RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 RAP2CQ9Y3L5 183 aa9.95□□□□□ -0.82
COL6A3-205ENST00000392004 SDK2Q58EX2 2172 aa9.94□□□□□ -0.82
COL6A3-205ENST00000392004 CCDC154A6NI56 674 aa9.94□□□□□ -0.82
COL6A3-205ENST00000392004 SOBPA7XYQ1 873 aa9.94□□□□□ -0.82
COL6A3-205ENST00000392004 H3BNX3 289 aa9.94□□□□□ -0.82
COL6A3-205ENST00000392004 DUX1O43812 170 aa9.94□□□□□ -0.82
COL6A3-205ENST00000392004 NUAK1O60285 661 aa9.94□□□□□ -0.82
COL6A3-205ENST00000392004 NOL3O60936 208 aaKnown RBP9.94□□□□□ -0.82
COL6A3-205ENST00000392004 OR2B3O76000 313 aa9.94□□□□□ -0.82
COL6A3-205ENST00000392004 PEX11BO96011 259 aa9.94□□□□□ -0.82
COL6A3-205ENST00000392004 NDUFS1P28331 727 aa9.94□□□□□ -0.82
COL6A3-205ENST00000392004 RYKP34925 604 aa9.94□□□□□ -0.82
COL6A3-205ENST00000392004 MPLP40238 635 aa9.94□□□□□ -0.82
COL6A3-205ENST00000392004 PNLIPRP1P54315 467 aa9.94□□□□□ -0.82
COL6A3-205ENST00000392004 OR1D5P58170 312 aa9.94□□□□□ -0.82
COL6A3-205ENST00000392004 RPS13P62277 151 aaKnown RBP9.94□□□□□ -0.82
COL6A3-205ENST00000392004 SKP1P63208 163 aa9.94□□□□□ -0.82
COL6A3-205ENST00000392004 GCNT7Q6ZNI0 430 aa9.94□□□□□ -0.82
COL6A3-205ENST00000392004 ZNF683Q8IZ20 524 aa9.94□□□□□ -0.82
COL6A3-205ENST00000392004 C1orf52Q8N6N3 182 aaKnown RBP9.94□□□□□ -0.82
COL6A3-205ENST00000392004 DTWD2Q8NBA8 298 aa9.94□□□□□ -0.82
COL6A3-205ENST00000392004 OR52E1Q8NGJ3 308 aa9.94□□□□□ -0.82
COL6A3-205ENST00000392004 CD200R1Q8TD46 325 aa9.94□□□□□ -0.82
COL6A3-205ENST00000392004 SLC37A2Q8TED4 501 aa9.94□□□□□ -0.82
COL6A3-205ENST00000392004 FAM162AQ96A26 154 aa9.94□□□□□ -0.82
COL6A3-205ENST00000392004 JSRP1Q96MG2 331 aaPredicted RBP9.94□□□□□ -0.82
COL6A3-205ENST00000392004 C5AR2Q9P296 337 aa9.94□□□□□ -0.82
COL6A3-205ENST00000392004 DKK3Q9UBP4 350 aa9.94□□□□□ -0.82
COL6A3-205ENST00000392004 COL4A6Q14031 1691 aa9.94□□□□□ -0.82
COL6A3-205ENST00000392004 A0A1W2PPC4 97 aa9.94□□□□□ -0.82
COL6A3-205ENST00000392004 ARHGEF33A8MVX0 844 aa9.94□□□□□ -0.82
COL6A3-205ENST00000392004 CAPN5O15484 640 aaPredicted RBP9.94□□□□□ -0.82
COL6A3-205ENST00000392004 CPN2P22792 545 aa9.94□□□□□ -0.82
COL6A3-205ENST00000392004 MAPK1P28482 360 aa9.94□□□□□ -0.82
COL6A3-205ENST00000392004 MYBPC1Q00872 1141 aa9.94□□□□□ -0.82
COL6A3-205ENST00000392004 ZYG11AQ6WRX3 759 aa9.94□□□□□ -0.82
COL6A3-205ENST00000392004 TIFABQ6ZNK6 161 aa9.94□□□□□ -0.82
COL6A3-205ENST00000392004 TAGAPQ8N103 731 aa9.94□□□□□ -0.82
COL6A3-205ENST00000392004 MINDY1Q8N5J2 469 aa9.94□□□□□ -0.82
COL6A3-205ENST00000392004 PTERQ96BW5 349 aa9.94□□□□□ -0.82
COL6A3-205ENST00000392004 CAMK1GQ96NX5 476 aa9.94□□□□□ -0.82
COL6A3-205ENST00000392004 PANX1Q96RD7 426 aa9.94□□□□□ -0.82
COL6A3-205ENST00000392004 F2RL3Q96RI0 385 aa9.94□□□□□ -0.82
COL6A3-205ENST00000392004 PKP4Q99569 1192 aa9.94□□□□□ -0.82
COL6A3-205ENST00000392004 SEPHS2Q99611 448 aa9.94□□□□□ -0.82
COL6A3-205ENST00000392004 EFHD1Q9BUP0 239 aa9.94□□□□□ -0.82
COL6A3-205ENST00000392004 SLC32A1Q9H598 525 aa9.94□□□□□ -0.82
COL6A3-205ENST00000392004 ANKHQ9HCJ1 492 aa9.94□□□□□ -0.82
COL6A3-205ENST00000392004 SCHIP1Q9P0W5 487 aaPredicted RBP9.94□□□□□ -0.82
COL6A3-205ENST00000392004 HCN3Q9P1Z3 774 aa9.94□□□□□ -0.82
COL6A3-205ENST00000392004 MYRFQ9Y2G1 1151 aa9.94□□□□□ -0.82
COL6A3-205ENST00000392004 PCDHB11Q9Y5F2 797 aa9.94□□□□□ -0.82
COL6A3-205ENST00000392004 KERAO60938 352 aa9.94□□□□□ -0.82
COL6A3-205ENST00000392004 KLK3P07288 261 aaPredicted RBP9.94□□□□□ -0.82
COL6A3-205ENST00000392004 PIK3R1P27986 724 aa9.94□□□□□ -0.82
COL6A3-205ENST00000392004 METTL21CQ5VZV1 264 aa9.94□□□□□ -0.82
COL6A3-205ENST00000392004 BORAQ6PGQ7 559 aa9.94□□□□□ -0.82
COL6A3-205ENST00000392004 GPR141Q7Z602 305 aa9.94□□□□□ -0.82
COL6A3-205ENST00000392004 FNDC8Q8TC99 324 aa9.94□□□□□ -0.82
COL6A3-205ENST00000392004 XAGE5Q8WWM1 108 aa9.94□□□□□ -0.82
COL6A3-205ENST00000392004 FIG4Q92562 907 aa9.94□□□□□ -0.82
COL6A3-205ENST00000392004 SLC22A18Q96BI1 424 aa9.94□□□□□ -0.82
COL6A3-205ENST00000392004 SDCCAG3Q96C92 435 aa9.94□□□□□ -0.82
COL6A3-205ENST00000392004 THAP11Q96EK4 314 aa9.94□□□□□ -0.82
COL6A3-205ENST00000392004 C19orf60Q96EN9 201 aa9.94□□□□□ -0.82
COL6A3-205ENST00000392004 HDAC8Q9BY41 377 aa9.94□□□□□ -0.82
COL6A3-205ENST00000392004 LDHAL6BQ9BYZ2 381 aaPredicted RBP9.94□□□□□ -0.82
COL6A3-205ENST00000392004 TFB2MQ9H5Q4 396 aaKnown RBP9.94□□□□□ -0.82
COL6A3-205ENST00000392004 NDUFAF1Q9Y375 327 aa9.94□□□□□ -0.82
COL6A3-205ENST00000392004 A0A1W2PQF6 199 aa9.93□□□□□ -0.82
COL6A3-205ENST00000392004 FAM149AA5PLN7 773 aa9.93□□□□□ -0.82
COL6A3-205ENST00000392004 MAGEB3O15480 346 aa9.93□□□□□ -0.82
COL6A3-205ENST00000392004 CELA2BP08218 269 aaPredicted RBP9.93□□□□□ -0.82
COL6A3-205ENST00000392004 SLC5A2P31639 672 aa9.93□□□□□ -0.82
COL6A3-205ENST00000392004 FEN1P39748 380 aaKnown RBP9.93□□□□□ -0.82
COL6A3-205ENST00000392004 CCT8P50990 548 aa9.93□□□□□ -0.82
COL6A3-205ENST00000392004 TUBB3Q13509 450 aa9.93□□□□□ -0.82
COL6A3-205ENST00000392004 MAPRE2Q15555 327 aa9.93□□□□□ -0.82
COL6A3-205ENST00000392004 NRF1Q16656 503 aa9.93□□□□□ -0.82
COL6A3-205ENST00000392004 PAGE2Q7Z2X7 111 aa9.93□□□□□ -0.82
COL6A3-205ENST00000392004 GOLGA7Q7Z5G4 137 aa9.93□□□□□ -0.82
COL6A3-205ENST00000392004 ZC3H7AQ8IWR0 971 aaKnown RBP9.93□□□□□ -0.82
COL6A3-205ENST00000392004 SLC22A15Q8IZD6 547 aa9.93□□□□□ -0.82
COL6A3-205ENST00000392004 SLC5A11Q8WWX8 675 aa9.93□□□□□ -0.82
COL6A3-205ENST00000392004 RMND5BQ96G75 393 aaPredicted RBP9.93□□□□□ -0.82
COL6A3-205ENST00000392004 TMEM79Q9BSE2 394 aa9.93□□□□□ -0.82
COL6A3-205ENST00000392004 EFCAB1Q9HAE3 211 aa9.93□□□□□ -0.82
COL6A3-205ENST00000392004 TBCCD1Q9NVR7 557 aa9.93□□□□□ -0.82
COL6A3-205ENST00000392004 PCDHGA11Q9Y5H2 935 aa9.93□□□□□ -0.82
COL6A3-205ENST00000392004 CBFA2T3O75081 653 aa9.93□□□□□ -0.82
COL6A3-205ENST00000392004 B3GALT4O96024 378 aa9.93□□□□□ -0.82
COL6A3-205ENST00000392004 F3P13726 295 aa9.93□□□□□ -0.82
COL6A3-205ENST00000392004 MAPKAPK3Q16644 382 aa9.93□□□□□ -0.82
COL6A3-205ENST00000392004 HLA-BQ31612 363 aa9.93□□□□□ -0.82
COL6A3-205ENST00000392004 C3orf38Q5JPI3 329 aa9.93□□□□□ -0.82
COL6A3-205ENST00000392004 ATP6V1C2Q8NEY4 427 aa9.93□□□□□ -0.82
COL6A3-205ENST00000392004 KIAA1191Q96A73 305 aa9.93□□□□□ -0.82
COL6A3-205ENST00000392004 VPS33AQ96AX1 596 aa9.93□□□□□ -0.82
COL6A3-205ENST00000392004 PPCDCQ96CD2 204 aa9.93□□□□□ -0.82
COL6A3-205ENST00000392004 FAM120BQ96EK7 910 aaKnown RBP9.93□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms