RNA–Protein interactions for RNA: ENST00000421141.5

PTCH1-206, Transcript of patched 1, humanhuman

TSL 5 BASIC

Gene PTCH1, Length 7,659 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-206ENST00000421141 PDP2Q9P2J9 529 aa10.4□□□□□ -0.74
PTCH1-206ENST00000421141 P2RY2P41231 377 aa10.4□□□□□ -0.74
PTCH1-206ENST00000421141 FAM189BP81408 668 aa10.4□□□□□ -0.74
PTCH1-206ENST00000421141 PAOXQ6QHF9 649 aa10.4□□□□□ -0.74
PTCH1-206ENST00000421141 SLC17A6Q9P2U8 582 aa10.4□□□□□ -0.74
PTCH1-206ENST00000421141 MYRFQ9Y2G1 1151 aa10.4□□□□□ -0.74
PTCH1-206ENST00000421141 SEC16AO15027 2179 aa10.4□□□□□ -0.74
PTCH1-206ENST00000421141 CLEC3AO75596 197 aa10.4□□□□□ -0.74
PTCH1-206ENST00000421141 ENDOUP21128 410 aaKnown RBP10.4□□□□□ -0.74
PTCH1-206ENST00000421141 TBPL1P62380 186 aa10.4□□□□□ -0.74
PTCH1-206ENST00000421141 PDCD4Q53EL6 469 aaKnown RBP10.4□□□□□ -0.74
PTCH1-206ENST00000421141 ATG14Q6ZNE5 492 aa10.4□□□□□ -0.74
PTCH1-206ENST00000421141 DPPA4Q7L190 304 aa10.4□□□□□ -0.74
PTCH1-206ENST00000421141 PIH1D2Q8WWB5 315 aa10.4□□□□□ -0.74
PTCH1-206ENST00000421141 IPCEF1Q8WWN9 437 aaPredicted RBP10.4□□□□□ -0.74
PTCH1-206ENST00000421141 DEFB126Q9BYW3 111 aa10.4□□□□□ -0.74
PTCH1-206ENST00000421141 WDR90Q96KV7 1748 aa10.4□□□□□ -0.74
PTCH1-206ENST00000421141 ADAM12O43184 909 aa10.4□□□□□ -0.74
PTCH1-206ENST00000421141 CDC123O75794 336 aaPredicted RBP10.4□□□□□ -0.74
PTCH1-206ENST00000421141 RENP00797 406 aa10.4□□□□□ -0.74
PTCH1-206ENST00000421141 ZNF823P16415 610 aa10.4□□□□□ -0.74
PTCH1-206ENST00000421141 FECHP22830 423 aa10.4□□□□□ -0.74
PTCH1-206ENST00000421141 PDZK1Q5T2W1 519 aa10.4□□□□□ -0.74
PTCH1-206ENST00000421141 GLYATQ6IB77 296 aa10.4□□□□□ -0.74
PTCH1-206ENST00000421141 PEG10Q86TG7 708 aaKnown RBP10.4□□□□□ -0.74
PTCH1-206ENST00000421141 BCL2L14Q9BZR8 327 aa10.4□□□□□ -0.74
PTCH1-206ENST00000421141 OR8D2Q9GZM6 311 aa10.4□□□□□ -0.74
PTCH1-206ENST00000421141 SLC22A2O15244 555 aa10.4□□□□□ -0.74
PTCH1-206ENST00000421141 EDF1O60869 148 aaKnown RBP10.4□□□□□ -0.74
PTCH1-206ENST00000421141 NME6O75414 186 aaPredicted RBP10.4□□□□□ -0.74
PTCH1-206ENST00000421141 ZNF37AP17032 561 aaPredicted RBP10.4□□□□□ -0.74
PTCH1-206ENST00000421141 ITGA3P26006 1051 aa10.4□□□□□ -0.74
PTCH1-206ENST00000421141 ZNF763Q0D2J5 394 aa10.4□□□□□ -0.74
PTCH1-206ENST00000421141 ATCAYQ86WG3 371 aa10.4□□□□□ -0.74
PTCH1-206ENST00000421141 IZUMO1Q8IYV9 350 aa10.4□□□□□ -0.74
PTCH1-206ENST00000421141 TMEM74Q96NL1 305 aa10.4□□□□□ -0.74
PTCH1-206ENST00000421141 HIST1H2AAQ96QV6 131 aa10.4□□□□□ -0.74
PTCH1-206ENST00000421141 GPER1Q99527 375 aa10.4□□□□□ -0.74
PTCH1-206ENST00000421141 WNT7BP56706 349 aa10.4□□□□□ -0.75
PTCH1-206ENST00000421141 DYNC1I2Q13409 638 aaKnown RBP10.4□□□□□ -0.75
PTCH1-206ENST00000421141 TMEM35AQ53FP2 167 aa10.4□□□□□ -0.75
PTCH1-206ENST00000421141 LCN1P1Q5VSP4 162 aa10.4□□□□□ -0.75
PTCH1-206ENST00000421141 NPAS3Q8IXF0 933 aa10.4□□□□□ -0.75
PTCH1-206ENST00000421141 ANKRD27Q96NW4 1050 aa10.4□□□□□ -0.75
PTCH1-206ENST00000421141 RBM4BQ9BQ04 359 aaKnown RBP10.4□□□□□ -0.75
PTCH1-206ENST00000421141 RBM4Q9BWF3 364 aaKnown RBP10.4□□□□□ -0.75
PTCH1-206ENST00000421141 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP10.4□□□□□ -0.75
PTCH1-206ENST00000421141 DNMT3AQ9Y6K1 912 aaPredicted RBP10.4□□□□□ -0.75
PTCH1-206ENST00000421141 RALGAPA1Q6GYQ0 2036 aa10.4□□□□□ -0.75
PTCH1-206ENST00000421141 SRRM3A6NNA2 597 aaPredicted RBP10.39□□□□□ -0.75
PTCH1-206ENST00000421141 LOC730098B7Z3J9 87 aa10.39□□□□□ -0.75
PTCH1-206ENST00000421141 BCAS2O75934 225 aaPredicted RBP10.39□□□□□ -0.75
PTCH1-206ENST00000421141 UNC5CO95185 931 aa10.39□□□□□ -0.75
PTCH1-206ENST00000421141 CD9P21926 228 aa10.39□□□□□ -0.75
PTCH1-206ENST00000421141 CORO7P57737 925 aa10.39□□□□□ -0.75
PTCH1-206ENST00000421141 NFE2L1Q14494 772 aa10.39□□□□□ -0.75
PTCH1-206ENST00000421141 PNCKQ6P2M8 343 aa10.39□□□□□ -0.75
PTCH1-206ENST00000421141 GATA5Q9BWX5 397 aaPredicted RBP10.39□□□□□ -0.75
PTCH1-206ENST00000421141 BATF3Q9NR55 127 aa10.39□□□□□ -0.75
PTCH1-206ENST00000421141 ZFR2Q9UPR6 939 aaKnown RBP10.39□□□□□ -0.75
PTCH1-206ENST00000421141 ARID2Q68CP9 1835 aa10.39□□□□□ -0.75
PTCH1-206ENST00000421141 TNFRSF11BO00300 401 aa10.39□□□□□ -0.75
PTCH1-206ENST00000421141 BTN3A3O00478 584 aa10.39□□□□□ -0.75
PTCH1-206ENST00000421141 OR1I1O60431 355 aa10.39□□□□□ -0.75
PTCH1-206ENST00000421141 ABLIM3O94929 683 aa10.39□□□□□ -0.75
PTCH1-206ENST00000421141 LINGO3P0C6S8 592 aa10.39□□□□□ -0.75
PTCH1-206ENST00000421141 GP1BBP13224 206 aa10.39□□□□□ -0.75
PTCH1-206ENST00000421141 EIF2DP41214 584 aaKnown RBP10.39□□□□□ -0.75
PTCH1-206ENST00000421141 AFF1P51825 1210 aaKnown RBP10.39□□□□□ -0.75
PTCH1-206ENST00000421141 DEFB133Q30KQ1 61 aa10.39□□□□□ -0.75
PTCH1-206ENST00000421141 RAB41Q5JT25 222 aa10.39□□□□□ -0.75
PTCH1-206ENST00000421141 DNM1P34Q6PK57 102 aa10.39□□□□□ -0.75
PTCH1-206ENST00000421141 KRT77Q7Z794 578 aa10.39□□□□□ -0.75
PTCH1-206ENST00000421141 ACVR1CQ8NER5 493 aa10.39□□□□□ -0.75
PTCH1-206ENST00000421141 OR2AJ1Q8NGZ0 328 aa10.39□□□□□ -0.75
PTCH1-206ENST00000421141 KIF1CO43896 1103 aaKnown RBP10.39□□□□□ -0.75
PTCH1-206ENST00000421141 SRFP11831 508 aa10.39□□□□□ -0.75
PTCH1-206ENST00000421141 PRDX6P30041 224 aa10.39□□□□□ -0.75
PTCH1-206ENST00000421141 PBX2P40425 430 aa10.39□□□□□ -0.75
PTCH1-206ENST00000421141 RAB8AP61006 207 aa10.39□□□□□ -0.75
PTCH1-206ENST00000421141 YPEL5P62699 121 aa10.39□□□□□ -0.75
PTCH1-206ENST00000421141 SLAMF1Q13291 335 aa10.39□□□□□ -0.75
PTCH1-206ENST00000421141 IRF4Q15306 451 aa10.39□□□□□ -0.75
PTCH1-206ENST00000421141 TMPRSS11AQ6ZMR5 421 aa10.39□□□□□ -0.75
PTCH1-206ENST00000421141 NRROSQ86YC3 692 aa10.39□□□□□ -0.75
PTCH1-206ENST00000421141 BANPQ8N9N5 519 aa10.39□□□□□ -0.75
PTCH1-206ENST00000421141 OR10A6Q8NH74 314 aa10.39□□□□□ -0.75
PTCH1-206ENST00000421141 SLC22A8Q8TCC7 542 aa10.39□□□□□ -0.75
PTCH1-206ENST00000421141 TTYH1Q9H313 450 aaPredicted RBP10.39□□□□□ -0.75
PTCH1-206ENST00000421141 XKR8Q9H6D3 395 aa10.39□□□□□ -0.75
PTCH1-206ENST00000421141 USP3Q9Y6I4 520 aa10.39□□□□□ -0.75
PTCH1-206ENST00000421141 FAM227AF5H4B4 570 aa10.39□□□□□ -0.75
PTCH1-206ENST00000421141 RRP8O43159 456 aaKnown RBP10.39□□□□□ -0.75
PTCH1-206ENST00000421141 CXCL10P02778 98 aa10.39□□□□□ -0.75
PTCH1-206ENST00000421141 MYL9P24844 172 aa10.39□□□□□ -0.75
PTCH1-206ENST00000421141 HOXD9P28356 352 aaPredicted RBP10.39□□□□□ -0.75
PTCH1-206ENST00000421141 SLC6A4P31645 630 aa10.39□□□□□ -0.75
PTCH1-206ENST00000421141 RORAP35398 523 aa10.39□□□□□ -0.75
PTCH1-206ENST00000421141 FOLR3P41439 243 aa10.39□□□□□ -0.75
PTCH1-206ENST00000421141 NSDHLQ15738 373 aa10.39□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms