RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 CLUP10909 449 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 EDNRAP25101 427 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 NMBRP28336 390 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 S100A7P31151 101 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 RBMXP38159 391 aaKnown RBP5.93□□□□□ -1.46
SCN1A-203ENST00000409050 ABCG1P45844 678 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 CDH11P55287 796 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 HERV-K104P61576 105 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 CSTF1Q05048 431 aaKnown RBP5.93□□□□□ -1.46
SCN1A-203ENST00000409050 TDGQ13569 410 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 ENPP2Q13822 863 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 PUM1Q14671 1186 aaKnown RBP eCLIP5.93□□□□□ -1.46
SCN1A-203ENST00000409050 MFSD13AQ14CX5 517 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 ALG10BQ5I7T1 473 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 TMEM220Q6QAJ8 160 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 LRRTM4Q86VH4 590 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 DCUN1D3Q8IWE4 304 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 MINDY1Q8N5J2 469 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 GDPD1Q8N9F7 314 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 SLC37A3Q8NCC5 494 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 FCAMRQ8WWV6 532 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 NUS1Q96E22 293 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 HMCESQ96FZ2 354 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 HSPA12BQ96MM6 686 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 NECAB3Q96P71 396 aaPredicted RBP5.93□□□□□ -1.46
SCN1A-203ENST00000409050 FAM83CQ9BQN1 747 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 FUZQ9BT04 418 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 HDHD5Q9BXW7 423 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 BCO2Q9BYV7 579 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 SLC2A4RGQ9NR83 387 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 SIRPGQ9P1W8 387 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 DGKBQ9Y6T7 804 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 U3KQV3 271 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 BTBD19C9JJ37 291 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 SLC33A1O00400 549 aaPredicted RBP5.93□□□□□ -1.46
SCN1A-203ENST00000409050 LGR5O75473 907 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 AHSA1O95433 338 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 HRGP04196 525 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 CHRNB2P17787 502 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 OXTRP30559 389 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 CD52P31358 61 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 HLCSP50747 726 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 GPR143P51810 404 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 NCBP2P52298 156 aaKnown RBP eCLIP5.93□□□□□ -1.46
SCN1A-203ENST00000409050 LILRA4P59901 499 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 CDKL1Q00532 357 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 SP2Q02086 613 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 SLC10A7Q0GE19 358 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 MRPL49Q13405 166 aaKnown RBP5.93□□□□□ -1.46
SCN1A-203ENST00000409050 PRAMEF18Q5VWM3 479 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 KANK2Q63ZY3 851 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 RAB12Q6IQ22 244 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 RGMBQ6NW40 437 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 TPRG1Q6ZUI0 275 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 UTS2BQ765I0 119 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 OTOP3Q7RTS5 596 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 GALNT12Q8IXK2 581 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 IQCF2Q8IXL9 164 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 DCAF4L2Q8NA75 395 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 OR2L2Q8NH16 312 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 OR10G6Q8NH81 332 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 C7orf43Q8WVR3 580 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 FEM1AQ9BSK4 669 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 TBL1XR1Q9BZK7 514 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 SRRDQ9UH36 339 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 PHF24Q9UPV7 400 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 SCML2Q9UQR0 700 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 TIMM22Q9Y584 194 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 IGLV3-22A0A075B6J6 115 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 OR6C70A6NIJ9 312 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 HAS3O00219 553 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 SCDO00767 359 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 XPNPEP2O43895 674 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 ATF4P18848 351 aaPredicted RBP5.93□□□□□ -1.46
SCN1A-203ENST00000409050 CDK2P24941 298 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 MAGEA12P43365 314 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 ACTBP60709 375 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 ACTG1P63261 375 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 MPP2Q14168 576 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 EIF4HQ15056 248 aaKnown RBP5.93□□□□□ -1.46
SCN1A-203ENST00000409050 SLC14A2Q15849 920 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 ADGRF1Q5T601 910 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 ZNF613Q6PF04 617 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 C6orf89Q6UWU4 347 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 ASCC1Q8N9N2 400 aaKnown RBP5.93□□□□□ -1.46
SCN1A-203ENST00000409050 KLRG1Q96E93 195 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 MFSD3Q96ES6 412 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 SUSD3Q96L08 255 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 AP1S3Q96PC3 154 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 DGAT2Q96PD7 388 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 OR2AG1Q9H205 316 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 CCM2LQ9NUG4 571 aaPredicted RBP5.93□□□□□ -1.46
SCN1A-203ENST00000409050 ASB6Q9NWX5 421 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 KCNN3Q9UGI6 736 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 TEX264Q9Y6I9 313 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 PMF1-BGLAPU3KQ54 211 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 SLC22A31A6NKX4 558 aa5.92□□□□□ -1.46
SCN1A-203ENST00000409050 FAM170BA6NMN3 283 aa5.92□□□□□ -1.46
SCN1A-203ENST00000409050 NEDD8-MDP1E9PL57 170 aa5.92□□□□□ -1.46
SCN1A-203ENST00000409050 INMT-MINDY4F8WBC2 141 aa5.92□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms