RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 IDH3AP50213 366 aa13.64□□□□□ -0.23
SKA1-202ENST00000398452 INHBCP55103 352 aa13.64□□□□□ -0.23
SKA1-202ENST00000398452 RPS15AP62244 130 aaKnown RBP13.64□□□□□ -0.23
SKA1-202ENST00000398452 CSNK1G2P78368 415 aa13.64□□□□□ -0.23
SKA1-202ENST00000398452 REEP5Q00765 189 aa13.64□□□□□ -0.23
SKA1-202ENST00000398452 MEF2AQ02078 507 aaPredicted RBP13.64□□□□□ -0.23
SKA1-202ENST00000398452 CSTF3Q12996 717 aaKnown RBP13.64□□□□□ -0.23
SKA1-202ENST00000398452 MAD2L1Q13257 205 aaPredicted RBP13.64□□□□□ -0.23
SKA1-202ENST00000398452 KIAA1614Q5VZ46 1190 aa13.64□□□□□ -0.23
SKA1-202ENST00000398452 CGB2Q6NT52 195 aa13.64□□□□□ -0.23
SKA1-202ENST00000398452 FIGLAQ6QHK4 219 aa13.64□□□□□ -0.23
SKA1-202ENST00000398452 SCIMPQ6UWF3 145 aa13.64□□□□□ -0.23
SKA1-202ENST00000398452 ATG14Q6ZNE5 492 aa13.64□□□□□ -0.23
SKA1-202ENST00000398452 ZNF438Q7Z4V0 828 aa13.64□□□□□ -0.23
SKA1-202ENST00000398452 ZNF655Q8N720 491 aaPredicted RBP13.64□□□□□ -0.23
SKA1-202ENST00000398452 OR7G3Q8NG95 312 aa13.64□□□□□ -0.23
SKA1-202ENST00000398452 C10orf82Q8WW14 230 aa13.64□□□□□ -0.23
SKA1-202ENST00000398452 STON2Q8WXE9 905 aa13.64□□□□□ -0.23
SKA1-202ENST00000398452 N4BP2L2Q92802 583 aaPredicted RBP13.64□□□□□ -0.23
SKA1-202ENST00000398452 RERGQ96A58 199 aaPredicted RBP13.64□□□□□ -0.23
SKA1-202ENST00000398452 TGM7Q96PF1 710 aa13.64□□□□□ -0.23
SKA1-202ENST00000398452 DPYSL5Q9BPU6 564 aa13.64□□□□□ -0.23
SKA1-202ENST00000398452 RAB33BQ9H082 229 aa13.64□□□□□ -0.23
SKA1-202ENST00000398452 SEMA6CQ9H3T2 930 aa13.64□□□□□ -0.23
SKA1-202ENST00000398452 TNFRSF12AQ9NP84 129 aa13.64□□□□□ -0.23
SKA1-202ENST00000398452 C1GALT1Q9NS00 363 aa13.64□□□□□ -0.23
SKA1-202ENST00000398452 SOHLH2Q9NX45 425 aa13.64□□□□□ -0.23
SKA1-202ENST00000398452 SH2B3Q9UQQ2 575 aa13.64□□□□□ -0.23
SKA1-202ENST00000398452 KCNE1BA0A087WTH5 132 aa13.63□□□□□ -0.23
SKA1-202ENST00000398452 TLCD2A6NGC4 264 aa13.63□□□□□ -0.23
SKA1-202ENST00000398452 CKMT1AP12532 417 aa13.63□□□□□ -0.23
SKA1-202ENST00000398452 EZRP15311 586 aaKnown RBP13.63□□□□□ -0.23
SKA1-202ENST00000398452 CKMT2P17540 419 aa13.63□□□□□ -0.23
SKA1-202ENST00000398452 NCF2P19878 526 aaPredicted RBP13.63□□□□□ -0.23
SKA1-202ENST00000398452 MAGP20916 626 aa13.63□□□□□ -0.23
SKA1-202ENST00000398452 MAPK1P28482 360 aa13.63□□□□□ -0.23
SKA1-202ENST00000398452 EPHA3P29320 983 aa13.63□□□□□ -0.23
SKA1-202ENST00000398452 GRIA3P42263 894 aa13.63□□□□□ -0.23
SKA1-202ENST00000398452 PIK3CBP42338 1070 aa13.63□□□□□ -0.23
SKA1-202ENST00000398452 NEK2P51955 445 aa13.63□□□□□ -0.23
SKA1-202ENST00000398452 STX1BP61266 288 aa13.63□□□□□ -0.23
SKA1-202ENST00000398452 E2F2Q14209 437 aa13.63□□□□□ -0.23
SKA1-202ENST00000398452 NR1D2Q14995 579 aa13.63□□□□□ -0.23
SKA1-202ENST00000398452 ABRAXAS2Q15018 415 aa13.63□□□□□ -0.23
SKA1-202ENST00000398452 RPS6KA2Q15349 733 aa13.63□□□□□ -0.23
SKA1-202ENST00000398452 SLC9B1Q4ZJI4 515 aa13.63□□□□□ -0.23
SKA1-202ENST00000398452 ZC3H12BQ5HYM0 836 aaKnown RBP13.63□□□□□ -0.23
SKA1-202ENST00000398452 TCHHL1Q5QJ38 904 aaPredicted RBP13.63□□□□□ -0.23
SKA1-202ENST00000398452 VWA5B1Q5TIE3 1220 aa13.63□□□□□ -0.23
SKA1-202ENST00000398452 GUSBP11Q6P575 273 aa13.63□□□□□ -0.23
SKA1-202ENST00000398452 RNF165Q6ZSG1 346 aa13.63□□□□□ -0.23
SKA1-202ENST00000398452 CHSY3Q70JA7 882 aa13.63□□□□□ -0.23
SKA1-202ENST00000398452 SPRED1Q7Z699 444 aa13.63□□□□□ -0.23
SKA1-202ENST00000398452 TRIM73Q86UV7 250 aa13.63□□□□□ -0.23
SKA1-202ENST00000398452 FAM129CQ86XR2 697 aa13.63□□□□□ -0.23
SKA1-202ENST00000398452 FAM20CQ8IXL6 584 aa13.63□□□□□ -0.23
SKA1-202ENST00000398452 PARP9Q8IXQ6 854 aa13.63□□□□□ -0.23
SKA1-202ENST00000398452 LAS2Q8IYD9 372 aa13.63□□□□□ -0.23
SKA1-202ENST00000398452 CARFQ8N187 725 aa13.63□□□□□ -0.23
SKA1-202ENST00000398452 TRPV3Q8NET8 790 aa13.63□□□□□ -0.23
SKA1-202ENST00000398452 OR4K1Q8NGD4 311 aa13.63□□□□□ -0.23
SKA1-202ENST00000398452 HUS1BQ8NHY5 278 aa13.63□□□□□ -0.23
SKA1-202ENST00000398452 IFI44Q8TCB0 444 aa13.63□□□□□ -0.23
SKA1-202ENST00000398452 ACTRT2Q8TDY3 377 aa13.63□□□□□ -0.23
SKA1-202ENST00000398452 USP7Q93009 1102 aa13.63□□□□□ -0.23
SKA1-202ENST00000398452 THAP11Q96EK4 314 aa13.63□□□□□ -0.23
SKA1-202ENST00000398452 MTERF1Q99551 399 aaKnown RBP13.63□□□□□ -0.23
SKA1-202ENST00000398452 SERPINI1Q99574 410 aa13.63□□□□□ -0.23
SKA1-202ENST00000398452 CCDC3Q9BQI4 270 aa13.63□□□□□ -0.23
SKA1-202ENST00000398452 NLNQ9BYT8 704 aa13.63□□□□□ -0.23
SKA1-202ENST00000398452 ABCG4Q9H172 646 aa13.63□□□□□ -0.23
SKA1-202ENST00000398452 WDR55Q9H6Y2 383 aaPredicted RBP13.63□□□□□ -0.23
SKA1-202ENST00000398452 BRF2Q9HAW0 419 aa13.63□□□□□ -0.23
SKA1-202ENST00000398452 SLC6A20Q9NP91 592 aa13.63□□□□□ -0.23
SKA1-202ENST00000398452 AHSPQ9NZD4 102 aa13.63□□□□□ -0.23
SKA1-202ENST00000398452 HEY2Q9UBP5 337 aa13.63□□□□□ -0.23
SKA1-202ENST00000398452 EPHA6Q9UF33 1036 aa13.63□□□□□ -0.23
SKA1-202ENST00000398452 KLHL3Q9UH77 587 aa13.63□□□□□ -0.23
SKA1-202ENST00000398452 SLC12A4Q9UP95 1085 aa13.63□□□□□ -0.23
SKA1-202ENST00000398452 ATP6AP2A0A1C7CYW4 349 aa13.62□□□□□ -0.23
SKA1-202ENST00000398452 FEZF1A0PJY2 475 aa13.62□□□□□ -0.23
SKA1-202ENST00000398452 FOXE1O00358 373 aaPredicted RBP13.62□□□□□ -0.23
SKA1-202ENST00000398452 UBDO15205 165 aa13.62□□□□□ -0.23
SKA1-202ENST00000398452 PEX11AO75192 247 aa13.62□□□□□ -0.23
SKA1-202ENST00000398452 SEC22BO75396 215 aa13.62□□□□□ -0.23
SKA1-202ENST00000398452 ATP6AP2O75787 350 aa13.62□□□□□ -0.23
SKA1-202ENST00000398452 RSL1D1O76021 490 aaKnown RBP13.62□□□□□ -0.23
SKA1-202ENST00000398452 RPLP0P05388 317 aaKnown RBP13.62□□□□□ -0.23
SKA1-202ENST00000398452 MYF5P13349 255 aa13.62□□□□□ -0.23
SKA1-202ENST00000398452 CD22P20273 847 aa13.62□□□□□ -0.23
SKA1-202ENST00000398452 PTX3P26022 381 aaPredicted RBP13.62□□□□□ -0.23
SKA1-202ENST00000398452 HTR6P50406 440 aa13.62□□□□□ -0.23
SKA1-202ENST00000398452 RAP1GDS1P52306 607 aa13.62□□□□□ -0.23
SKA1-202ENST00000398452 RGS1Q08116 209 aa13.62□□□□□ -0.23
SKA1-202ENST00000398452 TGM3Q08188 693 aa13.62□□□□□ -0.23
SKA1-202ENST00000398452 CLPPQ16740 277 aaPredicted RBP13.62□□□□□ -0.23
SKA1-202ENST00000398452 UGT3A2Q3SY77 523 aa13.62□□□□□ -0.23
SKA1-202ENST00000398452 GALNTL6Q49A17 601 aa13.62□□□□□ -0.23
SKA1-202ENST00000398452 TMTC4Q5T4D3 741 aa13.62□□□□□ -0.23
SKA1-202ENST00000398452 CACHD1Q5VU97 1274 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms