RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 ARFIP2P53365 341 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 NAGLUP54802 743 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 AQP4P55087 323 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 RPL26P61254 145 aaKnown RBP2.24□□□□□ -2.05
VPS54-202ENST00000354504 ADARB1P78563 741 aaKnown RBP2.24□□□□□ -2.05
VPS54-202ENST00000354504 TXNL4AP83876 142 aaKnown RBP2.24□□□□□ -2.05
VPS54-202ENST00000354504 SRSF3P84103 164 aaKnown RBP2.24□□□□□ -2.05
VPS54-202ENST00000354504 TSPY1Q01534 308 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 MGAT2Q10469 447 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 PDE7AQ13946 482 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 TSNQ15631 228 aaKnown RBP2.24□□□□□ -2.05
VPS54-202ENST00000354504 CEBPEQ15744 281 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 TBCCQ15814 346 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 FAM214AQ32MH5 1076 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 ATP13A5Q4VNC0 1218 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 RFTN2Q52LD8 501 aaPredicted RBP2.24□□□□□ -2.05
VPS54-202ENST00000354504 HECTD3Q5T447 861 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 PIP5KL1Q5T9C9 394 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 LCN8Q6JVE9 175 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 METTL2BQ6P1Q9 378 aaKnown RBP2.24□□□□□ -2.05
VPS54-202ENST00000354504 SYCE2Q6PIF2 218 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 SERPINA13PQ6UXR4 307 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 FAM83HQ6ZRV2 1179 aaPredicted RBP2.24□□□□□ -2.05
VPS54-202ENST00000354504 CPLX4Q7Z7G2 160 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 ZFAND4Q86XD8 727 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 PTOV1Q86YD1 416 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 CAMK1DQ8IU85 385 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 NUDCD3Q8IVD9 361 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 SLC15A3Q8IY34 581 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 PGAM4Q8N0Y7 254 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 RNF175Q8N4F7 328 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 ATP6V0D2Q8N8Y2 350 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 LRRC8CQ8TDW0 803 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 GTF2H4Q92759 462 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 ATXN7L3BQ96GX2 97 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 KIRREL1Q96J84 757 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 ZNF512Q96ME7 567 aaPredicted RBP2.24□□□□□ -2.05
VPS54-202ENST00000354504 ZNF382Q96SR6 550 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 PKP2Q99959 881 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 TRIM62Q9BVG3 475 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 FAM107BQ9H098 131 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 SIK2Q9H0K1 926 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 KCNH6Q9H252 994 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 FAM96AQ9H5X1 160 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 TRPC7Q9HCX4 862 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 LTB4R2Q9NPC1 389 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 KCNK9Q9NPC2 374 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 CD93Q9NPY3 652 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 TMEM74BQ9NUR3 256 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 TMEM184CQ9NVA4 438 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 PAK1IP1Q9NWT1 392 aaPredicted RBP2.24□□□□□ -2.05
VPS54-202ENST00000354504 KLHL8Q9P2G9 620 aaPredicted RBP2.24□□□□□ -2.05
VPS54-202ENST00000354504 CPSF2Q9P2I0 782 aaKnown RBP2.24□□□□□ -2.05
VPS54-202ENST00000354504 DKK3Q9UBP4 350 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 SLC39A10Q9ULF5 831 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 ZFR2Q9UPR6 939 aaKnown RBP2.24□□□□□ -2.05
VPS54-202ENST00000354504 CLDN16Q9Y5I7 305 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 CPQQ9Y646 472 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 GON4LQ3T8J9 2241 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 SDK1Q7Z5N4 2213 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 MYO7AQ13402 2215 aa2.23□□□□□ -2.05
VPS54-202ENST00000354504 MPDZO75970 2070 aa2.23□□□□□ -2.05
VPS54-202ENST00000354504 A0A0G2JND7 137 aa2.23□□□□□ -2.05
VPS54-202ENST00000354504 ANHXE9PGG2 379 aa2.23□□□□□ -2.05
VPS54-202ENST00000354504 H3BML4 177 aa2.23□□□□□ -2.05
VPS54-202ENST00000354504 H7C4K7 107 aa2.23□□□□□ -2.05
VPS54-202ENST00000354504 IFRD1O00458 451 aaPredicted RBP2.23□□□□□ -2.05
VPS54-202ENST00000354504 PIP5K1BO14986 540 aa2.23□□□□□ -2.05
VPS54-202ENST00000354504 DCXO43602 365 aa2.23□□□□□ -2.05
VPS54-202ENST00000354504 NUAK1O60285 661 aa2.23□□□□□ -2.05
VPS54-202ENST00000354504 HNRNPCL1O60812 293 aaKnown RBP2.23□□□□□ -2.05
VPS54-202ENST00000354504 CCDC22O60826 627 aa2.23□□□□□ -2.05
VPS54-202ENST00000354504 ITGA10O75578 1167 aa2.23□□□□□ -2.05
VPS54-202ENST00000354504 SRP72O76094 671 aaKnown RBP2.23□□□□□ -2.05
VPS54-202ENST00000354504 SLC2A3P11169 496 aa2.23□□□□□ -2.05
VPS54-202ENST00000354504 PTPN2P17706 415 aa2.23□□□□□ -2.05
VPS54-202ENST00000354504 ALDH3B2P48448 385 aa2.23□□□□□ -2.05
VPS54-202ENST00000354504 SPINT3P49223 89 aa2.23□□□□□ -2.05
VPS54-202ENST00000354504 EFNA3P52797 238 aa2.23□□□□□ -2.05
VPS54-202ENST00000354504 GAS1P54826 345 aa2.23□□□□□ -2.05
VPS54-202ENST00000354504 ALDH18A1P54886 795 aaKnown RBP2.23□□□□□ -2.05
VPS54-202ENST00000354504 SNX16P57768 344 aa2.23□□□□□ -2.05
VPS54-202ENST00000354504 NKX6-1P78426 367 aaPredicted RBP2.23□□□□□ -2.05
VPS54-202ENST00000354504 NTHL1P78549 312 aa2.23□□□□□ -2.05
VPS54-202ENST00000354504 GRIK2Q13002 908 aa2.23□□□□□ -2.05
VPS54-202ENST00000354504 BFSP2Q13515 415 aa2.23□□□□□ -2.05
VPS54-202ENST00000354504 MLF2Q15773 248 aaPredicted RBP2.23□□□□□ -2.05
VPS54-202ENST00000354504 SMU1Q2TAY7 513 aa2.23□□□□□ -2.05
VPS54-202ENST00000354504 ARL13BQ3SXY8 428 aa2.23□□□□□ -2.05
VPS54-202ENST00000354504 PDCD4Q53EL6 469 aaKnown RBP2.23□□□□□ -2.05
VPS54-202ENST00000354504 FBXO48Q5FWF7 155 aa2.23□□□□□ -2.05
VPS54-202ENST00000354504 TPRG1LQ5T0D9 272 aa2.23□□□□□ -2.05
VPS54-202ENST00000354504 XAF1Q6GPH4 301 aa2.23□□□□□ -2.05
VPS54-202ENST00000354504 ITPRIPL1Q6GPH6 555 aa2.23□□□□□ -2.05
VPS54-202ENST00000354504 AAGABQ6PD74 315 aa2.23□□□□□ -2.05
VPS54-202ENST00000354504 VITQ6UXI7 678 aa2.23□□□□□ -2.05
VPS54-202ENST00000354504 GDPD4Q6W3E5 623 aa2.23□□□□□ -2.05
VPS54-202ENST00000354504 DPPA4Q7L190 304 aa2.23□□□□□ -2.05
VPS54-202ENST00000354504 GOLGA7Q7Z5G4 137 aa2.23□□□□□ -2.05
VPS54-202ENST00000354504 WDR53Q7Z5U6 358 aaPredicted RBP2.23□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms