RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 FOXN2P32314 431 aa12.55□□□□□ -0.4
COL6A3-206ENST00000409809 CRADDP78560 199 aa12.55□□□□□ -0.4
COL6A3-206ENST00000409809 ZACNQ401N2 412 aa12.55□□□□□ -0.4
COL6A3-206ENST00000409809 ESCO2Q56NI9 601 aa12.55□□□□□ -0.4
COL6A3-206ENST00000409809 C6orf141Q5SZD1 244 aa12.55□□□□□ -0.4
COL6A3-206ENST00000409809 PGAP3Q96FM1 320 aaPredicted RBP12.55□□□□□ -0.4
COL6A3-206ENST00000409809 OR2M2Q96R28 347 aa12.55□□□□□ -0.4
COL6A3-206ENST00000409809 SEMA3CQ99985 751 aa12.55□□□□□ -0.4
COL6A3-206ENST00000409809 DPCDQ9BVM2 203 aaPredicted RBP12.55□□□□□ -0.4
COL6A3-206ENST00000409809 RSPH9Q9H1X1 276 aaPredicted RBP12.55□□□□□ -0.4
COL6A3-206ENST00000409809 RNF121Q9H920 327 aa12.55□□□□□ -0.4
COL6A3-206ENST00000409809 PXMP2Q9NR77 195 aa12.55□□□□□ -0.4
COL6A3-206ENST00000409809 RIMKLBQ9ULI2 386 aa12.55□□□□□ -0.4
COL6A3-206ENST00000409809 MAP4K5Q9Y4K4 846 aa12.55□□□□□ -0.4
COL6A3-206ENST00000409809 C10orf71Q711Q0 1435 aa12.55□□□□□ -0.4
COL6A3-206ENST00000409809 TEX13DA0A0J9YY54 714 aaPredicted RBP12.55□□□□□ -0.4
COL6A3-206ENST00000409809 BHLHE40O14503 412 aa12.55□□□□□ -0.4
COL6A3-206ENST00000409809 GRIN3BO60391 1043 aa12.55□□□□□ -0.4
COL6A3-206ENST00000409809 ZNF821O75541 412 aaPredicted RBP12.55□□□□□ -0.4
COL6A3-206ENST00000409809 TFP02787 698 aa12.55□□□□□ -0.4
COL6A3-206ENST00000409809 AQP1P29972 269 aa12.55□□□□□ -0.4
COL6A3-206ENST00000409809 ZNF674Q2M3X9 581 aa12.55□□□□□ -0.4
COL6A3-206ENST00000409809 C10orf90Q96M02 699 aa12.55□□□□□ -0.4
COL6A3-206ENST00000409809 TTYH3Q9C0H2 523 aa12.55□□□□□ -0.4
COL6A3-206ENST00000409809 KCNMB3Q9NPA1 279 aa12.55□□□□□ -0.4
COL6A3-206ENST00000409809 GPRC5BQ9NZH0 403 aa12.55□□□□□ -0.4
COL6A3-206ENST00000409809 GLYATL1P3A0A0U1RQE8 302 aa12.55□□□□□ -0.4
COL6A3-206ENST00000409809 NDST3O95803 873 aa12.55□□□□□ -0.4
COL6A3-206ENST00000409809 CSF1P09603 554 aa12.55□□□□□ -0.4
COL6A3-206ENST00000409809 VARSP26640 1264 aaKnown RBP12.55□□□□□ -0.4
COL6A3-206ENST00000409809 GLUD2P49448 558 aa12.55□□□□□ -0.4
COL6A3-206ENST00000409809 SCARB2Q14108 478 aa12.55□□□□□ -0.4
COL6A3-206ENST00000409809 ST3GAL4Q11206 333 aa12.55□□□□□ -0.4
COL6A3-206ENST00000409809 SNTB2Q13425 540 aaKnown RBP12.55□□□□□ -0.4
COL6A3-206ENST00000409809 CBX2Q14781 532 aaPredicted RBP12.55□□□□□ -0.4
COL6A3-206ENST00000409809 ASB3Q9Y575 518 aa12.55□□□□□ -0.4
COL6A3-206ENST00000409809 TMEM14AQ9Y6G1 99 aa12.55□□□□□ -0.4
COL6A3-206ENST00000409809 SCN9AQ15858 1988 aa12.55□□□□□ -0.4
COL6A3-206ENST00000409809 A0A0D9SG52 128 aa12.55□□□□□ -0.4
COL6A3-206ENST00000409809 SLITRK3O94933 977 aa12.55□□□□□ -0.4
COL6A3-206ENST00000409809 GOT1P17174 413 aa12.55□□□□□ -0.4
COL6A3-206ENST00000409809 HMGCS2P54868 508 aa12.55□□□□□ -0.4
COL6A3-206ENST00000409809 FBXL19Q6PCT2 694 aa12.55□□□□□ -0.4
COL6A3-206ENST00000409809 RFPL4BQ6ZWI9 263 aa12.55□□□□□ -0.4
COL6A3-206ENST00000409809 TMPRSS11BQ86T26 416 aa12.55□□□□□ -0.4
COL6A3-206ENST00000409809 OR10R2Q8NGX6 335 aa12.55□□□□□ -0.4
COL6A3-206ENST00000409809 ASB13Q8WXK3 278 aa12.55□□□□□ -0.4
COL6A3-206ENST00000409809 TSSK3Q96PN8 268 aa12.55□□□□□ -0.4
COL6A3-206ENST00000409809 DPEP2Q9H4A9 486 aa12.55□□□□□ -0.4
COL6A3-206ENST00000409809 TTLL8A6PVC2 850 aa12.55□□□□□ -0.4
COL6A3-206ENST00000409809 IL7RP16871 459 aa12.55□□□□□ -0.4
COL6A3-206ENST00000409809 ATP5A1P25705 553 aaKnown RBP12.55□□□□□ -0.4
COL6A3-206ENST00000409809 SFT2D3Q587I9 215 aa12.55□□□□□ -0.4
COL6A3-206ENST00000409809 DCST2Q5T1A1 773 aa12.55□□□□□ -0.4
COL6A3-206ENST00000409809 GLT8D1Q68CQ7 371 aa12.55□□□□□ -0.4
COL6A3-206ENST00000409809 STK35Q8TDR2 534 aa12.55□□□□□ -0.4
COL6A3-206ENST00000409809 PTERQ96BW5 349 aa12.55□□□□□ -0.4
COL6A3-206ENST00000409809 OR2M4Q96R27 311 aa12.55□□□□□ -0.4
COL6A3-206ENST00000409809 LUZP4Q9P127 313 aa12.55□□□□□ -0.4
COL6A3-206ENST00000409809 ANKRD33BA6NCL7 494 aa12.55□□□□□ -0.4
COL6A3-206ENST00000409809 DLDP09622 509 aaKnown RBP12.55□□□□□ -0.4
COL6A3-206ENST00000409809 CBSLP0DN79 551 aa12.55□□□□□ -0.4
COL6A3-206ENST00000409809 CBSP35520 551 aa12.55□□□□□ -0.4
COL6A3-206ENST00000409809 UBAP2Q5T6F2 1119 aaKnown RBP12.55□□□□□ -0.4
COL6A3-206ENST00000409809 GPAT4Q86UL3 456 aa12.55□□□□□ -0.4
COL6A3-206ENST00000409809 SGTBQ96EQ0 304 aa12.55□□□□□ -0.4
COL6A3-206ENST00000409809 IL4I1Q96RQ9 567 aa12.55□□□□□ -0.4
COL6A3-206ENST00000409809 ABCB8Q9NUT2 735 aa12.55□□□□□ -0.4
COL6A3-206ENST00000409809 LRFN1Q9P244 771 aa12.55□□□□□ -0.4
COL6A3-206ENST00000409809 N6AMT1Q9Y5N5 214 aa12.55□□□□□ -0.4
COL6A3-206ENST00000409809 MYPNQ86TC9 1320 aa12.55□□□□□ -0.4
COL6A3-206ENST00000409809 C1orf167Q5SNV9 1468 aa12.55□□□□□ -0.4
COL6A3-206ENST00000409809 DBIP07108 87 aaKnown RBP12.54□□□□□ -0.4
COL6A3-206ENST00000409809 CAMLGP49069 296 aa12.54□□□□□ -0.4
COL6A3-206ENST00000409809 ZNF616Q08AN1 781 aa12.54□□□□□ -0.4
COL6A3-206ENST00000409809 FGFBP1Q14512 234 aa12.54□□□□□ -0.4
COL6A3-206ENST00000409809 AVPI1Q5T686 147 aa12.54□□□□□ -0.4
COL6A3-206ENST00000409809 MSANTD2Q6P1R3 559 aa12.54□□□□□ -0.4
COL6A3-206ENST00000409809 TUBG2Q9NRH3 451 aa12.54□□□□□ -0.4
COL6A3-206ENST00000409809 PIP5K1BO14986 540 aa12.54□□□□□ -0.4
COL6A3-206ENST00000409809 TRAPPC2P0DI81 140 aa12.54□□□□□ -0.4
COL6A3-206ENST00000409809 TRAPPC2BP0DI82 140 aa12.54□□□□□ -0.4
COL6A3-206ENST00000409809 CCND3P30281 292 aaPredicted RBP12.54□□□□□ -0.4
COL6A3-206ENST00000409809 ZNF33AQ06730 810 aa12.54□□□□□ -0.4
COL6A3-206ENST00000409809 HLFQ16534 295 aa12.54□□□□□ -0.4
COL6A3-206ENST00000409809 RASGRP3Q8IV61 690 aa12.54□□□□□ -0.4
COL6A3-206ENST00000409809 LGI2Q8N0V4 545 aa12.54□□□□□ -0.4
COL6A3-206ENST00000409809 OR2AJ1Q8NGZ0 328 aa12.54□□□□□ -0.4
COL6A3-206ENST00000409809 COQ8BQ96D53 544 aa12.54□□□□□ -0.4
COL6A3-206ENST00000409809 SPOCK3Q9BQ16 436 aa12.54□□□□□ -0.4
COL6A3-206ENST00000409809 TVP23BQ9NYZ1 205 aa12.54□□□□□ -0.4
COL6A3-206ENST00000409809 EXTL2Q9UBQ6 330 aa12.54□□□□□ -0.4
COL6A3-206ENST00000409809 SEC14L2O76054 403 aa12.54□□□□□ -0.4
COL6A3-206ENST00000409809 HTR1BP28222 390 aa12.54□□□□□ -0.4
COL6A3-206ENST00000409809 WNT3AP56704 352 aa12.54□□□□□ -0.4
COL6A3-206ENST00000409809 ST3GAL3Q11203 375 aa12.54□□□□□ -0.4
COL6A3-206ENST00000409809 PLA2G4EQ3MJ16 856 aa12.54□□□□□ -0.4
COL6A3-206ENST00000409809 FAM83HQ6ZRV2 1179 aaPredicted RBP12.54□□□□□ -0.4
COL6A3-206ENST00000409809 PPP1R13LQ8WUF5 828 aa12.54□□□□□ -0.4
COL6A3-206ENST00000409809 CELF1Q92879 486 aaKnown RBP12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms