RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 POU2F3Q9UKI9 436 aa12.27□□□□□ -0.44
SHMT1-205ENST00000395684 A0A1W2PQ67 120 aa12.27□□□□□ -0.45
SHMT1-205ENST00000395684 TBKBP1A7MCY6 615 aa12.27□□□□□ -0.45
SHMT1-205ENST00000395684 GFYI3L273 518 aa12.27□□□□□ -0.45
SHMT1-205ENST00000395684 SUV39H1O43463 412 aa12.27□□□□□ -0.45
SHMT1-205ENST00000395684 NUAK1O60285 661 aa12.27□□□□□ -0.45
SHMT1-205ENST00000395684 DPM1O60762 260 aa12.27□□□□□ -0.45
SHMT1-205ENST00000395684 DBTP11182 482 aaKnown RBP12.27□□□□□ -0.45
SHMT1-205ENST00000395684 SERPINB1P30740 379 aa12.27□□□□□ -0.45
SHMT1-205ENST00000395684 CTSKP43235 329 aa12.27□□□□□ -0.45
SHMT1-205ENST00000395684 CSNK2BP67870 215 aa12.27□□□□□ -0.45
SHMT1-205ENST00000395684 ELP6Q0PNE2 266 aa12.27□□□□□ -0.45
SHMT1-205ENST00000395684 DDX39BQ13838 428 aaKnown RBP12.27□□□□□ -0.45
SHMT1-205ENST00000395684 TCTN1Q2MV58 587 aa12.27□□□□□ -0.45
SHMT1-205ENST00000395684 SERPINA13PQ6UXR4 307 aa12.27□□□□□ -0.45
SHMT1-205ENST00000395684 SCAIQ8N9R8 606 aa12.27□□□□□ -0.45
SHMT1-205ENST00000395684 FAM83FQ8NEG4 500 aaPredicted RBP12.27□□□□□ -0.45
SHMT1-205ENST00000395684 ASIC4Q96FT7 647 aa12.27□□□□□ -0.45
SHMT1-205ENST00000395684 LYSMD1Q96S90 227 aa12.27□□□□□ -0.45
SHMT1-205ENST00000395684 VN1R3Q9BXE9 311 aa12.27□□□□□ -0.45
SHMT1-205ENST00000395684 RUBCNLQ9H714 662 aa12.27□□□□□ -0.45
SHMT1-205ENST00000395684 SP140LQ9H930 580 aa12.27□□□□□ -0.45
SHMT1-205ENST00000395684 RLIMQ9NVW2 624 aa12.27□□□□□ -0.45
SHMT1-205ENST00000395684 VPS29Q9UBQ0 182 aa12.27□□□□□ -0.45
SHMT1-205ENST00000395684 RBMX2Q9Y388 322 aaKnown RBP12.27□□□□□ -0.45
SHMT1-205ENST00000395684 TESMINQ9Y4I5 508 aa12.27□□□□□ -0.45
SHMT1-205ENST00000395684 PCDHGB3Q9Y5G1 929 aa12.27□□□□□ -0.45
SHMT1-205ENST00000395684 IGLV3-16A0A075B6K0 115 aa12.26□□□□□ -0.45
SHMT1-205ENST00000395684 C1orf226A1L170 272 aa12.26□□□□□ -0.45
SHMT1-205ENST00000395684 GABRR3A8MPY1 467 aa12.26□□□□□ -0.45
SHMT1-205ENST00000395684 A8MU76 341 aa12.26□□□□□ -0.45
SHMT1-205ENST00000395684 PRMT3O60678 531 aa12.26□□□□□ -0.45
SHMT1-205ENST00000395684 SH3BGRLO75368 114 aa12.26□□□□□ -0.45
SHMT1-205ENST00000395684 KCNK2O95069 426 aa12.26□□□□□ -0.45
SHMT1-205ENST00000395684 OR56A5P0C7T3 313 aa12.26□□□□□ -0.45
SHMT1-205ENST00000395684 TNFRSF1BP20333 461 aa12.26□□□□□ -0.45
SHMT1-205ENST00000395684 GGT2P36268 569 aa12.26□□□□□ -0.45
SHMT1-205ENST00000395684 NUDT6P53370 316 aa12.26□□□□□ -0.45
SHMT1-205ENST00000395684 TBCEQ15813 527 aaPredicted RBP12.26□□□□□ -0.45
SHMT1-205ENST00000395684 ADNP2Q6IQ32 1131 aa12.26□□□□□ -0.45
SHMT1-205ENST00000395684 RNF180Q86T96 592 aa12.26□□□□□ -0.45
SHMT1-205ENST00000395684 DNAJC22Q8N4W6 341 aa12.26□□□□□ -0.45
SHMT1-205ENST00000395684 ARL14EPQ8N8R7 260 aaPredicted RBP12.26□□□□□ -0.45
SHMT1-205ENST00000395684 WDR20Q8TBZ3 569 aa12.26□□□□□ -0.45
SHMT1-205ENST00000395684 FCGR1BQ92637 280 aa12.26□□□□□ -0.45
SHMT1-205ENST00000395684 C11orf24Q96F05 449 aaPredicted RBP12.26□□□□□ -0.45
SHMT1-205ENST00000395684 SCRN2Q96FV2 425 aa12.26□□□□□ -0.45
SHMT1-205ENST00000395684 DUSP26Q9BV47 211 aa12.26□□□□□ -0.45
SHMT1-205ENST00000395684 CDADC1Q9BWV3 514 aa12.26□□□□□ -0.45
SHMT1-205ENST00000395684 MIR1-1HGQ9H1L0 117 aa12.26□□□□□ -0.45
