RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 CYP2A6P11509 494 aaPredicted RBP12.92□□□□□ -0.34
VPS54-203ENST00000409558 IMPA1P29218 277 aa12.92□□□□□ -0.34
VPS54-203ENST00000409558 VIPR1P32241 457 aa12.92□□□□□ -0.34
VPS54-203ENST00000409558 RNF144AP50876 292 aaPredicted RBP12.92□□□□□ -0.34
VPS54-203ENST00000409558 HSPB3Q12988 150 aa12.92□□□□□ -0.34
VPS54-203ENST00000409558 OR2T5Q6IEZ7 315 aa12.92□□□□□ -0.34
VPS54-203ENST00000409558 OR2T29Q8NH02 315 aa12.92□□□□□ -0.34
VPS54-203ENST00000409558 ZBP1Q9H171 429 aa12.92□□□□□ -0.34
VPS54-203ENST00000409558 MIEF1Q9NQG6 463 aa12.92□□□□□ -0.34
VPS54-203ENST00000409558 TBX21Q9UL17 535 aa12.92□□□□□ -0.34
VPS54-203ENST00000409558 TMCO1Q9UM00 188 aa12.92□□□□□ -0.34
VPS54-203ENST00000409558 PCYT1BQ9Y5K3 369 aaPredicted RBP12.92□□□□□ -0.34
VPS54-203ENST00000409558 ARID1BQ8NFD5 2236 aaPredicted RBP12.91□□□□□ -0.34
VPS54-203ENST00000409558 PRRT4C9JH25 899 aa12.91□□□□□ -0.34
VPS54-203ENST00000409558 RFXAPO00287 272 aa12.91□□□□□ -0.34
VPS54-203ENST00000409558 LCKP06239 509 aa12.91□□□□□ -0.34
VPS54-203ENST00000409558 HLCSP50747 726 aa12.91□□□□□ -0.34
VPS54-203ENST00000409558 DAPP51397 102 aa12.91□□□□□ -0.34
VPS54-203ENST00000409558 NPTX1Q15818 432 aa12.91□□□□□ -0.34
VPS54-203ENST00000409558 VMACQ2NL98 169 aa12.91□□□□□ -0.34
VPS54-203ENST00000409558 RD3Q7Z3Z2 195 aa12.91□□□□□ -0.34
VPS54-203ENST00000409558 NFKBIDQ8NI38 313 aa12.91□□□□□ -0.34
VPS54-203ENST00000409558 EPB41L1Q9H4G0 881 aa12.91□□□□□ -0.34
VPS54-203ENST00000409558 DYRK4Q9NR20 520 aa12.91□□□□□ -0.34
VPS54-203ENST00000409558 SIRT5Q9NXA8 310 aa12.91□□□□□ -0.34
VPS54-203ENST00000409558 THUMPD1Q9NXG2 353 aaKnown RBP12.91□□□□□ -0.34
VPS54-203ENST00000409558 OGDHLQ9ULD0 1010 aa12.91□□□□□ -0.34
VPS54-203ENST00000409558 LINC00854A0A1B0GVQ3 168 aa12.91□□□□□ -0.34
VPS54-203ENST00000409558 M0QX08 132 aa12.91□□□□□ -0.34
VPS54-203ENST00000409558 M0R3G1 203 aa12.91□□□□□ -0.34
VPS54-203ENST00000409558 SLC1A7O00341 560 aa12.91□□□□□ -0.34
VPS54-203ENST00000409558 PPM1DO15297 605 aa12.91□□□□□ -0.34
VPS54-203ENST00000409558 POP7O75817 140 aaKnown RBP12.91□□□□□ -0.34
VPS54-203ENST00000409558 CAPNS1P04632 268 aa12.91□□□□□ -0.34
VPS54-203ENST00000409558 NCS1P62166 190 aa12.91□□□□□ -0.34
VPS54-203ENST00000409558 TUBA4AP68366 448 aa12.91□□□□□ -0.34
VPS54-203ENST00000409558 SLC7A9P82251 487 aa12.91□□□□□ -0.34
VPS54-203ENST00000409558 SPIBQ01892 262 aa12.91□□□□□ -0.34
VPS54-203ENST00000409558 NR1D2Q14995 579 aa12.91□□□□□ -0.34
VPS54-203ENST00000409558 DUOXA1Q1HG43 343 aa12.91□□□□□ -0.34
VPS54-203ENST00000409558 ZNF385BQ569K4 471 aa12.91□□□□□ -0.34
VPS54-203ENST00000409558 RPS26P11Q5JNZ5 115 aaPredicted RBP12.91□□□□□ -0.34
VPS54-203ENST00000409558 PAGE2BQ5JRK9 111 aa12.91□□□□□ -0.34
VPS54-203ENST00000409558 ERAP2Q6P179 960 aa12.91□□□□□ -0.34
VPS54-203ENST00000409558 P3H2Q8IVL5 708 aa12.91□□□□□ -0.34
VPS54-203ENST00000409558 SLC15A4Q8N697 577 aa12.91□□□□□ -0.34
VPS54-203ENST00000409558 OR5AR1Q8NGP9 310 aa12.91□□□□□ -0.34
VPS54-203ENST00000409558 ZNF480Q8WV37 535 aa12.91□□□□□ -0.34
VPS54-203ENST00000409558 CMTM7Q96FZ5 175 aa12.91□□□□□ -0.34
VPS54-203ENST00000409558 CSF3RQ99062 836 aa12.91□□□□□ -0.34
VPS54-203ENST00000409558 ANKDD1BA6NHY2 528 aa12.91□□□□□ -0.34
VPS54-203ENST00000409558 H0YJX3 145 aa12.91□□□□□ -0.34
VPS54-203ENST00000409558 WNT9AO14904 365 aa12.91□□□□□ -0.34
VPS54-203ENST00000409558 EPHX1P07099 455 aa12.91□□□□□ -0.34
VPS54-203ENST00000409558 JUPP14923 745 aa12.91□□□□□ -0.34
VPS54-203ENST00000409558 PTPN2P17706 415 aa12.91□□□□□ -0.34
VPS54-203ENST00000409558 MAPK1P28482 360 aa12.91□□□□□ -0.34
VPS54-203ENST00000409558 MLLT10P55197 1068 aa12.91□□□□□ -0.34
VPS54-203ENST00000409558 NFATC3Q12968 1075 aa12.91□□□□□ -0.34
VPS54-203ENST00000409558 SOWAHCQ53LP3 525 aaPredicted RBP12.91□□□□□ -0.34
VPS54-203ENST00000409558 ELMSAN1Q6PJG2 1045 aa12.91□□□□□ -0.34
VPS54-203ENST00000409558 ZNF773Q6PK81 442 aa12.91□□□□□ -0.34
VPS54-203ENST00000409558 LIPIQ6XZB0 460 aa12.91□□□□□ -0.34
VPS54-203ENST00000409558 RNF130Q86XS8 419 aa12.91□□□□□ -0.34
VPS54-203ENST00000409558 VN1R2Q8NFZ6 395 aa12.91□□□□□ -0.34
VPS54-203ENST00000409558 OR9Q2Q8NGE9 314 aa12.91□□□□□ -0.34
VPS54-203ENST00000409558 RORBQ92753 470 aa12.91□□□□□ -0.34
VPS54-203ENST00000409558 RLIMQ9NVW2 624 aa12.91□□□□□ -0.34
VPS54-203ENST00000409558 TAS2R16Q9NYV7 291 aa12.91□□□□□ -0.34
VPS54-203ENST00000409558 STOML2Q9UJZ1 356 aa12.91□□□□□ -0.34
VPS54-203ENST00000409558 OR1A2Q9Y585 309 aa12.91□□□□□ -0.34
VPS54-203ENST00000409558 A0A096LPI6 279 aa12.9□□□□□ -0.34
VPS54-203ENST00000409558 ABHD14A-ACY1A0A1B0GW23 586 aa12.9□□□□□ -0.34
VPS54-203ENST00000409558 PRPS2P11908 318 aa12.9□□□□□ -0.34
VPS54-203ENST00000409558 HTR1BP28222 390 aa12.9□□□□□ -0.34
VPS54-203ENST00000409558 C21orf33P30042 268 aaPredicted RBP12.9□□□□□ -0.34
VPS54-203ENST00000409558 FEN1P39748 380 aaKnown RBP12.9□□□□□ -0.34
VPS54-203ENST00000409558 BMXP51813 675 aa12.9□□□□□ -0.34
VPS54-203ENST00000409558 HBA1P69905 142 aa12.9□□□□□ -0.34
VPS54-203ENST00000409558 DHCR24Q15392 516 aa12.9□□□□□ -0.34
VPS54-203ENST00000409558 GET4Q7L5D6 327 aaPredicted RBP12.9□□□□□ -0.34
VPS54-203ENST00000409558 LRRC70Q7Z2Q7 622 aa12.9□□□□□ -0.34
VPS54-203ENST00000409558 OR5K1Q8NHB7 308 aa12.9□□□□□ -0.34
VPS54-203ENST00000409558 BADQ92934 168 aa12.9□□□□□ -0.34
VPS54-203ENST00000409558 EXOSC8Q96B26 276 aaKnown RBP12.9□□□□□ -0.34
VPS54-203ENST00000409558 PADI4Q9UM07 663 aa12.9□□□□□ -0.34
VPS54-203ENST00000409558 KCNK5O95279 499 aa12.9□□□□□ -0.34
VPS54-203ENST00000409558 DMC1Q14565 340 aa12.9□□□□□ -0.34
VPS54-203ENST00000409558 PRR23BQ6ZRT6 265 aa12.9□□□□□ -0.34
VPS54-203ENST00000409558 ZCCHC7Q8N3Z6 543 aaKnown RBP12.9□□□□□ -0.34
VPS54-203ENST00000409558 BTN2A2Q8WVV5 523 aa12.9□□□□□ -0.34
VPS54-203ENST00000409558 PAK6Q9NQU5 681 aaPredicted RBP12.9□□□□□ -0.34
VPS54-203ENST00000409558 TMEM184CQ9NVA4 438 aa12.9□□□□□ -0.34
VPS54-203ENST00000409558 PRAMEF33A0A0G2JMD5 474 aa12.9□□□□□ -0.34
VPS54-203ENST00000409558 SUV39H1O43463 412 aa12.9□□□□□ -0.34
VPS54-203ENST00000409558 SOX14O95416 240 aa12.9□□□□□ -0.34
VPS54-203ENST00000409558 PRPS1L1P21108 318 aa12.9□□□□□ -0.34
VPS54-203ENST00000409558 DBPQ10586 325 aaPredicted RBP12.9□□□□□ -0.34
VPS54-203ENST00000409558 SPDYE7PQ495Y7 208 aa12.9□□□□□ -0.34
VPS54-203ENST00000409558 GPR149Q86SP6 731 aa12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms