RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 ZWINTO95229 277 aa21.17■□□□□ 0.98
SHMT1-203ENST00000354098 NTRK1P04629 796 aa21.17■□□□□ 0.98
SHMT1-203ENST00000354098 SCTRP47872 440 aa21.17■□□□□ 0.98
SHMT1-203ENST00000354098 HKDC1Q2TB90 917 aa21.17■□□□□ 0.98
SHMT1-203ENST00000354098 FAM219BQ5XKK7 198 aa21.17■□□□□ 0.98
SHMT1-203ENST00000354098 ADNP2Q6IQ32 1131 aa21.17■□□□□ 0.98
SHMT1-203ENST00000354098 MYLK4Q86YV6 388 aaPredicted RBP21.17■□□□□ 0.98
SHMT1-203ENST00000354098 TMEM126BQ8IUX1 230 aa21.17■□□□□ 0.98
SHMT1-203ENST00000354098 GPR135Q8IZ08 494 aa21.17■□□□□ 0.98
SHMT1-203ENST00000354098 ZNF655Q8N720 491 aaPredicted RBP21.17■□□□□ 0.98
SHMT1-203ENST00000354098 MFSD9Q8NBP5 474 aa21.17■□□□□ 0.98
SHMT1-203ENST00000354098 TEFMQ96QE5 360 aaKnown RBP21.17■□□□□ 0.98
SHMT1-203ENST00000354098 TMEM121BQ9BXQ6 578 aaPredicted RBP21.17■□□□□ 0.98
SHMT1-203ENST00000354098 RNF11Q9Y3C5 154 aa21.17■□□□□ 0.98
SHMT1-203ENST00000354098 PCDHGA7Q9Y5G6 932 aa21.17■□□□□ 0.98
SHMT1-203ENST00000354098 ZNF749O43361 778 aa21.16■□□□□ 0.98
SHMT1-203ENST00000354098 TRIM13O60858 407 aa21.16■□□□□ 0.98
SHMT1-203ENST00000354098 BPGMP07738 259 aa21.16■□□□□ 0.98
SHMT1-203ENST00000354098 ARL1P40616 181 aaPredicted RBP21.16■□□□□ 0.98
SHMT1-203ENST00000354098 CCR10P46092 362 aa21.16■□□□□ 0.98
SHMT1-203ENST00000354098 SERPINB4P48594 390 aa21.16■□□□□ 0.98
SHMT1-203ENST00000354098 CCNG1P51959 295 aa21.16■□□□□ 0.98
SHMT1-203ENST00000354098 TRAF3Q13114 568 aa21.16■□□□□ 0.98
SHMT1-203ENST00000354098 RBBP7Q16576 425 aa21.16■□□□□ 0.98
SHMT1-203ENST00000354098 TMIGD1Q6UXZ0 262 aa21.16■□□□□ 0.98
SHMT1-203ENST00000354098 SLC38A9Q8NBW4 561 aa21.16■□□□□ 0.98
SHMT1-203ENST00000354098 RERGQ96A58 199 aaPredicted RBP21.16■□□□□ 0.98
SHMT1-203ENST00000354098 ZPBPQ9BS86 351 aa21.16■□□□□ 0.98
SHMT1-203ENST00000354098 EFCAB11Q9BUY7 163 aa21.16■□□□□ 0.98
SHMT1-203ENST00000354098 NTMT1Q9BV86 223 aa21.16■□□□□ 0.98
SHMT1-203ENST00000354098 GATA5Q9BWX5 397 aaPredicted RBP21.16■□□□□ 0.98
SHMT1-203ENST00000354098 ULBP3Q9BZM4 244 aa21.16■□□□□ 0.98
SHMT1-203ENST00000354098 WDR91A4D1P6 747 aa21.15■□□□□ 0.98
SHMT1-203ENST00000354098 ZSCAN9O15535 394 aaPredicted RBP21.15■□□□□ 0.98
SHMT1-203ENST00000354098 KIAA0754O94854 1291 aa21.15■□□□□ 0.98
SHMT1-203ENST00000354098 DHRS4L1P0CG22 281 aa21.15■□□□□ 0.98
SHMT1-203ENST00000354098 CXCR2P25025 360 aa21.15■□□□□ 0.98
SHMT1-203ENST00000354098 TCTE1Q5JU00 501 aa21.15■□□□□ 0.98
SHMT1-203ENST00000354098 CSNK1A1LQ8N752 337 aa21.15■□□□□ 0.98
SHMT1-203ENST00000354098 TM4SF19Q96DZ7 209 aa21.15■□□□□ 0.98
SHMT1-203ENST00000354098 THAP11Q96EK4 314 aa21.15■□□□□ 0.98
SHMT1-203ENST00000354098 SPRY4Q9C004 299 aa21.15■□□□□ 0.98
SHMT1-203ENST00000354098 B3GNT4Q9C0J1 378 aa21.15■□□□□ 0.98
SHMT1-203ENST00000354098 ACBD3Q9H3P7 528 aa21.15■□□□□ 0.98
SHMT1-203ENST00000354098 THSD1Q9NS62 852 aa21.15■□□□□ 0.98
SHMT1-203ENST00000354098 ZNF225Q9UK10 706 aa21.15■□□□□ 0.98
SHMT1-203ENST00000354098 SPTBP11277 2137 aa21.15■□□□□ 0.98
SHMT1-203ENST00000354098 TEX51A0A1B0GUA7 166 aa21.15■□□□□ 0.98
SHMT1-203ENST00000354098 HPDP32754 393 aaPredicted RBP21.15■□□□□ 0.98
SHMT1-203ENST00000354098 ERVPABLB-1P60509 514 aa21.15■□□□□ 0.98
SHMT1-203ENST00000354098 SNRPNP63162 240 aaKnown RBP21.15■□□□□ 0.98
SHMT1-203ENST00000354098 CYP4F2P78329 520 aa21.15■□□□□ 0.98
SHMT1-203ENST00000354098 LIPJQ5W064 366 aa21.15■□□□□ 0.98
SHMT1-203ENST00000354098 GRHL2Q6ISB3 625 aa21.15■□□□□ 0.98
SHMT1-203ENST00000354098 TLDC1Q6P9B6 456 aa21.15■□□□□ 0.98
SHMT1-203ENST00000354098 ZCCHC23Q6ZST2 131 aa21.15■□□□□ 0.98
SHMT1-203ENST00000354098 ZFAND4Q86XD8 727 aa21.15■□□□□ 0.98
SHMT1-203ENST00000354098 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP21.15■□□□□ 0.98
SHMT1-203ENST00000354098 KRT78Q8N1N4 520 aa21.15■□□□□ 0.98
SHMT1-203ENST00000354098 TBC1D19Q8N5T2 526 aa21.15■□□□□ 0.98
SHMT1-203ENST00000354098 L3MBTL4Q8NA19 623 aa21.15■□□□□ 0.98
SHMT1-203ENST00000354098 OR4F6Q8NGB9 312 aa21.15■□□□□ 0.98
SHMT1-203ENST00000354098 SLC13A3Q8WWT9 602 aa21.15■□□□□ 0.98
SHMT1-203ENST00000354098 ZFP69BQ9UJL9 534 aa21.15■□□□□ 0.98
SHMT1-203ENST00000354098 RUVBL1Q9Y265 456 aaKnown RBP21.15■□□□□ 0.98
SHMT1-203ENST00000354098 AP1M2Q9Y6Q5 423 aa21.15■□□□□ 0.98
SHMT1-203ENST00000354098 MDC1Q14676 2089 aaKnown RBP21.15■□□□□ 0.98
SHMT1-203ENST00000354098 HMGB1P1B2RPK0 211 aaPredicted RBP21.14■□□□□ 0.97
SHMT1-203ENST00000354098 UBFD1O14562 309 aaKnown RBP21.14■□□□□ 0.97
SHMT1-203ENST00000354098 STK17BO94768 372 aa21.14■□□□□ 0.97
SHMT1-203ENST00000354098 MED26O95402 600 aa21.14■□□□□ 0.97
SHMT1-203ENST00000354098 CLDN9O95484 217 aa21.14■□□□□ 0.97
SHMT1-203ENST00000354098 SERPIND1P05546 499 aa21.14■□□□□ 0.97
SHMT1-203ENST00000354098 WDR4P57081 412 aaKnown RBP21.14■□□□□ 0.97
SHMT1-203ENST00000354098 LAPTM5Q13571 262 aa21.14■□□□□ 0.97
SHMT1-203ENST00000354098 CPSF6Q16630 551 aaKnown RBP eCLIP21.14■□□□□ 0.97
SHMT1-203ENST00000354098 PRTGQ2VWP7 1150 aa21.14■□□□□ 0.97
SHMT1-203ENST00000354098 PAGE2BQ5JRK9 111 aa21.14■□□□□ 0.97
SHMT1-203ENST00000354098 CFAP157Q5JU67 520 aa21.14■□□□□ 0.97
SHMT1-203ENST00000354098 FRMD7Q6ZUT3 714 aa21.14■□□□□ 0.97
SHMT1-203ENST00000354098 MILR1Q7Z6M3 343 aa21.14■□□□□ 0.97
SHMT1-203ENST00000354098 ASPGQ86U10 573 aa21.14■□□□□ 0.97
SHMT1-203ENST00000354098 MGARPQ8TDB4 240 aa21.14■□□□□ 0.97
SHMT1-203ENST00000354098 NT5DC2Q9H857 520 aa21.14■□□□□ 0.97
SHMT1-203ENST00000354098 ACTR5Q9H9F9 607 aaPredicted RBP21.14■□□□□ 0.97
SHMT1-203ENST00000354098 ENAMQ9NRM1 1142 aa21.14■□□□□ 0.97
SHMT1-203ENST00000354098 PCDHB3Q9Y5E6 796 aa21.14■□□□□ 0.97
SHMT1-203ENST00000354098 FREM2Q5SZK8 3169 aa21.14■□□□□ 0.97
SHMT1-203ENST00000354098 FITM1A5D6W6 292 aa21.13■□□□□ 0.97
SHMT1-203ENST00000354098 UGDHO60701 494 aa21.13■□□□□ 0.97
SHMT1-203ENST00000354098 OTCP00480 354 aa21.13■□□□□ 0.97
SHMT1-203ENST00000354098 AHRP35869 848 aa21.13■□□□□ 0.97
SHMT1-203ENST00000354098 GCGRP47871 477 aa21.13■□□□□ 0.97
SHMT1-203ENST00000354098 SLC18A1P54219 525 aa21.13■□□□□ 0.97
SHMT1-203ENST00000354098 GRM7Q14831 915 aa21.13■□□□□ 0.97
SHMT1-203ENST00000354098 HIST2H2ACQ16777 129 aaPredicted RBP21.13■□□□□ 0.97
SHMT1-203ENST00000354098 TBC1D25Q3MII6 688 aa21.13■□□□□ 0.97
SHMT1-203ENST00000354098 HIST2H2AA3Q6FI13 130 aa21.13■□□□□ 0.97
SHMT1-203ENST00000354098 LETMD1Q6P1Q0 360 aa21.13■□□□□ 0.97
SHMT1-203ENST00000354098 TIPARPQ7Z3E1 657 aaKnown RBP21.13■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms