RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 OR52B2Q96RD2 323 aa7.14□□□□□ -1.27
VPS13A-202ENST00000357409 CD207Q9UJ71 328 aa7.14□□□□□ -1.27
VPS13A-202ENST00000357409 NPIPA1Q9UND3 350 aa7.14□□□□□ -1.27
VPS13A-202ENST00000357409 NFS1Q9Y697 457 aa7.14□□□□□ -1.27
VPS13A-202ENST00000357409 IGLV3-22A0A075B6J6 115 aa7.13□□□□□ -1.27
VPS13A-202ENST00000357409 CAPN14A8MX76 684 aa7.13□□□□□ -1.27
VPS13A-202ENST00000357409 CLIC1O00299 241 aa7.13□□□□□ -1.27
VPS13A-202ENST00000357409 NAA10P41227 235 aaPredicted RBP7.13□□□□□ -1.27
VPS13A-202ENST00000357409 NSG1P42857 185 aa7.13□□□□□ -1.27
VPS13A-202ENST00000357409 MS4A13Q5J8X5 152 aa7.13□□□□□ -1.27
VPS13A-202ENST00000357409 ABHD13Q7L211 337 aa7.13□□□□□ -1.27
VPS13A-202ENST00000357409 GATA5Q9BWX5 397 aaPredicted RBP7.13□□□□□ -1.27
VPS13A-202ENST00000357409 RETREG1Q9H6L5 497 aa7.13□□□□□ -1.27
VPS13A-202ENST00000357409 SPHK2Q9NRA0 654 aa7.13□□□□□ -1.27
VPS13A-202ENST00000357409 CLCA1A8K7I4 914 aa7.13□□□□□ -1.27
VPS13A-202ENST00000357409 KMOO15229 486 aa7.13□□□□□ -1.27
VPS13A-202ENST00000357409 PRKNO60260 465 aaPredicted RBP7.13□□□□□ -1.27
VPS13A-202ENST00000357409 IQCF3P0C7M6 154 aa7.13□□□□□ -1.27
VPS13A-202ENST00000357409 UROSP10746 265 aa7.13□□□□□ -1.27
VPS13A-202ENST00000357409 PSKH1P11801 424 aa7.13□□□□□ -1.27
VPS13A-202ENST00000357409 TGM1P22735 817 aa7.13□□□□□ -1.27
VPS13A-202ENST00000357409 TUBG1P23258 451 aa7.13□□□□□ -1.27
VPS13A-202ENST00000357409 ATAD3CQ5T2N8 411 aa7.13□□□□□ -1.27
VPS13A-202ENST00000357409 GPRC6AQ5T6X5 926 aa7.13□□□□□ -1.27
VPS13A-202ENST00000357409 MZT2BQ6NZ67 158 aa7.13□□□□□ -1.27
VPS13A-202ENST00000357409 TICAM1Q8IUC6 712 aa7.13□□□□□ -1.27
VPS13A-202ENST00000357409 HSFX4A0A1B0GTS1 333 aaPredicted RBP7.13□□□□□ -1.27
VPS13A-202ENST00000357409 A0A1B0GW55 424 aa7.13□□□□□ -1.27
VPS13A-202ENST00000357409 HSFX3A0A1B0GWH4 333 aaPredicted RBP7.13□□□□□ -1.27
VPS13A-202ENST00000357409 TGM5O43548 720 aa7.13□□□□□ -1.27
VPS13A-202ENST00000357409 UNC5CO95185 931 aa7.13□□□□□ -1.27
VPS13A-202ENST00000357409 DUX4L2P0CJ85 424 aa7.13□□□□□ -1.27
VPS13A-202ENST00000357409 DUX4L3P0CJ86 424 aa7.13□□□□□ -1.27
VPS13A-202ENST00000357409 DUX4L4P0CJ87 422 aa7.13□□□□□ -1.27
VPS13A-202ENST00000357409 DUX4L5P0CJ88 424 aa7.13□□□□□ -1.27
VPS13A-202ENST00000357409 DUX4L6P0CJ89 424 aa7.13□□□□□ -1.27
VPS13A-202ENST00000357409 DUX4L7P0CJ90 424 aa7.13□□□□□ -1.27
VPS13A-202ENST00000357409 FCGR1AP12314 374 aa7.13□□□□□ -1.27
VPS13A-202ENST00000357409 PVRP15151 417 aa7.13□□□□□ -1.27
VPS13A-202ENST00000357409 L1CAMP32004 1257 aa7.13□□□□□ -1.27
VPS13A-202ENST00000357409 FNTBP49356 437 aa7.13□□□□□ -1.27
VPS13A-202ENST00000357409 IL10RBQ08334 325 aa7.13□□□□□ -1.27
VPS13A-202ENST00000357409 PPP1R3AQ16821 1122 aa7.13□□□□□ -1.27
VPS13A-202ENST00000357409 RTP2Q5QGT7 225 aa7.13□□□□□ -1.27
VPS13A-202ENST00000357409 ZNF782Q6ZMW2 699 aaPredicted RBP7.13□□□□□ -1.27
VPS13A-202ENST00000357409 MSANTD1Q6ZTZ1 278 aa7.13□□□□□ -1.27
VPS13A-202ENST00000357409 ZNF283Q8N7M2 679 aa7.13□□□□□ -1.27
VPS13A-202ENST00000357409 STARD8Q92502 1023 aa7.13□□□□□ -1.27
VPS13A-202ENST00000357409 DIO2Q92813 273 aa7.13□□□□□ -1.27
VPS13A-202ENST00000357409 HNRNPABQ99729 332 aaKnown RBP7.13□□□□□ -1.27
VPS13A-202ENST00000357409 AKTIPQ9H8T0 292 aa7.13□□□□□ -1.27
VPS13A-202ENST00000357409 DUX4Q9UBX2 424 aa7.13□□□□□ -1.27
VPS13A-202ENST00000357409 SPIN1Q9Y657 262 aaPredicted RBP7.13□□□□□ -1.27
VPS13A-202ENST00000357409 AHCYL1O43865 530 aa7.13□□□□□ -1.27
VPS13A-202ENST00000357409 ECI2O75521 394 aa7.13□□□□□ -1.27
VPS13A-202ENST00000357409 AP2A1O95782 977 aa7.13□□□□□ -1.27
VPS13A-202ENST00000357409 CDH11P55287 796 aa7.13□□□□□ -1.27
VPS13A-202ENST00000357409 CD83Q01151 205 aa7.13□□□□□ -1.27
VPS13A-202ENST00000357409 RAB39AQ14964 217 aa7.13□□□□□ -1.27
VPS13A-202ENST00000357409 SH3D19Q5HYK7 790 aa7.13□□□□□ -1.27
VPS13A-202ENST00000357409 ART4Q93070 314 aa7.13□□□□□ -1.27
VPS13A-202ENST00000357409 FADS3Q9Y5Q0 445 aa7.13□□□□□ -1.27
VPS13A-202ENST00000357409 M0QX08 132 aa7.13□□□□□ -1.27
VPS13A-202ENST00000357409 MAZP56270 477 aaKnown RBP7.13□□□□□ -1.27
VPS13A-202ENST00000357409 MOGSQ13724 837 aa7.13□□□□□ -1.27
VPS13A-202ENST00000357409 NFE2L1Q14494 772 aa7.13□□□□□ -1.27
VPS13A-202ENST00000357409 RBM48Q5RL73 367 aaKnown RBP7.13□□□□□ -1.27
VPS13A-202ENST00000357409 TRAPPC6BQ86SZ2 158 aa7.13□□□□□ -1.27
VPS13A-202ENST00000357409 MCFD2Q8NI22 146 aa7.13□□□□□ -1.27
VPS13A-202ENST00000357409 CPT1CQ8TCG5 803 aa7.13□□□□□ -1.27
VPS13A-202ENST00000357409 ZNF778Q96MU6 729 aa7.13□□□□□ -1.27
VPS13A-202ENST00000357409 ZNF578Q96N58 590 aaPredicted RBP7.13□□□□□ -1.27
VPS13A-202ENST00000357409 RAD9AQ99638 391 aa7.13□□□□□ -1.27
VPS13A-202ENST00000357409 R3HDMLQ9H3Y0 253 aa7.13□□□□□ -1.27
VPS13A-202ENST00000357409 POLE4Q9NR33 117 aa7.13□□□□□ -1.27
VPS13A-202ENST00000357409 HAO2Q9NYQ3 351 aa7.13□□□□□ -1.27
VPS13A-202ENST00000357409 CLTCL1P53675 1640 aa7.13□□□□□ -1.27
VPS13A-202ENST00000357409 PRAMEF33A0A0G2JMD5 474 aa7.13□□□□□ -1.27
VPS13A-202ENST00000357409 A0A1W2PRQ8 180 aa7.13□□□□□ -1.27
VPS13A-202ENST00000357409 PRAMEF10O60809 474 aa7.13□□□□□ -1.27
VPS13A-202ENST00000357409 EDNRBP24530 442 aa7.13□□□□□ -1.27
VPS13A-202ENST00000357409 S100A10P60903 97 aa7.13□□□□□ -1.27
VPS13A-202ENST00000357409 FXNQ16595 210 aa7.13□□□□□ -1.27
VPS13A-202ENST00000357409 GOLGA7Q7Z5G4 137 aa7.13□□□□□ -1.27
VPS13A-202ENST00000357409 TREML1Q86YW5 311 aa7.13□□□□□ -1.27
VPS13A-202ENST00000357409 LAS2Q8IYD9 372 aa7.13□□□□□ -1.27
VPS13A-202ENST00000357409 LRRC17Q8N6Y2 441 aa7.13□□□□□ -1.27
VPS13A-202ENST00000357409 YIPF7Q8N8F6 280 aa7.13□□□□□ -1.27
VPS13A-202ENST00000357409 STK32AQ8WU08 396 aa7.13□□□□□ -1.27
VPS13A-202ENST00000357409 TCEAL4Q96EI5 215 aa7.13□□□□□ -1.27
VPS13A-202ENST00000357409 MCCC1Q96RQ3 725 aaPredicted RBP7.13□□□□□ -1.27
VPS13A-202ENST00000357409 SLC25A51Q9H1U9 297 aa7.13□□□□□ -1.27
VPS13A-202ENST00000357409 MAGEH1Q9H213 219 aa7.13□□□□□ -1.27
VPS13A-202ENST00000357409 IRAK2O43187 625 aa7.13□□□□□ -1.27
VPS13A-202ENST00000357409 ZNF189O75820 626 aaPredicted RBP7.13□□□□□ -1.27
VPS13A-202ENST00000357409 IGHV3-9P01782 118 aa7.13□□□□□ -1.27
VPS13A-202ENST00000357409 STT3AP46977 705 aa7.13□□□□□ -1.27
VPS13A-202ENST00000357409 ARG2P78540 354 aa7.13□□□□□ -1.27
VPS13A-202ENST00000357409 PRR5P85299 388 aa7.13□□□□□ -1.27
VPS13A-202ENST00000357409 CREB3L1Q96BA8 519 aa7.13□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 66.9 ms