CCDC28B-202ENST00000421922 RHBGQ9H310 441 aa16.43■□□□□ 0.22
CCDC28B-202ENST00000421922 POMT2Q9UKY4 750 aa16.43■□□□□ 0.22
CCDC28B-202ENST00000421922 KLHL20Q9Y2M5 609 aa16.43■□□□□ 0.22
CCDC28B-202ENST00000421922 TMED5Q9Y3A6 229 aa16.43■□□□□ 0.22
CCDC28B-202ENST00000421922 COPG1Q9Y678 874 aaKnown RBP16.43■□□□□ 0.22
CCDC28B-202ENST00000421922 IGKV1-8A0A0C4DH67 115 aa16.42■□□□□ 0.22
CCDC28B-202ENST00000421922 MAP3K7O43318 606 aa16.42■□□□□ 0.22
CCDC28B-202ENST00000421922 SH3BGRLO75368 114 aa16.42■□□□□ 0.22
CCDC28B-202ENST00000421922 ATP5HO75947 161 aa16.42■□□□□ 0.22
CCDC28B-202ENST00000421922 RETP07949 1114 aa16.42■□□□□ 0.22
CCDC28B-202ENST00000421922 PRPH2P23942 346 aa16.42■□□□□ 0.22
CCDC28B-202ENST00000421922 PTX3P26022 381 aaPredicted RBP16.42■□□□□ 0.22
CCDC28B-202ENST00000421922 SCTRP47872 440 aa16.42■□□□□ 0.22
CCDC28B-202ENST00000421922 RAP1GDS1P52306 607 aa16.42■□□□□ 0.22
CCDC28B-202ENST00000421922 GPLD1P80108 840 aa16.42■□□□□ 0.22
CCDC28B-202ENST00000421922 DAB2P98082 770 aa16.42■□□□□ 0.22
CCDC28B-202ENST00000421922 CYP4F3Q08477 520 aa16.42■□□□□ 0.22
CCDC28B-202ENST00000421922 KRT72Q14CN4 511 aa16.42■□□□□ 0.22
CCDC28B-202ENST00000421922 SPIN4Q56A73 249 aa16.42■□□□□ 0.22
CCDC28B-202ENST00000421922 FAM91A1Q658Y4 838 aa16.42■□□□□ 0.22
CCDC28B-202ENST00000421922 ZNF425Q6IV72 752 aa16.42■□□□□ 0.22
CCDC28B-202ENST00000421922 PAQR7Q86WK9 346 aa16.42■□□□□ 0.22
CCDC28B-202ENST00000421922 PLD3Q8IV08 490 aa16.42■□□□□ 0.22
CCDC28B-202ENST00000421922 FAM9CQ8IZT9 166 aa16.42■□□□□ 0.22
CCDC28B-202ENST00000421922 CPSF7Q8N684 471 aaKnown RBP16.42■□□□□ 0.22
CCDC28B-202ENST00000421922 Q8N9G6 341 aaPredicted RBP16.42■□□□□ 0.22
CCDC28B-202ENST00000421922 ZUFSPQ96AP4 578 aa16.42■□□□□ 0.22
CCDC28B-202ENST00000421922 CMTM5Q96DZ9 223 aa16.42■□□□□ 0.22
CCDC28B-202ENST00000421922 ZDHHC12Q96GR4 267 aa16.42■□□□□ 0.22
CCDC28B-202ENST00000421922 METTL2AQ96IZ6 378 aaKnown RBP16.42■□□□□ 0.22
CCDC28B-202ENST00000421922 APOLD1Q96LR9 279 aa16.42■□□□□ 0.22
CCDC28B-202ENST00000421922 CCDC106Q9BWC9 280 aa16.42■□□□□ 0.22
CCDC28B-202ENST00000421922 AIG1Q9NVV5 245 aa16.42■□□□□ 0.22
CCDC28B-202ENST00000421922 AHSPQ9NZD4 102 aa16.42■□□□□ 0.22
CCDC28B-202ENST00000421922 CPED1A4D0V7 1026 aa16.41■□□□□ 0.22
CCDC28B-202ENST00000421922 PSMD12O00232 456 aaPredicted RBP16.41■□□□□ 0.22
CCDC28B-202ENST00000421922 TRIM38O00635 465 aa16.41■□□□□ 0.22
CCDC28B-202ENST00000421922 SIGLEC6O43699 453 aa16.41■□□□□ 0.22
CCDC28B-202ENST00000421922 PCDHGA12O60330 932 aa16.41■□□□□ 0.22
CCDC28B-202ENST00000421922 TGFB1P01137 390 aa16.41■□□□□ 0.22
CCDC28B-202ENST00000421922 ALDOCP09972 364 aaKnown RBP16.41■□□□□ 0.22
CCDC28B-202ENST00000421922 GIMD1P0DJR0 217 aa16.41■□□□□ 0.22
CCDC28B-202ENST00000421922 ESRRAP11474 423 aaPredicted RBP16.41■□□□□ 0.22
CCDC28B-202ENST00000421922 PIK3R1P27986 724 aa16.41■□□□□ 0.22
CCDC28B-202ENST00000421922 AHRP35869 848 aa16.41■□□□□ 0.22
CCDC28B-202ENST00000421922 DUSP3P51452 185 aaPredicted RBP16.41■□□□□ 0.22
CCDC28B-202ENST00000421922 KLF10Q13118 480 aa16.41■□□□□ 0.22
CCDC28B-202ENST00000421922 IL23RQ5VWK5 629 aa16.41■□□□□ 0.22
CCDC28B-202ENST00000421922 ADNP2Q6IQ32 1131 aa16.41■□□□□ 0.22
CCDC28B-202ENST00000421922 ZNF438Q7Z4V0 828 aa16.41■□□□□ 0.22
CCDC28B-202ENST00000421922 FAM181AQ8N9Y4 354 aa16.41■□□□□ 0.22
CCDC28B-202ENST00000421922 TRPV3Q8NET8 790 aa16.41■□□□□ 0.22
CCDC28B-202ENST00000421922 FLVCR1-AS1Q8TAF5 88 aa16.41■□□□□ 0.22
CCDC28B-202ENST00000421922 NCSTNQ92542 709 aa16.41■□□□□ 0.22
CCDC28B-202ENST00000421922 NAT6Q93015 286 aa16.41■□□□□ 0.22
CCDC28B-202ENST00000421922 RERGQ96A58 199 aaPredicted RBP16.41■□□□□ 0.22
CCDC28B-202ENST00000421922 CCDC74AQ96AQ1 378 aa16.41■□□□□ 0.22
CCDC28B-202ENST00000421922 ZBTB18Q99592 522 aa16.41■□□□□ 0.22
CCDC28B-202ENST00000421922 SEMA6CQ9H3T2 930 aa16.41■□□□□ 0.22
CCDC28B-202ENST00000421922 RUVBL1Q9Y265 456 aaKnown RBP16.41■□□□□ 0.22
CCDC28B-202ENST00000421922 CCL27Q9Y4X3 112 aa16.41■□□□□ 0.22
CCDC28B-202ENST00000421922 OR2A25A4D2G3 310 aa16.4■□□□□ 0.22
CCDC28B-202ENST00000421922 CLEC3AO75596 197 aa16.4■□□□□ 0.22
CCDC28B-202ENST00000421922 PCSK2P16519 638 aa16.4■□□□□ 0.22
CCDC28B-202ENST00000421922 BCL6P41182 706 aa16.4■□□□□ 0.22
CCDC28B-202ENST00000421922 NME5P56597 212 aa16.4■□□□□ 0.22
CCDC28B-202ENST00000421922 OR1D5P58170 312 aa16.4■□□□□ 0.22
CCDC28B-202ENST00000421922 RGS1Q08116 209 aa16.4■□□□□ 0.22
CCDC28B-202ENST00000421922 AMZ1Q400G9 498 aa16.4■□□□□ 0.22
CCDC28B-202ENST00000421922 RFTN2Q52LD8 501 aaPredicted RBP16.4■□□□□ 0.22
CCDC28B-202ENST00000421922 AGKQ53H12 422 aa16.4■□□□□ 0.22
CCDC28B-202ENST00000421922 TCEAL6Q6IPX3 200 aa16.4■□□□□ 0.22
CCDC28B-202ENST00000421922 YTHDF3Q7Z739 585 aaKnown RBP16.4■□□□□ 0.22
CCDC28B-202ENST00000421922 PLXDC1Q8IUK5 500 aa16.4■□□□□ 0.22
CCDC28B-202ENST00000421922 ANKRD53Q8N9V6 530 aa16.4■□□□□ 0.22
CCDC28B-202ENST00000421922 MFSD9Q8NBP5 474 aa16.4■□□□□ 0.22
CCDC28B-202ENST00000421922 TCEAL3Q969E4 200 aa16.4■□□□□ 0.22
CCDC28B-202ENST00000421922 THAP11Q96EK4 314 aa16.4■□□□□ 0.22
CCDC28B-202ENST00000421922 NSL1Q96IY1 281 aa16.4■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 84.1 ms