SHMT1-205ENST00000395684 PLCXD1Q9NUJ7 323 aa12.26□□□□□ -0.45
SHMT1-205ENST00000395684 ITGB1BP2Q9UKP3 347 aa12.26□□□□□ -0.45
SHMT1-205ENST00000395684 LRFN2Q9ULH4 789 aa12.26□□□□□ -0.45
SHMT1-205ENST00000395684 LYVE1Q9Y5Y7 322 aa12.26□□□□□ -0.45
SHMT1-205ENST00000395684 ZNF106Q9H2Y7 1883 aaKnown RBP12.26□□□□□ -0.45
SHMT1-205ENST00000395684 ISPDA4D126 451 aa12.26□□□□□ -0.45
SHMT1-205ENST00000395684 CLCA1A8K7I4 914 aa12.26□□□□□ -0.45
SHMT1-205ENST00000395684 EIF3FO00303 357 aaPredicted RBP12.26□□□□□ -0.45
SHMT1-205ENST00000395684 BNIP3LO60238 219 aa12.26□□□□□ -0.45
SHMT1-205ENST00000395684 MTX2O75431 263 aa12.26□□□□□ -0.45
SHMT1-205ENST00000395684 ETHE1O95571 254 aa12.26□□□□□ -0.45
SHMT1-205ENST00000395684 CDK1P06493 297 aa12.26□□□□□ -0.45
SHMT1-205ENST00000395684 SPNP16150 400 aa12.26□□□□□ -0.45
SHMT1-205ENST00000395684 CSNK1DP48730 415 aa12.26□□□□□ -0.45
SHMT1-205ENST00000395684 CRISP3P54108 245 aa12.26□□□□□ -0.45
SHMT1-205ENST00000395684 IRF8Q02556 426 aa12.26□□□□□ -0.45
SHMT1-205ENST00000395684 GAB1Q13480 694 aa12.26□□□□□ -0.45
SHMT1-205ENST00000395684 TPRG1Q6ZUI0 275 aa12.26□□□□□ -0.45
SHMT1-205ENST00000395684 SLC46A3Q7Z3Q1 461 aa12.26□□□□□ -0.45
SHMT1-205ENST00000395684 NAGSQ8N159 534 aa12.26□□□□□ -0.45
SHMT1-205ENST00000395684 SLC5A8Q8N695 610 aa12.26□□□□□ -0.45
SHMT1-205ENST00000395684 POC5Q8NA72 575 aa12.26□□□□□ -0.45
SHMT1-205ENST00000395684 ZNF461Q8TAF7 563 aa12.26□□□□□ -0.45
SHMT1-205ENST00000395684 CORO1BQ9BR76 489 aa12.26□□□□□ -0.45
SHMT1-205ENST00000395684 DOHHQ9BU89 302 aa12.26□□□□□ -0.45
SHMT1-205ENST00000395684 RAD18Q9NS91 495 aa12.26□□□□□ -0.45
SHMT1-205ENST00000395684 FKBP14Q9NWM8 211 aa12.26□□□□□ -0.45
SHMT1-205ENST00000395684 GPR83Q9NYM4 423 aa12.26□□□□□ -0.45
SHMT1-205ENST00000395684 NDUFAF4Q9P032 175 aa12.26□□□□□ -0.45
SHMT1-205ENST00000395684 PADI2Q9Y2J8 665 aa12.26□□□□□ -0.45
SHMT1-205ENST00000395684 TSC22D4Q9Y3Q8 395 aa12.26□□□□□ -0.45
SHMT1-205ENST00000395684 TAF4O00268 1085 aa12.25□□□□□ -0.45
SHMT1-205ENST00000395684 PCDH7O60245 1069 aa12.25□□□□□ -0.45
SHMT1-205ENST00000395684 OXSR1O95747 527 aaPredicted RBP12.25□□□□□ -0.45
SHMT1-205ENST00000395684 STSP08842 583 aa12.25□□□□□ -0.45
SHMT1-205ENST00000395684 PCSK2P16519 638 aa12.25□□□□□ -0.45
SHMT1-205ENST00000395684 MAGP20916 626 aa12.25□□□□□ -0.45
SHMT1-205ENST00000395684 GTF2E2P29084 291 aaKnown RBP12.25□□□□□ -0.45
SHMT1-205ENST00000395684 SERPINA4P29622 427 aa12.25□□□□□ -0.45
SHMT1-205ENST00000395684 MAPK8P45983 427 aa12.25□□□□□ -0.45
SHMT1-205ENST00000395684 CASP9P55211 416 aa12.25□□□□□ -0.45
SHMT1-205ENST00000395684 RGNQ15493 299 aa12.25□□□□□ -0.45
SHMT1-205ENST00000395684 ZNF181Q2M3W8 571 aa12.25□□□□□ -0.45
SHMT1-205ENST00000395684 LRRC73Q5JTD7 316 aa12.25□□□□□ -0.45
SHMT1-205ENST00000395684 DDX59Q5T1V6 619 aaKnown RBP eCLIP12.25□□□□□ -0.45
SHMT1-205ENST00000395684 MLIPQ5VWP3 458 aa12.25□□□□□ -0.45
SHMT1-205ENST00000395684 Q6ZNB5 142 aa12.25□□□□□ -0.45
SHMT1-205ENST00000395684 CRIPAKQ8N1N5 446 aa12.25□□□□□ -0.45
SHMT1-205ENST00000395684 OR52J3Q8NH60 311 aa12.25□□□□□ -0.45
SHMT1-205ENST00000395684 ZNF675Q8TD23 568 aa12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms